HHsearch alignment for GI: 254780636 and conserved domain: cd06146
>cd06146 mut-7_like_exo The mut-7 subfamily is composed of Caenorhabditis elegans mut-7 and similar proteins found in plants and metazoans. Mut-7 is implicated in posttranscriptional gene silencing. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs, termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.
Probab=100.00 E-value=1.9e-39 Score=248.55 Aligned_cols=159 Identities=23% Similarity=0.264 Sum_probs=131.2
Q ss_pred CCCCCHHH---HCCCCCCEEEECCCC--CCCCCCCEEEEEEEEECCCCEEEECCCCCCCC-----CHHHHHHHHCCCCCE
Q ss_conf 57888578---424898279971777--89854450799998418942899746577857-----067767773236402
Q gi|254780636|r 8 EGDIPAEC---AARYVDAIAVDTETL--GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN-----APNLVGMLVDEKREK 77 (207)
Q Consensus 8 ~~dl~~~~---~l~~~~~iaiDtEt~--~l~~~~~~l~LiQl~~~~~~~~l~~~~~~~~~-----~~~L~~ll~d~~i~K 77 (207)
T Consensus 7 ~~~l~~~~~~~~l~~~~vvg~D~Ew~~~~~~~~~~~vaLiQlat~~~-~~liD~~~~~~~~~~~~~~~L~~ll~~~~i~K 85 (191)
T cd06146 7 EEELEALLLALSLEAGRVVGIDSEWKPSFLGDSDPRVAILQLATEDE-VFLLDLLALENLESEDWDRLLKRLFEDPDVLK 85 (191)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCC-CEEEEEECCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 99999999998426898899978757877788889527999952997-58999704565434778999999947999689
Q ss_pred EECCCCHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHCCCCCCCCEECCCC
Q ss_conf 301000016888654200------000004578988652110----------0000088777654200246752003656
Q gi|254780636|r 78 IFHYGRFDIAVLFYTFGV------RVRPVFCTKIASRLTRTY----------TNQHGLKDNLKELLGINISKAQQSSDWS 141 (207)
Q Consensus 78 V~Hn~~~D~~~L~~~~gi------~~~~i~DT~ias~l~~~~----------~~~~~L~~L~~~~lg~~ldK~~q~SdW~ 141 (207)
T Consensus 86 vg~~~~~D~~~L~~~~~~~~~~~~~~~~~~Dl~~~a~~~~~~~~~~~~~~~~~~~~gL~~L~~~~lg~~l~K~~q~SnW~ 165 (191)
T cd06146 86 LGFGFKQDLKALSASYPALKCMFERVQNVLDLQNLAKELQKSDMGRLKGNLPSKTKGLADLVQAVLGKPLDKSEQCSNWE 165 (191)
T ss_pred EEECHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99443868999998658643233364403579999999731122101100355675699999999098788565138999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 54432368999986459999999999
Q gi|254780636|r 142 ADDLSDEQLQYAASDVVHLHALRLQF 167 (207)
Q Consensus 142 ~rpLs~~Qi~YAA~Dv~~l~~L~~~l 167 (207)
T Consensus 166 ~rPLt~~Qi~YAA~Da~~ll~iy~~L 191 (191)
T cd06146 166 RRPLREEQILYAALDAYCLLEVFDKL 191 (191)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99899999999999899999999739