HHsearch alignment for GI: 254780636 and conserved domain: cd06148
>cd06148 Egl_like_exo The Egalitarian (Egl) protein subfamily is composed of Drosophila Egl and similar proteins. Egl is a component of an mRNA-binding complex which is required for oocyte specification. Egl contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. The motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The conservation of this subfamily throughout eukaryotes suggests that its members may be part of ancient RNA processing complexes that are likely to participate in the regulated processing of specific mRNAs.
Probab=100.00 E-value=3.1e-43 Score=270.53 Aligned_cols=169 Identities=24% Similarity=0.319 Sum_probs=147.3
Q ss_pred HHHCCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCC--CHHHHHHHHCCCCCEEECCCCHHHHHHHH
Q ss_conf 7842489827997177789854450799998418942899746577857--06776777323640230100001688865
Q gi|254780636|r 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN--APNLVGMLVDEKREKIFHYGRFDIAVLFY 91 (207)
Q Consensus 14 ~~~l~~~~~iaiDtEt~~l~~~~~~l~LiQl~~~~~~~~l~~~~~~~~~--~~~L~~ll~d~~i~KV~Hn~~~D~~~L~~ 91 (207)
T Consensus 4 i~~L~~~~vi~iD~E~~~~~~~-g~l~LiQiat~~~~vyl~D~~~~~~~~~~~~Lk~iLe~~~I~KV~H~~r~D~~~L~~ 82 (197)
T cd06148 4 IIHLKKQKVIGLDCEGVNLGRK-GKLCLVQIATRTGQIYLFDILKLGSIVFINGLKDILESKKILKVIHDCRRDSDALYH 82 (197)
T ss_pred HHHHHHCCEEEEECCCCCCCCC-CCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHH
T ss_conf 9998759999998886788989-988799996489988999616676344568999995699823999610999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHCCCCCCC--------CEECCCCCCCCCHHHHHHHHHH
Q ss_conf 42000000045789886521100-------00008877765420024675--------2003656544323689999864
Q gi|254780636|r 92 TFGVRVRPVFCTKIASRLTRTYT-------NQHGLKDNLKELLGINISKA--------QQSSDWSADDLSDEQLQYAASD 156 (207)
Q Consensus 92 ~~gi~~~~i~DT~ias~l~~~~~-------~~~~L~~L~~~~lg~~ldK~--------~q~SdW~~rpLs~~Qi~YAA~D 156 (207)
T Consensus 83 ~~gi~~~nvfDTqiA~~ll~~~~~~~~~~~~~~sl~~l~~~~l~~~~~~~~~~~~~~~~~~s~W~~RPLt~~ql~YAa~D 162 (197)
T cd06148 83 QYGIKLNNVFDTQVADALLQEQETGGFNPDRVISLVQLLDKYLYISISLKEDVKKLMREDPKFWALRPLTEDMIRYAALD 162 (197)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 70997067031999999975313147677564159999999957640177877888750655446799999999999998
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 599999999999999974918999999
Q gi|254780636|r 157 VVHLHALRLQFTEKLQRLGRSDLATSC 183 (207)
Q Consensus 157 v~~l~~L~~~l~~~L~~~~~~~~~~~e 183 (207)
T Consensus 163 V~yL~~L~~~L~~~Li~~~~~~~~~~~ 189 (197)
T cd06148 163 VLCLLPLYYAMLDALISKFLKAVFKYL 189 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999998