HHsearch alignment for GI: 254780636 and conserved domain: pfam04857

>pfam04857 CAF1 CAF1 family ribonuclease. The major pathways of mRNA turnover in eukaryotes initiate with shortening of the polyA tail. CAF1 encodes a critical component of the major cytoplasmic deadenylase in yeast. Both Caf1p is required for normal mRNA deadenylation in vivo and localizes to the cytoplasm. Caf1p copurifies with a Ccr4p-dependent polyA-specific exonuclease activity. Some members of this family include and inserted RNA binding domain pfam01424. This family of proteins is related to other exonucleases pfam00929 (Bateman A pers. obs.). The crystal structure of Saccharomyces cerevisiae Pop2 has been resolved at 2.3 Angstrom#resolution.
Probab=97.48  E-value=0.0006  Score=42.19  Aligned_cols=113  Identities=25%  Similarity=0.340  Sum_probs=65.0

Q ss_pred             HCCCCCCEEEECCCCCCCCCC-------------------CEEEEEEEE----ECCCC------EEEECC-----CCCCC
Q ss_conf             424898279971777898544-------------------507999984----18942------899746-----57785
Q gi|254780636|r   16 AARYVDAIAVDTETLGLMPRR-------------------DRLCIVQLS----PGDGT------VDIIRI-----AAGQK   61 (207)
Q Consensus        16 ~l~~~~~iaiDtEt~~l~~~~-------------------~~l~LiQl~----~~~~~------~~l~~~-----~~~~~   61 (207)
T Consensus        18 ~i~~~~fVaiDtEFpG~v~~p~~~~~~t~~~~Y~~lk~nVd~l~iiQlGlt~~~~~g~~p~~~~~wqfNf~~F~~~~d~~   97 (235)
T pfam04857        18 AIDSYDFIAIDTEFPGVVARPIGSFRSTSDYRYQALRKNVDRLKIIQLGLTLFDEKGNLPDSYYTWQFNFSLFNLEEDFY   97 (235)
T ss_pred             HHHCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCC
T ss_conf             98319989995142752468988888987899999984300123146898887468878987437850155679732211


Q ss_pred             CCH-----------------------HH------HHHHHC-CCCCEEECCCCHHHHHHHHHH-H-CC-------------
Q ss_conf             706-----------------------77------677732-364023010000168886542-0-00-------------
Q gi|254780636|r   62 NAP-----------------------NL------VGMLVD-EKREKIFHYGRFDIAVLFYTF-G-VR-------------   96 (207)
Q Consensus        62 ~~~-----------------------~L------~~ll~d-~~i~KV~Hn~~~D~~~L~~~~-g-i~-------------   96 (207)
T Consensus        98 ~~~Si~fL~~~G~DF~~~~~~GI~~~~f~e~l~~S~lv~~~~~~~wv~f~g~yD~~yl~k~l~g~~LP~~~~eF~~~l~~  177 (235)
T pfam04857        98 APSSIEFLAKQGFDFNKHRREGIPYLRFAELLGSSGLFLNISSVTWVTFHGLYDFGYLLKLLTGGPLPETLDDFLELLRE  177 (235)
T ss_pred             CHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHEECCCCCEEEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             68899999985988899987099989999899870302057998799817277899999997499899989999999999


Q ss_pred             -CCCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHCC
Q ss_conf             -00004578988652110--0000088777654200
Q gi|254780636|r   97 -VRPVFCTKIASRLTRTY--TNQHGLKDNLKELLGI  129 (207)
Q Consensus        97 -~~~i~DT~ias~l~~~~--~~~~~L~~L~~~~lg~  129 (207)
T Consensus       178 ~FP~vyD~K~la~~~~~~~~~~~~gL~~lA~~-L~v  212 (235)
T pfam04857       178 LFPRVYDTKYLAKFCFELDGGSNGGLQELADL-LGV  212 (235)
T ss_pred             HCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHH-CCC
T ss_conf             77717509999985221358755789999997-499