HHsearch alignment for GI: 254780636 and conserved domain: smart00486
>smart00486 POLBc DNA polymerase type-B family. DNA polymerase alpha, delta, epsilon and zeta chain (eukaryota), DNA polymerases in archaea, DNA polymerase II in e. coli, mitochondrial DNA polymerases and and virus DNA polymerases
Probab=94.25 E-value=0.38 Score=25.90 Aligned_cols=95 Identities=18% Similarity=0.073 Sum_probs=52.8
Q ss_pred HCCCCCEEECCC-CHHHHHHHHHHHCCCC--------------------------------------CHHHHHHHHHHHH
Q ss_conf 323640230100-0016888654200000--------------------------------------0045789886521
Q gi|254780636|r 71 VDEKREKIFHYG-RFDIAVLFYTFGVRVR--------------------------------------PVFCTKIASRLTR 111 (207)
Q Consensus 71 ~d~~i~KV~Hn~-~~D~~~L~~~~gi~~~--------------------------------------~i~DT~ias~l~~ 111 (207)
T Consensus 83 ~dpdii-~g~N~~~FD~~yi~~R~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~D~~~~~~~~~ 161 (471)
T smart00486 83 YDPDII-YGHNISNFDLPYIISRLEKLKIKPLSFIGRLKNIIDIKRKKPLFGSKSFGKTIKVKIKGRLVIDLYNLYKNKL 161 (471)
T ss_pred CCCCEE-EECCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEECCCCCCCCCCCEEEEEEEEEEEEEHHHHHHHHH
T ss_conf 199999-9658878768999999998489647763735778764320332101256631489985599978899998860
Q ss_pred HHCCCHHHHHHHHHHHCCCCC---CCCEECCCCCC-CCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 100000088777654200246---75200365654-432368999986459999999999
Q gi|254780636|r 112 TYTNQHGLKDNLKELLGINIS---KAQQSSDWSAD-DLSDEQLQYAASDVVHLHALRLQF 167 (207)
Q Consensus 112 ~~~~~~~L~~L~~~~lg~~ld---K~~q~SdW~~r-pLs~~Qi~YAA~Dv~~l~~L~~~l 167 (207)
T Consensus 162 -~l~sy~L~~v~~~~l~~~k~d~~~~~i~~~~~~~~~~~~~~~~Y~~~D~~l~~~l~~~~ 220 (471)
T smart00486 162 -KLPSYKLDTVAEYLLGKEKDDLPYKDIPELYNLNYKLRDELLEYCIQDAVLTLKLFNKL 220 (471)
T ss_pred -CCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -44668889999999577888899899999985393679999999999999999999986