HHsearch results for GI: 254780636 and protein with PDBid: 1bgx_T
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=99.73 E-value=6.3e-18 Score=122.19 Aligned_cols=146 Identities=14% Similarity=0.013 Sum_probs=114.5
Q ss_pred EEECCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCCHHHH
Q ss_conf 99717778985445079999841894289974657785706776777323640230100001688865420000000457
Q gi|254780636|r 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103 (207)
Q Consensus 24 aiDtEt~~l~~~~~~l~LiQl~~~~~~~~l~~~~~~~~~~~~L~~ll~d~~i~KV~Hn~~~D~~~L~~~~gi~~~~i~DT 103 (207)
.+++++.+.++....+..+.++.+ +.++.++.. ++. + .++.|+.|+.++|+.+|..+.|+...++|||
T Consensus 306 ~~~~~~~~~~~~~a~~vg~~~~~~-~~~~~~p~~--------~~~-l--~~l~k~~~~lk~d~~vl~~~~gi~~~~~~Dt 373 (832)
T 1bgx_T 306 FVGFVLSRKEPMWADLLALAAARG-GRVHRAPEP--------YKA-L--RDLKEARGLLAKDLSVLALREGLGLPPGDDP 373 (832)
T ss_dssp CBEEECSSSCTTTCCCCEEECBSS-SEEECCSCH--------HHH-H--HHCSSBCBTTHHHHHHHHHHHTCCCCBCCCH
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC-CEEEECCHH--------HHH-H--HHHHHHHCCCCCCHHHHHHHHHHCCCHHHHH
T ss_conf 578885267641215776654048-848975404--------666-6--7688862443003999864101124400259
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHH
Q ss_conf 89886521100000088777654200246752003656544323689999864599999999999999974-91899999
Q gi|254780636|r 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL-GRSDLATS 182 (207)
Q Consensus 104 ~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~~~-~~~~~~~~ 182 (207)
|+|++++++ .++++..+++++++.. ..||+.||.++++||..|.++|.++ ++..+|..
T Consensus 374 miaayLl~p--~~~~~~~l~~~~~~e~-------------------~eYa~~Da~~t~~L~~~L~~~L~~e~~l~~l~~~ 432 (832)
T 1bgx_T 374 MLLAYLLDP--SNTTPEGVARRYGGEW-------------------TEEAGERAALSERLFANLWGRLEGEERLLWLYRE 432 (832)
T ss_dssp HHHHHHHCT--TCCSTTHHHHHHSCCC-------------------CSSHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHCC--CCCCHHHHHHHHCCCC-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998647--7868067777625441-------------------5779999999999999999998877889999999
Q ss_pred -HHHHHHHHHHHHHCCCCCCCC
Q ss_conf -996400689998667988884
Q gi|254780636|r 183 -CCNFLMDRAELDLLGWENVDI 203 (207)
Q Consensus 183 -e~~~l~~~~~me~~g~~~~~~ 203 (207)
|+++++++++||.+|++ +|.
T Consensus 433 IE~pl~~vLa~ME~~Gi~-vD~ 453 (832)
T 1bgx_T 433 VERPLSAVLAHMEATGVR-LDV 453 (832)
T ss_dssp THHHHHHHHHHHHHHCBC-BCT
T ss_pred HHHHHHHHHHHHHHCCCC-CCH
T ss_conf 987887888999871554-329