HHsearch results for GI: 254780636 and protein with PDBid: 1uoc_A
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=97.50 E-value=0.0014 Score=38.81 Aligned_cols=140 Identities=14% Similarity=0.197 Sum_probs=80.8
Q ss_pred HCCCCCCEEEECCCCCCCCCC-------------------CEEEEEEEE----ECC-------CCEEEECCC--CCC--C
Q ss_conf 424898279971777898544-------------------507999984----189-------428997465--778--5
Q gi|254780636|r 16 AARYVDAIAVDTETLGLMPRR-------------------DRLCIVQLS----PGD-------GTVDIIRIA--AGQ--K 61 (207)
Q Consensus 16 ~l~~~~~iaiDtEt~~l~~~~-------------------~~l~LiQl~----~~~-------~~~~l~~~~--~~~--~ 61 (207)
.+...+.||+|||++|+.... +.+.+||++ ..+ ..++.+.+. ... .
T Consensus 34 ~i~~~~fVAiD~Ef~Gi~~~~~~~~~~t~~~rY~~lk~nv~~~~iiQlGlt~f~~~g~~~~~~~~~w~FNf~~~~~~~~~ 113 (289)
T 1uoc_A 34 LVSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPSTWQFNFEFDPKKEIM 113 (289)
T ss_dssp HTTTSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCCCSSSCSEEEEEBCCCTTCCCC
T ss_pred HHHCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCC
T ss_conf 98339989996251784578886668999999999998664363246999987048876888714789977448620232
Q ss_pred CCH-----------------------HHHH------HHHCCCCCEEECCCCHHHHHHHHHH-HC-CC-------------
Q ss_conf 706-----------------------7767------7732364023010000168886542-00-00-------------
Q gi|254780636|r 62 NAP-----------------------NLVG------MLVDEKREKIFHYGRFDIAVLFYTF-GV-RV------------- 97 (207)
Q Consensus 62 ~~~-----------------------~L~~------ll~d~~i~KV~Hn~~~D~~~L~~~~-gi-~~------------- 97 (207)
.+. ...+ ++.++++.||+||+-+|+..|.+.+ |- .|
T Consensus 114 ~~~Si~fL~~~G~DFnk~~~~GI~~~~f~~~~~~s~l~~~~~~~wv~f~g~yD~~yl~k~l~~~~LP~~~~~F~~~~~~~ 193 (289)
T 1uoc_A 114 STESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQY 193 (289)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESSTTHHHHHHHHHHTTSCCCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHCCHHHCCCCEEEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 57789999985998689997199888888998750044247862896043557999999971898999999999999998
Q ss_pred -CCHHHHHHHHHHHHHHCC-------------CHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf -000457898865211000-------------000887776542002467520036565443236899998645999999
Q gi|254780636|r 98 -RPVFCTKIASRLTRTYTN-------------QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 (207)
Q Consensus 98 -~~i~DT~ias~l~~~~~~-------------~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L 163 (207)
..++||...++.+.+... +.||..+++. +|++ +. ..-+=|+.|+..+-.+
T Consensus 194 Fp~iyDtK~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~va~~-l~v~-------------r~--g~~HeAG~DS~lTg~~ 257 (289)
T 1uoc_A 194 MPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADE-LGLP-------------RF--SIFTTTGGQSLLMLLS 257 (289)
T ss_dssp CSSEEEHHHHHHHHTTTCC-------------CCSHHHHHHH-TTCC-------------CC--GGGGSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH-CCCC-------------CC--CCCCCCHHHHHHHHHH
T ss_conf 762613999998621335754343322101234888899987-2998-------------77--8886607899999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780636|r 164 RLQFTEKL 171 (207)
Q Consensus 164 ~~~l~~~L 171 (207)
+-++.+.+
T Consensus 258 F~~l~~~~ 265 (289)
T 1uoc_A 258 FCQLSKLS 265 (289)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
T ss_conf 99999987