HHsearch results for GI: 254780636 and protein with PDBid: 2gui_A
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A*
Probab=97.89 E-value=3.5e-05 Score=48.14 Aligned_cols=133 Identities=20% Similarity=0.208 Sum_probs=75.1
Q ss_pred CCCCCEEEECCCCCCCCCCCE---EEEEEEEEC---C-----CCE-EEECCCCCC-CC---------------------C
Q ss_conf 489827997177789854450---799998418---9-----428-997465778-57---------------------0
Q gi|254780636|r 18 RYVDAIAVDTETLGLMPRRDR---LCIVQLSPG---D-----GTV-DIIRIAAGQ-KN---------------------A 63 (207)
Q Consensus 18 ~~~~~iaiDtEt~~l~~~~~~---l~LiQl~~~---~-----~~~-~l~~~~~~~-~~---------------------~ 63 (207)
+....|.|||||||+++.... =.+||++.- + ..+ .++...... .. .
T Consensus 7 ~~~r~vv~D~ETTGl~~~~~~~~~drIieigav~~~~~~~~~~~~~~~v~P~~~~~~~~~~i~gi~~e~~~~~~~~~~v~ 86 (194)
T 2gui_A 7 AITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAEVA 86 (194)
T ss_dssp -CCEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEECSCCEEEECCCSSCCCHHHHHHHCCCHHHHTTSCCHHHHH
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEECCEEECEEEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 88837999973799987645678954999999999999997407899989998655778987075576643345589988
Q ss_pred HHHHHHHHCCCCCEEECCCCHHHHHHHHHHH---CC--CC----CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 6776777323640230100001688865420---00--00----004578988652110000008877765420024675
Q gi|254780636|r 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFG---VR--VR----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 (207)
Q Consensus 64 ~~L~~ll~d~~i~KV~Hn~~~D~~~L~~~~g---i~--~~----~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~ 134 (207)
..+.+++.+. ..|+||..+|..++...+. .. .. .+.||...++-... ..+++|..+++. +|+..++
T Consensus 87 ~~~~~~l~~~--~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~p-~~~~~L~~l~~~-~~i~~~~- 161 (194)
T 2gui_A 87 DEFMDYIRGA--ELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFP-GKRNSLDALCAR-YEIDNSK- 161 (194)
T ss_dssp HHHHHHHTTS--EEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHST-TSCCSHHHHHHH-TTCCCTT-
T ss_pred HHHHHHHCCC--EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHCC-CCCCCHHHHHHH-CCCCCCC-
T ss_conf 9999870897--3899785131999999999809997655544200019999999748-987889999998-5999899-
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2003656544323689999864599999999999
Q gi|254780636|r 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 (207)
Q Consensus 135 ~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~ 168 (207)
.+.+=|..||..+.+||.+|.
T Consensus 162 -------------~~~H~Al~Da~~t~~l~~~m~ 182 (194)
T 2gui_A 162 -------------RTLHGALLDAQILAEVYLAMT 182 (194)
T ss_dssp -------------CSSCCHHHHHHHHHHHHHHHT
T ss_pred -------------CCCCCHHHHHHHHHHHHHHHH
T ss_conf -------------987488999999999999997