HHsearch results for GI: 254780636 and protein with PDBid: 2ioc_B

>2ioc_B Three prime repair exonuclease 1; proline helix, nucleotide complex, DNAQ family, hydrolase; HET: D5M; 2.10A {Mus musculus} SCOP: c.55.3.5 PDB: 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=98.73  E-value=4.4e-08  Score=64.96  Aligned_cols=134  Identities=18%  Similarity=0.101  Sum_probs=79.4

Q ss_pred             CCCEEEECCCCCCCCCCCEEEEEEEEEC----C-----------------------CCEEEECCCCC-------------
Q ss_conf             9827997177789854450799998418----9-----------------------42899746577-------------
Q gi|254780636|r   20 VDAIAVDTETLGLMPRRDRLCIVQLSPG----D-----------------------GTVDIIRIAAG-------------   59 (207)
Q Consensus        20 ~~~iaiDtEt~~l~~~~~~l~LiQl~~~----~-----------------------~~~~l~~~~~~-------------   59 (207)
                      ...|.+||||||+++.++++  ||++.-    +                       .-..++.....             
T Consensus        12 ~t~v~~D~ETTGl~~~~~~I--ieia~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~lv~P~~~I~~~a~~ihGIt~   89 (242)
T 2ioc_B           12 QTLIFLDLEATGLPSSRPEV--TELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSK   89 (242)
T ss_dssp             SEEEEEEEEESSCGGGCCCE--EEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSSCEEEEEECCCSSCCCHHHHHHHCCCH
T ss_pred             CEEEEEEEECCCCCCCCCCE--EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHEECCCCCCCHHHHHHCCCCH
T ss_conf             85999998889969999876--8999999876753465222111113566541101233012889979988998629999


Q ss_pred             ------C--C----CCHHHHHHHHC--CCCCEEECCC-CHHHHHHHHHH---HCCC--CC--HHHHHHHHHHHHH-----
Q ss_conf             ------8--5----70677677732--3640230100-00168886542---0000--00--0457898865211-----
Q gi|254780636|r   60 ------Q--K----NAPNLVGMLVD--EKREKIFHYG-RFDIAVLFYTF---GVRV--RP--VFCTKIASRLTRT-----  112 (207)
Q Consensus        60 ------~--~----~~~~L~~ll~d--~~i~KV~Hn~-~~D~~~L~~~~---gi~~--~~--i~DT~ias~l~~~-----  112 (207)
                            .  .    ..+.++.+++.  ....-|+||+ .||..+|.+.+   |+..  .+  ..||+-+++-+..     
T Consensus        90 ~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~lVahN~~~FD~~~L~~~~~r~~~~~~~~~~~~iDtl~~~~~~~~~~~~~  169 (242)
T 2ioc_B           90 AELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPS  169 (242)
T ss_dssp             HHHHHTTCCCSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHTC---
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHCCCCC
T ss_conf             99972015505689999899999741688559983547889999999999859988877886877899999970324222


Q ss_pred             ---HCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---00000088777654200246752003656544323689999864599999999999999
Q gi|254780636|r  113 ---YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL  171 (207)
Q Consensus       113 ---~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L  171 (207)
                         ...+++|.+|+++++|.....                -+=|..||..+.+++.++.+.+
T Consensus       170 ~~~~~~~~~L~~l~~~~~g~~~~~----------------aH~Al~Da~~t~~l~~~~~~~~  215 (242)
T 2ioc_B          170 GNGSRKSYSLGSIYTRLYWQAPTD----------------SHTAEGDVLTLLSICQWKPQAL  215 (242)
T ss_dssp             ----CCCCCHHHHHHHHHSSCCSS----------------TTSHHHHHHHHHHHHTSSHHHH
T ss_pred             CCCCCCCCCHHHHHHHHCCCCCCC----------------CCCHHHHHHHHHHHHHHHHHHH
T ss_conf             467766856899999974999987----------------8388999999999999999999