HHsearch results for GI: 254780636 and protein with PDBid: 2ioc_B
>2ioc_B Three prime repair exonuclease 1; proline helix, nucleotide complex, DNAQ family, hydrolase; HET: D5M; 2.10A {Mus musculus} SCOP: c.55.3.5 PDB: 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=98.73 E-value=4.4e-08 Score=64.96 Aligned_cols=134 Identities=18% Similarity=0.101 Sum_probs=79.4
Q ss_pred CCCEEEECCCCCCCCCCCEEEEEEEEEC----C-----------------------CCEEEECCCCC-------------
Q ss_conf 9827997177789854450799998418----9-----------------------42899746577-------------
Q gi|254780636|r 20 VDAIAVDTETLGLMPRRDRLCIVQLSPG----D-----------------------GTVDIIRIAAG------------- 59 (207)
Q Consensus 20 ~~~iaiDtEt~~l~~~~~~l~LiQl~~~----~-----------------------~~~~l~~~~~~------------- 59 (207)
...|.+||||||+++.++++ ||++.- + .-..++.....
T Consensus 12 ~t~v~~D~ETTGl~~~~~~I--ieia~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~lv~P~~~I~~~a~~ihGIt~ 89 (242)
T 2ioc_B 12 QTLIFLDLEATGLPSSRPEV--TELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSK 89 (242)
T ss_dssp SEEEEEEEEESSCGGGCCCE--EEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSSCEEEEEECCCSSCCCHHHHHHHCCCH
T ss_pred CEEEEEEEECCCCCCCCCCE--EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHEECCCCCCCHHHHHHCCCCH
T ss_conf 85999998889969999876--8999999876753465222111113566541101233012889979988998629999
Q ss_pred ------C--C----CCHHHHHHHHC--CCCCEEECCC-CHHHHHHHHHH---HCCC--CC--HHHHHHHHHHHHH-----
Q ss_conf ------8--5----70677677732--3640230100-00168886542---0000--00--0457898865211-----
Q gi|254780636|r 60 ------Q--K----NAPNLVGMLVD--EKREKIFHYG-RFDIAVLFYTF---GVRV--RP--VFCTKIASRLTRT----- 112 (207)
Q Consensus 60 ------~--~----~~~~L~~ll~d--~~i~KV~Hn~-~~D~~~L~~~~---gi~~--~~--i~DT~ias~l~~~----- 112 (207)
. . ..+.++.+++. ....-|+||+ .||..+|.+.+ |+.. .+ ..||+-+++-+..
T Consensus 90 ~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~lVahN~~~FD~~~L~~~~~r~~~~~~~~~~~~iDtl~~~~~~~~~~~~~ 169 (242)
T 2ioc_B 90 AELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPS 169 (242)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHTC---
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHCCCCC
T ss_conf 99972015505689999899999741688559983547889999999999859988877886877899999970324222
Q ss_pred ---HCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---00000088777654200246752003656544323689999864599999999999999
Q gi|254780636|r 113 ---YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 (207)
Q Consensus 113 ---~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L 171 (207)
...+++|.+|+++++|..... -+=|..||..+.+++.++.+.+
T Consensus 170 ~~~~~~~~~L~~l~~~~~g~~~~~----------------aH~Al~Da~~t~~l~~~~~~~~ 215 (242)
T 2ioc_B 170 GNGSRKSYSLGSIYTRLYWQAPTD----------------SHTAEGDVLTLLSICQWKPQAL 215 (242)
T ss_dssp ----CCCCCHHHHHHHHHSSCCSS----------------TTSHHHHHHHHHHHHTSSHHHH
T ss_pred CCCCCCCCCHHHHHHHHCCCCCCC----------------CCCHHHHHHHHHHHHHHHHHHH
T ss_conf 467766856899999974999987----------------8388999999999999999999