HHsearch results for GI: 254780636 and protein with PDBid: 2py5_A
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=97.34 E-value=0.0035 Score=36.51 Aligned_cols=142 Identities=11% Similarity=0.049 Sum_probs=74.6
Q ss_pred CCCEEEECCCCCCCCCCCEEEEEEEEECCCC-EEEECCCCCCCCCHHHHHHHH--CCCCCEEECCCCHHHHHHHHHHHC-
Q ss_conf 9827997177789854450799998418942-899746577857067767773--236402301000016888654200-
Q gi|254780636|r 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGT-VDIIRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVLFYTFGV- 95 (207)
Q Consensus 20 ~~~iaiDtEt~~l~~~~~~l~LiQl~~~~~~-~~l~~~~~~~~~~~~L~~ll~--d~~i~KV~Hn~~~D~~~L~~~~gi- 95 (207)
-+++.+|.||+ .+....++..+-+....+. .+-+. .....+.+.+. ||.| +|||.+||..++..++..
T Consensus 6 ~~~~~~D~Et~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~f~~~i~~~dpdi--~~hNl~FD~~~i~~~~~~~ 77 (575)
T 2py5_A 6 RKMYSCAFETT-TKVEDCRVWAYGYMNIEDHSEYKIG-----NSLDEFMAWVLKVQADL--YFHNLKFAGAFIINWLERN 77 (575)
T ss_dssp CCEEEEEEEEC-CBTTBCCEEEEEEEESSCTTCEEEE-----SCHHHHHHHHHHHCCEE--EETTHHHHHHHHHHHHHHT
T ss_pred CEEEEEEEEEC-CCCCCCEEEEEEEEECCCCEEEEHH-----HHHHHHHHHHHHCCCCE--EEECCCCCHHHHHHHHHHC
T ss_conf 51799999706-8977731479999717984077708-----99999999998659979--9988757999999999970
Q ss_pred --CCCCHHH----------H-HHH---------------HHHHHHHC-CCHHHHHHHHHHHCCCCCCCC---EECCCCCC
Q ss_conf --0000045----------7-898---------------86521100-000088777654200246752---00365654
Q gi|254780636|r 96 --RVRPVFC----------T-KIA---------------SRLTRTYT-NQHGLKDNLKELLGINISKAQ---QSSDWSAD 143 (207)
Q Consensus 96 --~~~~i~D----------T-~ia---------------s~l~~~~~-~~~~L~~L~~~~lg~~ldK~~---q~SdW~~r 143 (207)
....-.+ . .+. -.+.+++. .+.||.++++.+ +....|.. ...+|...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~DS~~l~~~SL~~va~~f-~l~~~K~~~~~~~~~~~~~ 156 (575)
T 2py5_A 78 GFKWSADGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIYDSLKKLPFPVKKIAKDF-KLTVLKGDIDYHKERPVGY 156 (575)
T ss_dssp TCEECTTCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEEEHHHHSCSCHHHHHHHT-TCCCCSSCCCTTSCCCTTC
T ss_pred CCCCEECCCCCCCCCEEEECCEEEEEEEEEEECCEEEEEEEEEECCCCCCCCHHHHHHHH-CCCCCCCCCCHHHCCHHHH
T ss_conf 986203246766652267354579998999603301368999842144844799999873-7454556477444102233
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 432368999986459999999999999
Q gi|254780636|r 144 DLSDEQLQYAASDVVHLHALRLQFTEK 170 (207)
Q Consensus 144 pLs~~Qi~YAA~Dv~~l~~L~~~l~~~ 170 (207)
.+.++.+.|+..||..|.+++..+.+.
T Consensus 157 ~~~~~~~~Y~~~Dv~ll~~i~~~~~~~ 183 (575)
T 2py5_A 157 KITPEEYAYIKNDIQIIAEALLIQFKQ 183 (575)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 232989999999999999999999998