HHsearch results for GI: 254780636 and protein with PDBid: 2qxf_A
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, product bound structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli K12} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=98.39 E-value=3.6e-06 Score=53.86 Aligned_cols=134 Identities=19% Similarity=0.070 Sum_probs=75.6
Q ss_pred CCCCCEEEECCCCCCCCCCCEEEEEEEEE----CCC----C--EEEECCCCCCCCC------------------------
Q ss_conf 48982799717778985445079999841----894----2--8997465778570------------------------
Q gi|254780636|r 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSP----GDG----T--VDIIRIAAGQKNA------------------------ 63 (207)
Q Consensus 18 ~~~~~iaiDtEt~~l~~~~~~l~LiQl~~----~~~----~--~~l~~~~~~~~~~------------------------ 63 (207)
.....|.+|+||||++|.++++ ||+|. .+. . .+...+.......
T Consensus 7 ~~~~~v~~D~ETTGl~~~~d~i--iq~~ai~~d~~~~~~~~~~~~~~~~~~~~~p~~~a~~v~gi~~~~~~~~~~~~~e~ 84 (482)
T 2qxf_A 7 QQSTFLFHDYETFGTHPALDRP--AQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAF 84 (482)
T ss_dssp CCCEEEEEEEEESSSCTTTSCE--EEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHH
T ss_pred CCCCEEEEEEECCCCCCCCCCE--EEEEEEEECCCCCEEEEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHCCCCCHHHH
T ss_conf 6897899998878979999822--89999999899858514567763479999988789688494999997399999999
Q ss_pred -HHHHHHHHCCCCCEEECC-CCHHHHHHHHHHH---CCC--------CCHHHHHHHHHHHHH-------------HCCCH
Q ss_conf -677677732364023010-0001688865420---000--------000457898865211-------------00000
Q gi|254780636|r 64 -PNLVGMLVDEKREKIFHY-GRFDIAVLFYTFG---VRV--------RPVFCTKIASRLTRT-------------YTNQH 117 (207)
Q Consensus 64 -~~L~~ll~d~~i~KV~Hn-~~~D~~~L~~~~g---i~~--------~~i~DT~ias~l~~~-------------~~~~~ 117 (207)
..+.++++.+...-|||| +.||..+|...+- ..| ....||......+.. ...++
T Consensus 85 ~~~i~~~~~~~~~~~vg~N~~~FD~~~l~~~~~r~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (482)
T 2qxf_A 85 AARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSF 164 (482)
T ss_dssp HHHHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCC
T ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 99999998448976999676334799999998874478501220268750256888888864044221243234686646
Q ss_pred HHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 08877765420024675200365654432368999986459999999999999
Q gi|254780636|r 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 (207)
Q Consensus 118 ~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~ 170 (207)
.|..++.. .|+. ...-+=|..||.+|.+|...+.+.
T Consensus 165 kL~~l~~~-~~i~----------------~~~aHdA~~D~~~t~~l~~~l~~~ 200 (482)
T 2qxf_A 165 RLEHLTKA-NGIE----------------HSNAHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp CHHHHHHH-TTCC----------------CC---CTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHH-CCCC----------------CCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 69999998-1998----------------778866355179999999999874