HHsearch results for GI: 254780636 and protein with PDBid: 3cym_A
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function, ribonuclease D, exonuclease; 2.10A {Bifidobacterium adolescentis ATCC15703}
Probab=100.00 E-value=0 Score=288.94 Aligned_cols=175 Identities=21% Similarity=0.307 Sum_probs=149.8
Q ss_pred CCCHHHH-C-CCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEECCCC---CCCCCHHHHHHHHCCCCCEEECCCCH
Q ss_conf 8885784-2-48982799717778985445079999841894289974657---78570677677732364023010000
Q gi|254780636|r 10 DIPAECA-A-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA---GQKNAPNLVGMLVDEKREKIFHYGRF 84 (207)
Q Consensus 10 dl~~~~~-l-~~~~~iaiDtEt~~l~~~~~~l~LiQl~~~~~~~~l~~~~~---~~~~~~~L~~ll~d~~i~KV~Hn~~~ 84 (207)
+|.+.+. + +..++|||||||+++++|++++|||||++.++.+|+|++.. .......|++++. +|+|||||+++
T Consensus 26 ~l~~~~~~L~~~~~~iavDtE~~~~~~y~~~~~LvQi~~~g~~~~liDp~~~~~~~~~~~~L~~~l~--~i~kv~H~~~~ 103 (440)
T 3cym_A 26 AFRDYCSELASSHGSLAADAERASGFRYGHEDWLVQFKRDGAGIGLLDPQALAAAGADWNDFNRAVG--DAVWILHDSLQ 103 (440)
T ss_dssp HHHHHHHHHHSCEEEEEEEEEECTTTSSSCCEEEEEEEEETTEEEEECHHHHHHTTCCHHHHHHHHT--TCEEEESSHHH
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHC--CCEEEEECCHH
T ss_conf 9999999997179918997986788806874789998678988799805555655531799999867--98199977478
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 16888654200000004578988652110000008877765420024675200365654432368999986459999999
Q gi|254780636|r 85 DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164 (207)
Q Consensus 85 D~~~L~~~~gi~~~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~ 164 (207)
|+.+|.+ +|+.|.|+||||+|+++++ . .++||+.|++++||++++|+.|+|||++||||++|+.|||.||.||++||
T Consensus 104 Dl~~l~~-~g~~~~~~fDTqiAa~~lg-~-~~~gl~~l~~~~lg~~l~K~~~~sdW~~rPLs~~q~~YAa~Dv~~L~~l~ 180 (440)
T 3cym_A 104 DLPGFDE-LGMEPQRLFDTEIAARLLG-L-KRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELE 180 (440)
T ss_dssp HHHHHHH-HTCCCCEEEEHHHHHHHTT-C-SSCSHHHHHHHHHCEECCCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHH-CCCCCCCCHHHHHHHHHCC-C-CCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999998-7881288122999998728-8-87779999999947665638888761787788899999986067789999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999974918999999964006
Q gi|254780636|r 165 LQFTEKLQRLGRSDLATSCCNFLMD 189 (207)
Q Consensus 165 ~~l~~~L~~~~~~~~~~~e~~~l~~ 189 (207)
+.|.++|.+.++.+|+++||..+-.
T Consensus 181 ~~l~~~L~~~~~~~~~~ee~~~~~~ 205 (440)
T 3cym_A 181 TKMRAELKRQGKMEWAQEEFDYALK 205 (440)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 9999999871217889999999985