HHsearch results for GI: 254780636 and protein with PDBid: 3d45_A
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, cytoplasm, exonuclease, hydrolase, magnesium, metal-binding, nonsense- mediated mRNA decay; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.39 E-value=0.023 Score=31.78 Aligned_cols=99 Identities=17% Similarity=0.104 Sum_probs=58.9
Q ss_pred HHCCCCCEEECCCCHHHHHHHHHH-HCCC--------------CCHHHHHHHHHHH--HHHCCCHHHHHHHHHHHCCC--
Q ss_conf 732364023010000168886542-0000--------------0004578988652--11000000887776542002--
Q gi|254780636|r 70 LVDEKREKIFHYGRFDIAVLFYTF-GVRV--------------RPVFCTKIASRLT--RTYTNQHGLKDNLKELLGIN-- 130 (207)
Q Consensus 70 l~d~~i~KV~Hn~~~D~~~L~~~~-gi~~--------------~~i~DT~ias~l~--~~~~~~~~L~~L~~~~lg~~-- 130 (207)
+.+.+.+.||||+-+|+..+.+.| |..| ..++||...+... ......-+|..+.+.+-...
T Consensus 272 l~~~kkpiVgHN~~~Dl~~l~~~F~gpLP~~~~eFk~~v~~lFP~i~DTK~la~~~~~~~~~~~t~L~~l~~~l~~~~~~ 351 (507)
T 3d45_A 272 IANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFD 351 (507)
T ss_dssp HHHHCCEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTTCC
T ss_pred HHHCCCEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 97259839992438889999998428899679999999999777505888776316744467787699999998325789
Q ss_pred -----CCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----4675200365654432368999986459999999999999997
Q gi|254780636|r 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 (207)
Q Consensus 131 -----ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~~ 173 (207)
........+++. ++.+=|+.|++.|-.++-++...|..
T Consensus 352 ~~~i~~~~~~~~~~~~~-----~~~HeAGyDA~mTg~vF~~l~~~l~~ 394 (507)
T 3d45_A 352 PPKVESAEGFPSYDTAS-----EQLHEAGYDAYITGLCFISMANYLGS 394 (507)
T ss_dssp CCCEEECTTSCCCC---------CCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCEECCCCCCCCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98342265666555678-----88735388899999999999999731