HHsearch results for GI: 254780636 and protein with PDBid: 3k59_A
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli k-12} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=95.83 E-value=0.0074 Score=34.60 Aligned_cols=142 Identities=15% Similarity=0.098 Sum_probs=73.7
Q ss_pred CCCEEEECCCCCCCCCCCEEEEEEEEECCCC-EEEECCCC-CC--------------CCCHHHHHHH--HCCCCCEEECC
Q ss_conf 9827997177789854450799998418942-89974657-78--------------5706776777--32364023010
Q gi|254780636|r 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGT-VDIIRIAA-GQ--------------KNAPNLVGML--VDEKREKIFHY 81 (207)
Q Consensus 20 ~~~iaiDtEt~~l~~~~~~l~LiQl~~~~~~-~~l~~~~~-~~--------------~~~~~L~~ll--~d~~i~KV~Hn 81 (207)
-.+++||.|+.+-+ ++.-|.+...... ++.+.... .. .....+..++ .||+|+ +|||
T Consensus 153 l~vlsfDIE~~~~~----~i~~I~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~sE~~LL~~F~~~i~~~DPDII-~GyN 227 (786)
T 3k59_A 153 LKWVSIDIETTRHG----ELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVASRPQLLEKLNAWFANYDPDVI-IGWN 227 (786)
T ss_dssp CCEEEEEEEECTTS----CEEEEEEEETTEEEEEEESSCCSCCTTCSSEEEEESSHHHHHHHHHHHHHHHCCSEE-EESS
T ss_pred CEEEEEEEEECCCC----CEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEE-EECC
T ss_conf 14899988975889----889999856998389999467777777753899969999999999999997099999-9728
Q ss_pred C-CHHHHHHHHHH---HCC-------------------------CCC--HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 0-00168886542---000-------------------------000--0457898865211000000887776542002
Q gi|254780636|r 82 G-RFDIAVLFYTF---GVR-------------------------VRP--VFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 (207)
Q Consensus 82 ~-~~D~~~L~~~~---gi~-------------------------~~~--i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ 130 (207)
. .||+..|.+.. |+. ..+ ++|+.-..+-.-....+++|.++++++||..
T Consensus 228 i~~FDlpyL~~Ra~~~~i~~~lgr~~~~~~~~~~~~~~~~~~~~i~Gr~~iD~~~~~~~~~~~~~sy~L~~va~~~L~~~ 307 (786)
T 3k59_A 228 VVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEG 307 (786)
T ss_dssp TTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHTTCCCSCCSHHHHHHHHHCCC
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEHHHHHHHHHHHHCCCCCCHHHHHHHHCCCC
T ss_conf 86867999999999818973026767502300134346537871076880899999999752554378899999975788
Q ss_pred CCC--C-CEECC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 467--5-20036----56544323689999864599999999999
Q gi|254780636|r 131 ISK--A-QQSSD----WSADDLSDEQLQYAASDVVHLHALRLQFT 168 (207)
Q Consensus 131 ldK--~-~q~Sd----W~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~ 168 (207)
..- . ..... |... ...-..|+..|+..+..|.+++.
T Consensus 308 k~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~D~~L~~~L~~kl~ 350 (786)
T 3k59_A 308 KSIDNPWDRMDEIDRRFAED--KPALATYNLKNCELVTQIFHKTE 350 (786)
T ss_dssp CC-CCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHCCHHH--HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 66678677534554246145--88999999888999999999856