HHsearch results for GI: 254780636 and protein with PDBid: 3m8r_A
>3m8r_A DNA polymerase I, thermostable; DNA polymerase, DNA replication, nucleotides, modified nucleotide, artificial nucleotide; HET: DNA DOC HXZ 15P; 2.00A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 1ktq_A* 5ktq_A* 4ktq_A* 1qtm_A* 2ktq_A* 1qss_A* 1qsy_A*
Probab=99.90 E-value=5e-24 Score=157.65 Aligned_cols=155 Identities=14% Similarity=-0.002 Sum_probs=121.8
Q ss_pred CCCCCCCCCCCEEEEEEEEECC-CCEEEECCCCC--CCCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCCHHHH
Q ss_conf 1777898544507999984189-42899746577--85706776777323640230100001688865420000000457
Q gi|254780636|r 27 TETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAG--QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103 (207)
Q Consensus 27 tEt~~l~~~~~~l~LiQl~~~~-~~~~l~~~~~~--~~~~~~L~~ll~d~~i~KV~Hn~~~D~~~L~~~~gi~~~~i~DT 103 (207)
.||+++.|..+.++++.+|.++ ..++++++... .........+.....+.|++||.++|+.+|..+.||.+.++|||
T Consensus 2 ~e~~~~~p~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~Gi~~~~~~Dt 81 (540)
T 3m8r_A 2 LEEAPWPPPEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAPEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDP 81 (540)
T ss_dssp CEEECSSCCTTCEEEEEESSSCTTTCCEEEEEEEETTEEEECSSHHHHGGGCSCBCSTTHHHHHHHHHHTTCCCCBCCCH
T ss_pred CCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 88789998884189999985588737864012234453222257998634346777568887999999679988997718
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHH-
Q ss_conf 89886521100000088777654200246752003656544323689999864599999999999999974-9189999-
Q gi|254780636|r 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL-GRSDLAT- 181 (207)
Q Consensus 104 ~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~~~-~~~~~~~- 181 (207)
||||+++++ .+|||..++++|+|.. ..|||.||.++++||+.|.++|.++ ++.++|.
T Consensus 82 mlaa~ll~~--~~~~l~~la~~~l~~~-------------------~~YA~~Da~~t~~L~~~l~~~L~~~~~l~~ly~~ 140 (540)
T 3m8r_A 82 MLLAYLLDP--SNTTPEGVARRYGGEW-------------------TEEAGERAALSERLFANLWGRLEGEERLLWLYRE 140 (540)
T ss_dssp HHHHHHHCT--TCCCHHHHHHHHTCCC-------------------CSCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHCC--CCCCHHHHHHHHCCCC-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998399--8998699999977521-------------------5889999999999999999998602558999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9996400689998667988884
Q gi|254780636|r 182 SCCNFLMDRAELDLLGWENVDI 203 (207)
Q Consensus 182 ~e~~~l~~~~~me~~g~~~~~~ 203 (207)
.|++++|++++||.+|++ +|.
T Consensus 141 iE~pl~~vLa~ME~~Gi~-vD~ 161 (540)
T 3m8r_A 141 VERPLSAVLAHMEATGVR-LDV 161 (540)
T ss_dssp THHHHHHHHHHHHHHCBE-ECH
T ss_pred HHHHHHHHHHHHHHCCEE-EEH
T ss_conf 986899999999974999-829