HHsearch results for GI: 254780636 and protein with PDBid: 3m8r_A

>3m8r_A DNA polymerase I, thermostable; DNA polymerase, DNA replication, nucleotides, modified nucleotide, artificial nucleotide; HET: DNA DOC HXZ 15P; 2.00A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 1ktq_A* 5ktq_A* 4ktq_A* 1qtm_A* 2ktq_A* 1qss_A* 1qsy_A*
Probab=99.90  E-value=5e-24  Score=157.65  Aligned_cols=155  Identities=14%  Similarity=-0.002  Sum_probs=121.8

Q ss_pred             CCCCCCCCCCCEEEEEEEEECC-CCEEEECCCCC--CCCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCCHHHH
Q ss_conf             1777898544507999984189-42899746577--85706776777323640230100001688865420000000457
Q gi|254780636|r   27 TETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAG--QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT  103 (207)
Q Consensus        27 tEt~~l~~~~~~l~LiQl~~~~-~~~~l~~~~~~--~~~~~~L~~ll~d~~i~KV~Hn~~~D~~~L~~~~gi~~~~i~DT  103 (207)
                      .||+++.|..+.++++.+|.++ ..++++++...  .........+.....+.|++||.++|+.+|..+.||.+.++|||
T Consensus         2 ~e~~~~~p~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~Gi~~~~~~Dt   81 (540)
T 3m8r_A            2 LEEAPWPPPEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAPEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDP   81 (540)
T ss_dssp             CEEECSSCCTTCEEEEEESSSCTTTCCEEEEEEEETTEEEECSSHHHHGGGCSCBCSTTHHHHHHHHHHTTCCCCBCCCH
T ss_pred             CCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf             88789998884189999985588737864012234453222257998634346777568887999999679988997718


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHH-
Q ss_conf             89886521100000088777654200246752003656544323689999864599999999999999974-9189999-
Q gi|254780636|r  104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL-GRSDLAT-  181 (207)
Q Consensus       104 ~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~~~-~~~~~~~-  181 (207)
                      ||||+++++  .+|||..++++|+|..                   ..|||.||.++++||+.|.++|.++ ++.++|. 
T Consensus        82 mlaa~ll~~--~~~~l~~la~~~l~~~-------------------~~YA~~Da~~t~~L~~~l~~~L~~~~~l~~ly~~  140 (540)
T 3m8r_A           82 MLLAYLLDP--SNTTPEGVARRYGGEW-------------------TEEAGERAALSERLFANLWGRLEGEERLLWLYRE  140 (540)
T ss_dssp             HHHHHHHCT--TCCCHHHHHHHHTCCC-------------------CSCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHCC--CCCCHHHHHHHHCCCC-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999998399--8998699999977521-------------------5889999999999999999998602558999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9996400689998667988884
Q gi|254780636|r  182 SCCNFLMDRAELDLLGWENVDI  203 (207)
Q Consensus       182 ~e~~~l~~~~~me~~g~~~~~~  203 (207)
                      .|++++|++++||.+|++ +|.
T Consensus       141 iE~pl~~vLa~ME~~Gi~-vD~  161 (540)
T 3m8r_A          141 VERPLSAVLAHMEATGVR-LDV  161 (540)
T ss_dssp             THHHHHHHHHHHHHHCBE-ECH
T ss_pred             HHHHHHHHHHHHHHCCEE-EEH
T ss_conf             986899999999974999-829