Query         gi|254780636|ref|YP_003065049.1| ribonuclease D [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 207
No_of_seqs    126 out of 2436
Neff          6.8 
Searched_HMMs 23785
Date          Tue May 31 18:21:46 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780636.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1yt3_A Ribonuclease D, RNAse D 100.0       0       0  307.9  15.6  188    2-192     1-191 (375)
  2 2hbj_A Exosome complex exonucl 100.0       0       0  295.4  14.4  176   10-188    95-271 (410)
  3 3cym_A Uncharacterized protein 100.0       0       0  288.9  13.5  175   10-189    26-205 (440)
  4 2e6m_A Werner syndrome ATP-dep 100.0 1.1E-37 4.6E-42  237.0  11.1  167   17-183    37-207 (208)
  5 2hhv_A DNA polymerase I; DNA r 100.0 1.2E-34 4.9E-39  219.4  11.7  180   20-203    17-201 (580)
  6 1vk0_A Hypothetical protein; h 100.0 8.3E-34 3.5E-38  214.5  10.9  151   17-169    43-205 (206)
  7 2kfn_A Klenow fragment of DNA  100.0   2E-31 8.4E-36  200.6  11.6  199    3-203     6-226 (605)
  8 1x9m_A DNA polymerase; DNA plo  99.9   1E-25 4.4E-30  167.4  10.9  177   22-203     1-230 (698)
  9 3m8r_A DNA polymerase I, therm  99.9   5E-24 2.1E-28  157.6   8.6  155   27-203     2-161 (540)
 10 1bgx_T TAQ DNA polymerase; DNA  99.7 6.3E-18 2.6E-22  122.2   7.4  146   24-203   306-453 (832)
 11 1wlj_A Interferon stimulated g  99.4 1.1E-12 4.6E-17   91.7   8.2  143   18-175     3-173 (189)
 12 2p1j_A POLIII, DNA polymerase   99.1 3.1E-10 1.3E-14   77.5   6.9  142   14-177     6-182 (186)
 13 2is3_A Ribonuclease T; RNAse,   99.0 9.9E-10 4.2E-14   74.5   8.2  142   18-179    15-209 (215)
 14 2ioc_B Three prime repair exon  98.7 4.4E-08 1.9E-12   65.0   8.5  134   20-171    12-215 (242)
 15 1y97_A Three prime repair exon  98.6 2.5E-07 1.1E-11   60.6   8.8   82   74-171   113-210 (238)
 16 2f96_A Ribonuclease T; RNAse,   98.6 3.9E-07 1.6E-11   59.4   9.8   86   76-176   128-218 (224)
 17 2qxf_A Exodeoxyribonuclease I;  98.4 3.6E-06 1.5E-10   53.9  10.7  134   18-170     7-200 (482)
 18 3ikm_A DNA polymerase subunit   98.2 2.3E-06 9.9E-11   54.9   6.0   99   73-173   194-349 (1172)
 19 2gui_A DNA polymerase III epsi  97.9 3.5E-05 1.5E-09   48.1   7.2  133   18-168     7-182 (194)
 20 2d5r_A CCR4-NOT transcription   97.6 0.00033 1.4E-08   42.4   8.3  141   16-174    20-238 (252)
 21 2xri_A ERI1 exoribonuclease 3;  97.6 0.00034 1.4E-08   42.4   8.2  133   22-170    33-213 (224)
 22 1qht_A Protein (DNA polymerase  97.6  0.0023 9.6E-08   37.6  12.4  165    4-171   107-330 (775)
 23 1uoc_A POP2; hydrolase, DEDD n  97.5  0.0014 5.8E-08   38.8  10.6  140   16-171    34-265 (289)
 24 1s5j_A DNA polymerase I; repli  97.4  0.0011 4.7E-08   39.3   9.6  145   19-167   189-389 (847)
 25 2py5_A DNA polymerase; protein  97.3  0.0035 1.5E-07   36.5  11.1  142   20-170     6-183 (575)
 26 2p51_A SPCC18.06C protein; DED  97.3 0.00094   4E-08   39.8   7.9  140   16-173    41-258 (333)
 27 3nae_A DNA polymerase, GP43; R  96.8  0.0059 2.5E-07   35.2   8.0   97   71-169   208-340 (903)
 28 2gv9_A DNA polymerase; polymer  96.7  0.0046 1.9E-07   35.8   7.0   97   71-169   415-552 (1193)
 29 3iay_A DNA polymerase delta ca  96.5   0.012 4.9E-07   33.4   7.9  102   66-169   320-467 (919)
 30 2gbz_A Oligoribonuclease; ORN,  96.1  0.0022 9.4E-08   37.6   2.5   28   17-46      6-33  (194)
 31 2igi_A Oligoribonuclease; RNAs  96.0  0.0028 1.2E-07   37.1   2.5   27   18-46      3-29  (180)
 32 3k59_A POL II, DNA polymerase   95.8  0.0074 3.1E-07   34.6   4.1  142   20-168   153-350 (786)
 33 1w0h_A 3'-5' exonuclease ERI1;  95.4    0.11 4.6E-06   27.8  11.1   77   78-170   109-194 (204)
 34 3d45_A Poly(A)-specific ribonu  95.4   0.023 9.5E-07   31.8   5.2   99   70-173   272-394 (507)
 35 1noy_A Protein (DNA polymerase  95.1    0.14 5.8E-06   27.2  10.4   95   71-167   205-335 (388)
 36 3cg7_A CRN-4, cell death-relat  94.4    0.22 9.1E-06   26.1   9.5  134   21-170    20-208 (308)
 37 2a1r_A Poly(A)-specific ribonu  92.9    0.18 7.8E-06   26.5   5.5   99   70-173   277-399 (430)
 38 1zbu_A ERI-1 homolog, 3'-5' ex  89.0    0.97 4.1E-05   22.3   7.9   74   80-169   229-311 (349)
 39 1zbh_A 3'-5' exonuclease ERI1;  73.5       4 0.00017   18.7  11.3   76   78-169   177-261 (299)
 40 2hwk_A Helicase NSP2; rossman   33.6      20 0.00085   14.6   2.3   16  141-156   300-315 (320)
 41 2vwa_A Putative uncharacterize  27.9      25  0.0011   14.1   3.8   25  145-169    42-66  (101)

No 1  
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=100.00  E-value=0  Score=307.87  Aligned_cols=188  Identities=24%  Similarity=0.361  Sum_probs=167.5

Q ss_pred             CCEEECCC--CCCHHH-HCCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHCCCCCEE
Q ss_conf             72153257--888578-424898279971777898544507999984189428997465778570677677732364023
Q gi|254780636|r    2 TTIRVHEG--DIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI   78 (207)
Q Consensus         2 ~~~~~~~~--dl~~~~-~l~~~~~iaiDtEt~~l~~~~~~l~LiQl~~~~~~~~l~~~~~~~~~~~~L~~ll~d~~i~KV   78 (207)
                      |||+++..  +|.+.+ .++.+++|||||||+++++|++++||||||++++ +|++++.... ....|+++|+|++|+||
T Consensus         1 m~y~~I~t~~~L~~~~~~l~~~~~ia~DtE~~~~~ty~~~l~LiQi~~~~~-~~liD~l~~~-~~~~L~~ll~~~~i~kv   78 (375)
T 1yt3_A            1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEH-LALIDPLGIT-DWSPLKAILRDPSITKF   78 (375)
T ss_dssp             CCCEEECSHHHHHHHHHHHTTSSEEEEEEEEECCSCSSCEEEEEEEECSSC-EEEECGGGCS-CCHHHHHHHHCTTSEEE
T ss_pred             CCEEEECCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEEEECCE-EEEEECCCCC-CHHHHHHHHHCCCCEEE
T ss_conf             927998989999999999847990899798489888888789999876892-7999658987-78999999819886199


Q ss_pred             ECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf             01000016888654200000004578988652110000008877765420024675200365654432368999986459
Q gi|254780636|r   79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV  158 (207)
Q Consensus        79 ~Hn~~~D~~~L~~~~gi~~~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~  158 (207)
                      |||+++|+.+|.+++|+.+.|+||||+|+.+++ ++.++||+.+++++||++++|+.|+|||+.||||++|+.|||.||+
T Consensus        79 ~h~~~~D~~~L~~~~~~~~~~~fDt~ia~~~~~-~~~~~~l~~l~~~~l~~~l~K~~~~sdW~~rPLs~~ql~YAa~Dv~  157 (375)
T 1yt3_A           79 LHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG-RPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVW  157 (375)
T ss_dssp             ESSCHHHHHHHHHHHSSCCSSEEEHHHHHHHTT-CCTTCCHHHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHHHHHHHH
T ss_pred             EECHHHHHHHHHHHCCCCCCCEEECHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHCCCE
T ss_conf             725586799999964988887166388898838-7506788899999864503305545222566687899999840732


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999974918999999964006899
Q gi|254780636|r  159 HLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE  192 (207)
Q Consensus       159 ~l~~L~~~l~~~L~~~~~~~~~~~e~~~l~~~~~  192 (207)
                      ||++||+.|.++|.+.|+.+|+.+||+.+.....
T Consensus       158 ~l~~l~~~l~~~L~~~~~~~~~~ee~~~l~~~~~  191 (375)
T 1yt3_A          158 YLLPITAKLMVETEASGWLPAALDECRLMQMRRQ  191 (375)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             3799999999877630004678999999874431


No 2  
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=100.00  E-value=0  Score=295.35  Aligned_cols=176  Identities=22%  Similarity=0.204  Sum_probs=159.0

Q ss_pred             CCCHHH-HCCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHCCCCCEEECCCCHHHHH
Q ss_conf             888578-4248982799717778985445079999841894289974657785706776777323640230100001688
Q gi|254780636|r   10 DIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV   88 (207)
Q Consensus        10 dl~~~~-~l~~~~~iaiDtEt~~l~~~~~~l~LiQl~~~~~~~~l~~~~~~~~~~~~L~~ll~d~~i~KV~Hn~~~D~~~   88 (207)
                      +|.+.+ .++.++.|||||||++.+++++++||||+|++++ +|++++.........|+++|+|++|+|||||+++|+.+
T Consensus        95 ~L~~~~~~L~~~~~iavDtE~~~~~t~~~~l~LiQi~t~~~-~~liD~l~l~~~l~~L~~ll~d~~I~KV~H~~~~Dl~~  173 (410)
T 2hbj_A           95 ELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRER-DYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIW  173 (410)
T ss_dssp             HHHHHHHHHTTCSEEEEEEEEECSSSSSCEEEEEEEECSSC-EEEEETTTTTTTGGGGHHHHTCTTSEEEESSCHHHHHH
T ss_pred             HHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEEEEECCC-CEEEEECCCCCCHHHHHHHHCCCCCEEEEECHHHHHHH
T ss_conf             99999999845991999704778851677068999981897-78985014533589999997499942999557877999


Q ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             86542000000045789886521100000088777654200246752003656544323689999864599999999999
Q gi|254780636|r   89 LFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT  168 (207)
Q Consensus        89 L~~~~gi~~~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~  168 (207)
                      |.+++|+.+.|+||||+|+++++.  .++||+.|+++|||++++|+.|+|||++||||++|+.|||.||+||++||+.|.
T Consensus       174 L~~~~g~~~~~~fDT~ia~~~l~~--~~~sL~~L~~~~l~~~l~K~~q~sDW~~RPL~~~qi~YAa~Dv~~Ll~ly~~L~  251 (410)
T 2hbj_A          174 LQRDLGLYVVGLFDTYHASKAIGL--PRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLR  251 (410)
T ss_dssp             HHHHHCCCCSSEEEHHHHHHHHTC--SCCSHHHHHHHHSCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHCCCCCCCCCCHHHHHHHCCC--CCCCHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             998457567872026999998098--875699999987366656413342004555879999999853788999999999


Q ss_pred             HHHHHCCCHHHHHHHHHHHH
Q ss_conf             99997491899999996400
Q gi|254780636|r  169 EKLQRLGRSDLATSCCNFLM  188 (207)
Q Consensus       169 ~~L~~~~~~~~~~~e~~~l~  188 (207)
                      ++|.+.|+++|+.+||+.+.
T Consensus       252 ~~L~~~~~l~~~~ee~~~~~  271 (410)
T 2hbj_A          252 NKLIESNKLAGVLYESRNVA  271 (410)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHH
T ss_conf             99997666589999999999


No 3  
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function, ribonuclease D, exonuclease; 2.10A {Bifidobacterium adolescentis ATCC15703}
Probab=100.00  E-value=0  Score=288.94  Aligned_cols=175  Identities=21%  Similarity=0.307  Sum_probs=149.8

Q ss_pred             CCCHHHH-C-CCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEECCCC---CCCCCHHHHHHHHCCCCCEEECCCCH
Q ss_conf             8885784-2-48982799717778985445079999841894289974657---78570677677732364023010000
Q gi|254780636|r   10 DIPAECA-A-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA---GQKNAPNLVGMLVDEKREKIFHYGRF   84 (207)
Q Consensus        10 dl~~~~~-l-~~~~~iaiDtEt~~l~~~~~~l~LiQl~~~~~~~~l~~~~~---~~~~~~~L~~ll~d~~i~KV~Hn~~~   84 (207)
                      +|.+.+. + +..++|||||||+++++|++++|||||++.++.+|+|++..   .......|++++.  +|+|||||+++
T Consensus        26 ~l~~~~~~L~~~~~~iavDtE~~~~~~y~~~~~LvQi~~~g~~~~liDp~~~~~~~~~~~~L~~~l~--~i~kv~H~~~~  103 (440)
T 3cym_A           26 AFRDYCSELASSHGSLAADAERASGFRYGHEDWLVQFKRDGAGIGLLDPQALAAAGADWNDFNRAVG--DAVWILHDSLQ  103 (440)
T ss_dssp             HHHHHHHHHHSCEEEEEEEEEECTTTSSSCCEEEEEEEEETTEEEEECHHHHHHTTCCHHHHHHHHT--TCEEEESSHHH
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHC--CCEEEEECCHH
T ss_conf             9999999997179918997986788806874789998678988799805555655531799999867--98199977478


Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             16888654200000004578988652110000008877765420024675200365654432368999986459999999
Q gi|254780636|r   85 DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR  164 (207)
Q Consensus        85 D~~~L~~~~gi~~~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~  164 (207)
                      |+.+|.+ +|+.|.|+||||+|+++++ . .++||+.|++++||++++|+.|+|||++||||++|+.|||.||.||++||
T Consensus       104 Dl~~l~~-~g~~~~~~fDTqiAa~~lg-~-~~~gl~~l~~~~lg~~l~K~~~~sdW~~rPLs~~q~~YAa~Dv~~L~~l~  180 (440)
T 3cym_A          104 DLPGFDE-LGMEPQRLFDTEIAARLLG-L-KRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELE  180 (440)
T ss_dssp             HHHHHHH-HTCCCCEEEEHHHHHHHTT-C-SSCSHHHHHHHHHCEECCCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHH-CCCCCCCCHHHHHHHHHCC-C-CCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9999998-7881288122999998728-8-87779999999947665638888761787788899999986067789999


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             9999999974918999999964006
Q gi|254780636|r  165 LQFTEKLQRLGRSDLATSCCNFLMD  189 (207)
Q Consensus       165 ~~l~~~L~~~~~~~~~~~e~~~l~~  189 (207)
                      +.|.++|.+.++.+|+++||..+-.
T Consensus       181 ~~l~~~L~~~~~~~~~~ee~~~~~~  205 (440)
T 3cym_A          181 TKMRAELKRQGKMEWAQEEFDYALK  205 (440)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             9999999871217889999999985


No 4  
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=100.00  E-value=1.1e-37  Score=237.01  Aligned_cols=167  Identities=18%  Similarity=0.142  Sum_probs=144.5

Q ss_pred             CCCCCCEEEECCCC--CCCCCCCEEEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHHH
Q ss_conf             24898279971777--8985445079999841894289974657785706776777323640230100001688865420
Q gi|254780636|r   17 ARYVDAIAVDTETL--GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG   94 (207)
Q Consensus        17 l~~~~~iaiDtEt~--~l~~~~~~l~LiQl~~~~~~~~l~~~~~~~~~~~~L~~ll~d~~i~KV~Hn~~~D~~~L~~~~g   94 (207)
                      +...++|||||||+  ......+++|+||+|++++.|+++++......++.|+++|+|++|.|||||+++|+..|.+++|
T Consensus        37 l~~~~vig~D~E~~~~~~~~~~~~v~liQla~~~~~~~i~~~~~~~~~~~~L~~lL~~~~i~Kvg~~~~~D~~~L~~~~~  116 (208)
T 2e6m_A           37 LSDGDVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFD  116 (208)
T ss_dssp             CCTTCEEEEEEECCC---CCSCCCCCEEEEECSSSEEEEECGGGCSSCCHHHHHHHTCTTSEEEESSHHHHHHHHHHHHC
T ss_pred             HCCCCEEEEECEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             54899899977017887888548678999986898789993676663439999997699823034337518999843022


Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC--CCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             000000457898865211000000887776542002467--520036565443236899998645999999999999999
Q gi|254780636|r   95 VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ  172 (207)
Q Consensus        95 i~~~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK--~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~  172 (207)
                      +.+.|++|++.++........++||+.+++++||.+++|  +.|+|||++||||++|+.|||.||++++.||++|.+..+
T Consensus       117 ~~~~~~~d~~~~~~~~~~~~~~~~l~~l~~~~l~~~~~k~k~~q~s~W~~rpLt~~qi~YAA~Da~~~~~l~~~L~~~~~  196 (208)
T 2e6m_A          117 VKLESFVELTDVANEKLKCAETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGD  196 (208)
T ss_dssp             CCCCSEEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBCCCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred             CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             34573121538999981587653599999998293214207553477765889999999999999999999999986115


Q ss_pred             HCCCHHHHHHH
Q ss_conf             74918999999
Q gi|254780636|r  173 RLGRSDLATSC  183 (207)
Q Consensus       173 ~~~~~~~~~~e  183 (207)
                      +....+++++|
T Consensus       197 ~~~~~~~~~~~  207 (208)
T 2e6m_A          197 TVQVFALNKAE  207 (208)
T ss_dssp             -----------
T ss_pred             HHHHHHHHHHC
T ss_conf             18899988741


No 5  
>2hhv_A DNA polymerase I; DNA replication, klenow fragment, protein- DNA complex, O6-methyl-guanine, transferase/DNA complex; HET: DNA 6OG SUC; 1.55A {Geobacillus stearothermophilus} SCOP: c.55.3.5 e.8.1.1 PDB: 2hhs_A* 2hht_A* 2hhu_A* 2hhq_A* 2hhx_A* 2hw3_A* 1nk4_A* 1l3t_A* 1l3u_A* 1l3v_A* 1l5u_A* 1njw_A* 1l3s_A* 1njy_A* 1njz_A* 1nk0_A* 1njx_A* 1nk5_A* 1nk6_A* 1nk7_A* ...
Probab=100.00  E-value=1.2e-34  Score=219.40  Aligned_cols=180  Identities=16%  Similarity=0.100  Sum_probs=153.0

Q ss_pred             CCCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCC
Q ss_conf             98279971777898544507999984189428997465778570677677732364023010000168886542000000
Q gi|254780636|r   20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP   99 (207)
Q Consensus        20 ~~~iaiDtEt~~l~~~~~~l~LiQl~~~~~~~~l~~~~~~~~~~~~L~~ll~d~~i~KV~Hn~~~D~~~L~~~~gi~~~~   99 (207)
                      ++.+||||||+|++++.+++++|++|.+++.+|+++....  ..+.|+++|+|+++.||+||++||+.+|.++ |+.+++
T Consensus        17 ~~~~a~~~e~~~~~~~~~~ivGis~~~~~~~~~y~p~~~~--~~~~l~~~l~d~~~~ki~hN~k~D~~~L~~~-Gi~l~g   93 (580)
T 2hhv_A           17 ADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETAL--ADPQFVAWLGDETKKKSMFDSKRAAVALKWK-GIELCG   93 (580)
T ss_dssp             CSEEEEEEECCSSSCTTCCCCEEEEEETTEEEEECHHHHT--TCHHHHHHHHCTTSEEEESSHHHHHHHHHTT-TCCCCC
T ss_pred             CCCCEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCC--CHHHHHHHHCCCCCCEEEEEHHHHHHHHHHC-CCCCCC
T ss_conf             7884799976999735072899999966977999453546--6489999966999865885279999999978-882799


Q ss_pred             H-HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             0-457898865211000000887776542002467520036---565443236899998645999999999999999749
Q gi|254780636|r  100 V-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG  175 (207)
Q Consensus       100 i-~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~Sd---W~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~~~~  175 (207)
                      + ||||||++++++....++|+.+++++++..+.+......   +...|-.+....|||.||.++++||+.|.++|.+.+
T Consensus        94 ~~~DTmiaa~ll~~~~~~~~L~~l~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~Ya~~Da~~t~~L~~~l~~~l~~~~  173 (580)
T 2hhv_A           94 VSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNE  173 (580)
T ss_dssp             EEEEHHHHHHHHCGGGCCCSHHHHHHTTTCCSSCCHHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CEEHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             73289999997599999888999999867998784887518771002632799999999999999999999999975434


Q ss_pred             CHHHHH-HHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             189999-9996400689998667988884
Q gi|254780636|r  176 RSDLAT-SCCNFLMDRAELDLLGWENVDI  203 (207)
Q Consensus       176 ~~~~~~-~e~~~l~~~~~me~~g~~~~~~  203 (207)
                      +..+|. .|++++|++++||.+|++ +|.
T Consensus       174 l~~~~~~iE~pl~~vL~~ME~~Gi~-vD~  201 (580)
T 2hhv_A          174 QDRLLVELEQPLSSILAEMEFAGVK-VDT  201 (580)
T ss_dssp             CHHHHHTTHHHHHHHHHHHHHHCEE-ECH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCEE-EEH
T ss_conf             3314888997789999999745988-708


No 6  
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, structural genomics, protein structure initiative, center for eukaryotic structural genomics; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=100.00  E-value=8.3e-34  Score=214.46  Aligned_cols=151  Identities=15%  Similarity=0.074  Sum_probs=124.9

Q ss_pred             CCCCCCEEEECCCCCC--------CCCCCEEEEEEEEECCCCEEEECCCC-CCCCCHHHHHHHHCCCCCEEECCCCHHHH
Q ss_conf             2489827997177789--------85445079999841894289974657-78570677677732364023010000168
Q gi|254780636|r   17 ARYVDAIAVDTETLGL--------MPRRDRLCIVQLSPGDGTVDIIRIAA-GQKNAPNLVGMLVDEKREKIFHYGRFDIA   87 (207)
Q Consensus        17 l~~~~~iaiDtEt~~l--------~~~~~~l~LiQl~~~~~~~~l~~~~~-~~~~~~~L~~ll~d~~i~KV~Hn~~~D~~   87 (207)
                      +....+|||||||...        .....++|+||||+++ .|+++++.+ ....++.|+++|+|++|+||||++++|+.
T Consensus        43 ~~~~~~ig~D~EW~~~~~~~~~~~~~~~~~valiQl~t~~-~~~li~l~~~~~~~~~~L~~~L~~~~i~KVG~~i~~D~~  121 (206)
T 1vk0_A           43 LNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRN-LCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLD  121 (206)
T ss_dssp             HHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSS-EEEEEECCSSCCGGGHHHHHHHTCSSSEEEESSCHHHHH
T ss_pred             HCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECC-CEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECHHHHHH
T ss_conf             2379669998004787766776553357615999998689-389998882111107999999659981599962698899


Q ss_pred             HHHHHHHCCCCCHHHHHHHH-HHHH-HHCCCHHHHHHHHHHHCCCCCCCCE-ECCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             88654200000004578988-6521-1000000887776542002467520-0365654432368999986459999999
Q gi|254780636|r   88 VLFYTFGVRVRPVFCTKIAS-RLTR-TYTNQHGLKDNLKELLGINISKAQQ-SSDWSADDLSDEQLQYAASDVVHLHALR  164 (207)
Q Consensus        88 ~L~~~~gi~~~~i~DT~ias-~l~~-~~~~~~~L~~L~~~~lg~~ldK~~q-~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~  164 (207)
                      .|.+++|+.+++++|++..+ .... +...++||+.|++++||+.++|..+ +|+|. ||||++|+.|||.||+++++||
T Consensus       122 ~L~~~~gi~~~~~vDl~~~a~~~~~~~~~~~~~l~~L~~~~lg~~l~K~~~~~s~W~-~pLs~~Qi~YAA~DA~~~~~iy  200 (206)
T 1vk0_A          122 LLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWE-KAGPEEQLEAAAIEGWLIVNVW  200 (206)
T ss_dssp             HHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHHHHHHHTGG-GSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCCEEECHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCEECCCCC-CCCCHHHHHHHHHHHHHHHHHH
T ss_conf             985124976553552569999873254413100999999976986786765214876-8899999999999899999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254780636|r  165 LQFTE  169 (207)
Q Consensus       165 ~~l~~  169 (207)
                      ++|.+
T Consensus       201 ~~L~~  205 (206)
T 1vk0_A          201 DQLSD  205 (206)
T ss_dssp             HHHHH
T ss_pred             HHHHC
T ss_conf             99852


No 7  
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.97  E-value=2e-31  Score=200.64  Aligned_cols=199  Identities=20%  Similarity=0.167  Sum_probs=156.8

Q ss_pred             CEEECCC--CCCHHHH-CCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCC----------CHHHHHH
Q ss_conf             2153257--8885784-2489827997177789854450799998418942899746577857----------0677677
Q gi|254780636|r    3 TIRVHEG--DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----------APNLVGM   69 (207)
Q Consensus         3 ~~~~~~~--dl~~~~~-l~~~~~iaiDtEt~~l~~~~~~l~LiQl~~~~~~~~l~~~~~~~~~----------~~~L~~l   69 (207)
                      ||+.+.+  +|...+. +...+.+||||||+|++++.+++++||+|..++.++++|+.+....          ...|+++
T Consensus         6 ~y~~i~~~~~l~~~~~~l~~~~~~a~D~ETt~ld~~~~~ivgis~s~~~~~~~yipi~h~~~~~~~~~~~~~vl~~Lk~~   85 (605)
T 2kfn_A            6 NYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKPL   85 (605)
T ss_dssp             SSEECCSHHHHHHHHHHHHTSSSEEEEEEESCSCTTTCCEEEEEEEEETTEEEEEECCCCSTTCCCCCCHHHHHHHHHHH
T ss_pred             CCEEECCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             65288989999999999852994999831799983657499999982498599998226667775558999999999999


Q ss_pred             HHCCCCCEEECCCCHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCC--
Q ss_conf             732364023010000168886542000000-04578988652110000008877765420024675200365654432--
Q gi|254780636|r   70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLS--  146 (207)
Q Consensus        70 l~d~~i~KV~Hn~~~D~~~L~~~~gi~~~~-i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs--  146 (207)
                      |+|+++.||+||++||+.+|.++ |+.+.+ ++|||+|+++++.....+++..+++++++..+++.....+|++..++  
T Consensus        86 l~~~~i~kV~HNakFD~~~L~~~-Gi~l~~~~~DTmiaa~ll~~~~~~~~l~~~~~~~l~~~~~~~~~~~g~~k~~~~~~  164 (605)
T 2kfn_A           86 LEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFN  164 (605)
T ss_dssp             HTCTTSCEEESSHHHHHHHHHTT-TCCCCCEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCSSTTCCCGG
T ss_pred             HHCCCCCEEEECHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCCHH
T ss_conf             81899979997269999999977-99889840207778777256555565899999863877675898705774438801


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHH-HHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             ----368999986459999999999999997491-89999-9996400689998667988884
Q gi|254780636|r  147 ----DEQLQYAASDVVHLHALRLQFTEKLQRLGR-SDLAT-SCCNFLMDRAELDLLGWENVDI  203 (207)
Q Consensus       147 ----~~Qi~YAA~Dv~~l~~L~~~l~~~L~~~~~-~~~~~-~e~~~l~~~~~me~~g~~~~~~  203 (207)
                          .....|++.|+..+..++..+...+.+... ..++. .|+++.+++++|+..|+. +|.
T Consensus       165 ~~~~~~~~~y~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~lE~pl~~vla~Me~~Gi~-vD~  226 (605)
T 2kfn_A          165 QIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVK-IDP  226 (605)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHHHHHHHHCBC-BCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHH
T ss_conf             22377899999999999999999999999986899999999981738999988440176-529


No 8  
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=99.93  E-value=1e-25  Score=167.38  Aligned_cols=177  Identities=16%  Similarity=0.127  Sum_probs=130.7

Q ss_pred             CEEEECCCCCCCCCCCEEEEEEEEECCC-CEEEECCCCCCCCCHHHHHHHHCCCCCEEECCC-CHHHHHHHHHHHCCC--
Q ss_conf             2799717778985445079999841894-289974657785706776777323640230100-001688865420000--
Q gi|254780636|r   22 AIAVDTETLGLMPRRDRLCIVQLSPGDG-TVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG-RFDIAVLFYTFGVRV--   97 (207)
Q Consensus        22 ~iaiDtEt~~l~~~~~~l~LiQl~~~~~-~~~l~~~~~~~~~~~~L~~ll~d~~i~KV~Hn~-~~D~~~L~~~~gi~~--   97 (207)
                      +|+||+||+||.+..+++..|.+...+. .++.+.........+.++.++++.+.+ ||||+ +||+.+|.+.+|+.+  
T Consensus         1 ~~v~DiET~gL~~~~~~i~~i~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~l-VgHN~~~FD~~~L~k~~g~~~~~   79 (698)
T 1x9m_A            1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYVSYRPSDFGAYLDALEAEVARGGLI-VFHNGHKYDVPALTKLAKLQLNR   79 (698)
T ss_dssp             CEEEEEEESSCGGGCCCEEEEEEEETTTTEEEEECGGGHHHHHHHHHHHHHTTCCE-EESSTTTTHHHHHHHHHHHHHCC
T ss_pred             CEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHCCCEE-EECCCHHCCHHHHHHHHCCCCCC
T ss_conf             98999168997756787999999978997289847654057999999998559969-97572320899998873874233


Q ss_pred             ------CCHHHHHHHHHHHHHH------------CCCHHHHHHHHHHHCCC---------------CCCCCEECCCCCCC
Q ss_conf             ------0004578988652110------------00000887776542002---------------46752003656544
Q gi|254780636|r   98 ------RPVFCTKIASRLTRTY------------TNQHGLKDNLKELLGIN---------------ISKAQQSSDWSADD  144 (207)
Q Consensus        98 ------~~i~DT~ias~l~~~~------------~~~~~L~~L~~~~lg~~---------------ldK~~q~SdW~~rp  144 (207)
                            ..++||||+|+++++.            ...|||+++..+ ||..               ..+....++|..  
T Consensus        80 ~~~~~~~~v~DTmi~s~ll~p~~~~~~~~~~~~~~~~hsL~a~g~r-lg~~K~~~~~~~~~~~~~~~~~~~~~~~~~~--  156 (698)
T 1x9m_A           80 EFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYR-LGEMKGEYKDDFKRMLEEQGEEYVDGMEWWN--  156 (698)
T ss_dssp             CCCCCGGGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHHH-HHHHHHHHHHHHHHHHHHTTCCCCTTGGGTS--
T ss_pred             CCCCCCCCEEEHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHH-HCCCCCCHHHHHHHHHHHCCCCCCCHHHHHH--
T ss_conf             4566778750277887663998644431122026678788999998-5865431377764322210223344133433--


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----------------HHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             323689999864599999999999999974918----------------99999996400689998667988884
Q gi|254780636|r  145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS----------------DLATSCCNFLMDRAELDLLGWENVDI  203 (207)
Q Consensus       145 Ls~~Qi~YAA~Dv~~l~~L~~~l~~~L~~~~~~----------------~~~~~e~~~l~~~~~me~~g~~~~~~  203 (207)
                      +|++|+.||+.||.++++||+.|.+.+...+..                +....|+++.+++++||.+||+ +|+
T Consensus       157 ~s~em~~Ya~~Dv~iT~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lE~~~~~~l~~mE~nG~~-vD~  230 (698)
T 1x9m_A          157 FNEEMMDYNVQDVVVTKALLEKLLSDKHYFPPEIDFTDVGYTTFWSESLEAVDIEHRAAWLLAKQERNGFP-FDT  230 (698)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHTCTTTSCTTSCTTSSCHHHHHHHSCHHHHHHHHHHHHHHHHHHHCEE-BCH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCEE-ECH
T ss_conf             48999999998999999999999998643010012333210001012478999988999999998853989-729


No 9  
>3m8r_A DNA polymerase I, thermostable; DNA polymerase, DNA replication, nucleotides, modified nucleotide, artificial nucleotide; HET: DNA DOC HXZ 15P; 2.00A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 1ktq_A* 5ktq_A* 4ktq_A* 1qtm_A* 2ktq_A* 1qss_A* 1qsy_A*
Probab=99.90  E-value=5e-24  Score=157.65  Aligned_cols=155  Identities=14%  Similarity=-0.002  Sum_probs=121.8

Q ss_pred             CCCCCCCCCCCEEEEEEEEECC-CCEEEECCCCC--CCCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCCHHHH
Q ss_conf             1777898544507999984189-42899746577--85706776777323640230100001688865420000000457
Q gi|254780636|r   27 TETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAG--QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT  103 (207)
Q Consensus        27 tEt~~l~~~~~~l~LiQl~~~~-~~~~l~~~~~~--~~~~~~L~~ll~d~~i~KV~Hn~~~D~~~L~~~~gi~~~~i~DT  103 (207)
                      .||+++.|..+.++++.+|.++ ..++++++...  .........+.....+.|++||.++|+.+|..+.||.+.++|||
T Consensus         2 ~e~~~~~p~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~Gi~~~~~~Dt   81 (540)
T 3m8r_A            2 LEEAPWPPPEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAPEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDP   81 (540)
T ss_dssp             CEEECSSCCTTCEEEEEESSSCTTTCCEEEEEEEETTEEEECSSHHHHGGGCSCBCSTTHHHHHHHHHHTTCCCCBCCCH
T ss_pred             CCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf             88789998884189999985588737864012234453222257998634346777568887999999679988997718


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHH-
Q ss_conf             89886521100000088777654200246752003656544323689999864599999999999999974-9189999-
Q gi|254780636|r  104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL-GRSDLAT-  181 (207)
Q Consensus       104 ~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~~~-~~~~~~~-  181 (207)
                      ||||+++++  .+|||..++++|+|..                   ..|||.||.++++||+.|.++|.++ ++.++|. 
T Consensus        82 mlaa~ll~~--~~~~l~~la~~~l~~~-------------------~~YA~~Da~~t~~L~~~l~~~L~~~~~l~~ly~~  140 (540)
T 3m8r_A           82 MLLAYLLDP--SNTTPEGVARRYGGEW-------------------TEEAGERAALSERLFANLWGRLEGEERLLWLYRE  140 (540)
T ss_dssp             HHHHHHHCT--TCCCHHHHHHHHTCCC-------------------CSCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHCC--CCCCHHHHHHHHCCCC-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999998399--8998699999977521-------------------5889999999999999999998602558999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9996400689998667988884
Q gi|254780636|r  182 SCCNFLMDRAELDLLGWENVDI  203 (207)
Q Consensus       182 ~e~~~l~~~~~me~~g~~~~~~  203 (207)
                      .|++++|++++||.+|++ +|.
T Consensus       141 iE~pl~~vLa~ME~~Gi~-vD~  161 (540)
T 3m8r_A          141 VERPLSAVLAHMEATGVR-LDV  161 (540)
T ss_dssp             THHHHHHHHHHHHHHCBE-ECH
T ss_pred             HHHHHHHHHHHHHHCCEE-EEH
T ss_conf             986899999999974999-829


No 10 
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=99.73  E-value=6.3e-18  Score=122.19  Aligned_cols=146  Identities=14%  Similarity=0.013  Sum_probs=114.5

Q ss_pred             EEECCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCCHHHH
Q ss_conf             99717778985445079999841894289974657785706776777323640230100001688865420000000457
Q gi|254780636|r   24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT  103 (207)
Q Consensus        24 aiDtEt~~l~~~~~~l~LiQl~~~~~~~~l~~~~~~~~~~~~L~~ll~d~~i~KV~Hn~~~D~~~L~~~~gi~~~~i~DT  103 (207)
                      .+++++.+.++....+..+.++.+ +.++.++..        ++. +  .++.|+.|+.++|+.+|..+.|+...++|||
T Consensus       306 ~~~~~~~~~~~~~a~~vg~~~~~~-~~~~~~p~~--------~~~-l--~~l~k~~~~lk~d~~vl~~~~gi~~~~~~Dt  373 (832)
T 1bgx_T          306 FVGFVLSRKEPMWADLLALAAARG-GRVHRAPEP--------YKA-L--RDLKEARGLLAKDLSVLALREGLGLPPGDDP  373 (832)
T ss_dssp             CBEEECSSSCTTTCCCCEEECBSS-SEEECCSCH--------HHH-H--HHCSSBCBTTHHHHHHHHHHHTCCCCBCCCH
T ss_pred             EEEEEECCCCCCHHHHHHHHHCCC-CEEEECCHH--------HHH-H--HHHHHHHCCCCCCHHHHHHHHHHCCCHHHHH
T ss_conf             578885267641215776654048-848975404--------666-6--7688862443003999864101124400259


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHH
Q ss_conf             89886521100000088777654200246752003656544323689999864599999999999999974-91899999
Q gi|254780636|r  104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL-GRSDLATS  182 (207)
Q Consensus       104 ~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~~~-~~~~~~~~  182 (207)
                      |+|++++++  .++++..+++++++..                   ..||+.||.++++||..|.++|.++ ++..+|..
T Consensus       374 miaayLl~p--~~~~~~~l~~~~~~e~-------------------~eYa~~Da~~t~~L~~~L~~~L~~e~~l~~l~~~  432 (832)
T 1bgx_T          374 MLLAYLLDP--SNTTPEGVARRYGGEW-------------------TEEAGERAALSERLFANLWGRLEGEERLLWLYRE  432 (832)
T ss_dssp             HHHHHHHCT--TCCSTTHHHHHHSCCC-------------------CSSHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHCC--CCCCHHHHHHHHCCCC-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999998647--7868067777625441-------------------5779999999999999999998877889999999


Q ss_pred             -HHHHHHHHHHHHHCCCCCCCC
Q ss_conf             -996400689998667988884
Q gi|254780636|r  183 -CCNFLMDRAELDLLGWENVDI  203 (207)
Q Consensus       183 -e~~~l~~~~~me~~g~~~~~~  203 (207)
                       |+++++++++||.+|++ +|.
T Consensus       433 IE~pl~~vLa~ME~~Gi~-vD~  453 (832)
T 1bgx_T          433 VERPLSAVLAHMEATGVR-LDV  453 (832)
T ss_dssp             THHHHHHHHHHHHHHCBC-BCT
T ss_pred             HHHHHHHHHHHHHHCCCC-CCH
T ss_conf             987887888999871554-329


No 11 
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.38  E-value=1.1e-12  Score=91.72  Aligned_cols=143  Identities=17%  Similarity=0.103  Sum_probs=91.6

Q ss_pred             CCCCCEEEECCCCCCCCCCCE-EEEEEEEECCCCEEE---ECCCC-CCCC---------------------CHHHHHHHH
Q ss_conf             489827997177789854450-799998418942899---74657-7857---------------------067767773
Q gi|254780636|r   18 RYVDAIAVDTETLGLMPRRDR-LCIVQLSPGDGTVDI---IRIAA-GQKN---------------------APNLVGMLV   71 (207)
Q Consensus        18 ~~~~~iaiDtEt~~l~~~~~~-l~LiQl~~~~~~~~l---~~~~~-~~~~---------------------~~~L~~ll~   71 (207)
                      ...++|++||||+|+++.++. ++.+.+...++...+   +.+.. ....                     .+.+.+++.
T Consensus         3 ~~~~~V~iD~ETtGl~~~~~~~i~~~aiv~~~g~~v~~~~v~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~~~   82 (189)
T 1wlj_A            3 GSREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLLK   82 (189)
T ss_dssp             ---CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEEECCCCCCCCCCEEEEEEEEEECCCEEEEEEECCCCCCCHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHC
T ss_conf             99989999768088899998679999999837959999986699989830024889997896227847888999987631


Q ss_pred             CCCCCEEECCCCHHHHHHHHHHHC-CC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHH
Q ss_conf             236402301000016888654200-00-0004578988652110000008877765420024675200365654432368
Q gi|254780636|r   72 DEKREKIFHYGRFDIAVLFYTFGV-RV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ  149 (207)
Q Consensus        72 d~~i~KV~Hn~~~D~~~L~~~~gi-~~-~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Q  149 (207)
                        +...|+||++||..+|...+.- .. .+..||+..++...+...++||..|++.++|..+....+             
T Consensus        83 --~~~lV~hn~~fD~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~i~~~~~-------------  147 (189)
T 1wlj_A           83 --GKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLL-------------  147 (189)
T ss_dssp             --TSEEEESSHHHHHHHTTCCCTTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTT-------------
T ss_pred             --CCEEEEECHHHHHHHHHHHCHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCC-------------
T ss_conf             --34589735687899999867032665841216999998736677889999999980987789998-------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99998645999999999999999749
Q gi|254780636|r  150 LQYAASDVVHLHALRLQFTEKLQRLG  175 (207)
Q Consensus       150 i~YAA~Dv~~l~~L~~~l~~~L~~~~  175 (207)
                      -.-|..||..+.+||..+.+.-.+.+
T Consensus       148 ~H~Al~DA~at~~l~~~~~~~~~~~~  173 (189)
T 1wlj_A          148 GHSSVEDARATMELYQISQRIRARRG  173 (189)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             88819999999999999999997469


No 12 
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=99.05  E-value=3.1e-10  Score=77.45  Aligned_cols=142  Identities=20%  Similarity=0.300  Sum_probs=87.5

Q ss_pred             HHHCCCCCCEEEECCCCCCCCCCCEEEEEEEEE---CCCC----E-EEECCCCCCCC----------------------C
Q ss_conf             784248982799717778985445079999841---8942----8-99746577857----------------------0
Q gi|254780636|r   14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGT----V-DIIRIAAGQKN----------------------A   63 (207)
Q Consensus        14 ~~~l~~~~~iaiDtEt~~l~~~~~~l~LiQl~~---~~~~----~-~l~~~~~~~~~----------------------~   63 (207)
                      +--+.....|.+|+||||++|.++++  ||++.   .++.    + .++........                      .
T Consensus         6 ~~~~~~~~yvviD~ETTGl~~~~~~I--ieig~v~~~~~~i~~~~~~~v~p~~~~~~~~~~i~gi~~~~~~~~~~~~~~~   83 (186)
T 2p1j_A            6 DSTFGDATFVVLDFETTGLDPQVDEI--IEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVL   83 (186)
T ss_dssp             -------CEEEEEEEESCSCTTTCCE--EEEEEEEEETTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHH
T ss_pred             CCCCCCCCEEEEEEECCCCCCCCCEE--EEEEEEEEECCEEEEEEEEEECCCCCCCHHHHHHCCCCHHHCCCCCHHHHHH
T ss_conf             98178884999998728999999868--9999999989968778899866887689899987098756500212199999


Q ss_pred             HHHHHHHHCCCCCEEECCCCHHHHHHHHHHH----CC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEC
Q ss_conf             6776777323640230100001688865420----00-000045789886521100000088777654200246752003
Q gi|254780636|r   64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFG----VR-VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS  138 (207)
Q Consensus        64 ~~L~~ll~d~~i~KV~Hn~~~D~~~L~~~~g----i~-~~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~S  138 (207)
                      +.+.+++.+  ..-|+||+.||..+|.+.+.    .. +.+++||+-.++.... ..+++|.+++++ +|+...+.    
T Consensus        84 ~~~~~~~~~--~~~v~hn~~fD~~~L~~~~~~~~~~~~~~~~id~~~~~~~~~~-~~~~~L~~l~~~-~gi~~~~~----  155 (186)
T 2p1j_A           84 PEFLGFLED--SIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLLK-LRSYSLDSVVEK-LGLGPFRH----  155 (186)
T ss_dssp             HHHHHHSSS--CEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHTC-CSCCSHHHHHHH-TTCCSTTC----
T ss_pred             HHHHHHCCC--CEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC-CCCCCHHHHHHH-CCCCCCCC----
T ss_conf             999974699--9899977898799999999984498766762020999998656-789889999998-69998989----


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             656544323689999864599999999999999974918
Q gi|254780636|r  139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS  177 (207)
Q Consensus       139 dW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~~~~~~  177 (207)
                                  .=|..||..+.++|.++.++++++|..
T Consensus       156 ------------H~Al~Da~~t~~l~~~l~~~~k~~G~~  182 (186)
T 2p1j_A          156 ------------HRALDDARVTAQVFLRFVEMMKKEGHH  182 (186)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHTTCC------
T ss_pred             ------------CCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             ------------788999999999999999999824997


No 13 
>2is3_A Ribonuclease T; RNAse, exoribonuclease, exonuclease, hydrolase, stable RNA maturation, tRNA END-turnover; 3.10A {Escherichia coli K12}
Probab=99.01  E-value=9.9e-10  Score=74.53  Aligned_cols=142  Identities=18%  Similarity=0.242  Sum_probs=85.1

Q ss_pred             CCCCCEEEECCCCCCCCCCCEEEEEEEEE------CCCC-----E---EEECCCCCCC---------------------C
Q ss_conf             48982799717778985445079999841------8942-----8---9974657785---------------------7
Q gi|254780636|r   18 RYVDAIAVDTETLGLMPRRDRLCIVQLSP------GDGT-----V---DIIRIAAGQK---------------------N   62 (207)
Q Consensus        18 ~~~~~iaiDtEt~~l~~~~~~l~LiQl~~------~~~~-----~---~l~~~~~~~~---------------------~   62 (207)
                      ++..+|.||+||||++|.++++  ||+|.      +++.     .   ++.+......                     .
T Consensus        15 ~~~~~Vv~D~ETTGl~p~~d~I--IeIgav~i~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~i~gi~~~~~~~~~~~~   92 (215)
T 2is3_A           15 RGFYPVVIDVETAGFNAKTDAL--LEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSE   92 (215)
T ss_dssp             TTEEEEEEEEEESSSCTTTSCE--EEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCCCCHHHHHHHCCCTTCSTTCCBCH
T ss_pred             CCCCEEEEEEECCCCCCCCCCC--EEEEEEEEEECCCCCEECCCEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCH
T ss_conf             2898599983799999999832--89999998956888683353599985268899988568760252138787079861


Q ss_pred             CHHHHHHHHC----------CCCCEEECCCCHHHHHHHHHHH---CC-----CCCHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             0677677732----------3640230100001688865420---00-----0000457898865211000000887776
Q gi|254780636|r   63 APNLVGMLVD----------EKREKIFHYGRFDIAVLFYTFG---VR-----VRPVFCTKIASRLTRTYTNQHGLKDNLK  124 (207)
Q Consensus        63 ~~~L~~ll~d----------~~i~KV~Hn~~~D~~~L~~~~g---i~-----~~~i~DT~ias~l~~~~~~~~~L~~L~~  124 (207)
                      .+.+.++++-          .....|+||++||..+|.+.+.   +.     +...+||+..++..   .++++|..++.
T Consensus        93 ~~~~~~~~~~i~~~~~~~~~~~~~lVaHNa~FD~~fL~~~~~r~~l~~~~~~~~~~iDt~~~~~~~---~~~~~L~~l~~  169 (215)
T 2is3_A           93 YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLA---LGQTVLSKACQ  169 (215)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSEEEEEETTHHHHHHHHHHHHHHHTCTTCCEEEEEEEEHHHHHHHH---HSCCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH---HCCCCHHHHHH
T ss_conf             253599999999998763146550100376876999999999839998865330167799999887---36324999999


Q ss_pred             HHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf             5420024675200365654432368999986459999999999999997491899
Q gi|254780636|r  125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL  179 (207)
Q Consensus       125 ~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~~~~~~~~  179 (207)
                      + +|++++              ..+-+=|..||..+.+||.++.+++++.+.+.+
T Consensus       170 ~-~~i~~~--------------~~~~H~Al~Da~~ta~lf~~l~~~~~~~g~~~~  209 (215)
T 2is3_A          170 T-AGMDFD--------------STQAHSALYDTERTAVLFCEIVNRWKRLGGWPL  209 (215)
T ss_dssp             H-TTCCCC--------------TTTTTCHHHHHHHHHHHHHHHHHHHHHTTCSCC
T ss_pred             H-CCCCCC--------------CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             8-599999--------------997678699999999999999999997589999


No 14 
>2ioc_B Three prime repair exonuclease 1; proline helix, nucleotide complex, DNAQ family, hydrolase; HET: D5M; 2.10A {Mus musculus} SCOP: c.55.3.5 PDB: 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=98.73  E-value=4.4e-08  Score=64.96  Aligned_cols=134  Identities=18%  Similarity=0.101  Sum_probs=79.4

Q ss_pred             CCCEEEECCCCCCCCCCCEEEEEEEEEC----C-----------------------CCEEEECCCCC-------------
Q ss_conf             9827997177789854450799998418----9-----------------------42899746577-------------
Q gi|254780636|r   20 VDAIAVDTETLGLMPRRDRLCIVQLSPG----D-----------------------GTVDIIRIAAG-------------   59 (207)
Q Consensus        20 ~~~iaiDtEt~~l~~~~~~l~LiQl~~~----~-----------------------~~~~l~~~~~~-------------   59 (207)
                      ...|.+||||||+++.++++  ||++.-    +                       .-..++.....             
T Consensus        12 ~t~v~~D~ETTGl~~~~~~I--ieia~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~lv~P~~~I~~~a~~ihGIt~   89 (242)
T 2ioc_B           12 QTLIFLDLEATGLPSSRPEV--TELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSK   89 (242)
T ss_dssp             SEEEEEEEEESSCGGGCCCE--EEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSSCEEEEEECCCSSCCCHHHHHHHCCCH
T ss_pred             CEEEEEEEECCCCCCCCCCE--EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHEECCCCCCCHHHHHHCCCCH
T ss_conf             85999998889969999876--8999999876753465222111113566541101233012889979988998629999


Q ss_pred             ------C--C----CCHHHHHHHHC--CCCCEEECCC-CHHHHHHHHHH---HCCC--CC--HHHHHHHHHHHHH-----
Q ss_conf             ------8--5----70677677732--3640230100-00168886542---0000--00--0457898865211-----
Q gi|254780636|r   60 ------Q--K----NAPNLVGMLVD--EKREKIFHYG-RFDIAVLFYTF---GVRV--RP--VFCTKIASRLTRT-----  112 (207)
Q Consensus        60 ------~--~----~~~~L~~ll~d--~~i~KV~Hn~-~~D~~~L~~~~---gi~~--~~--i~DT~ias~l~~~-----  112 (207)
                            .  .    ..+.++.+++.  ....-|+||+ .||..+|.+.+   |+..  .+  ..||+-+++-+..     
T Consensus        90 ~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~lVahN~~~FD~~~L~~~~~r~~~~~~~~~~~~iDtl~~~~~~~~~~~~~  169 (242)
T 2ioc_B           90 AELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPS  169 (242)
T ss_dssp             HHHHHTTCCCSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHTC---
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHCCCCC
T ss_conf             99972015505689999899999741688559983547889999999999859988877886877899999970324222


Q ss_pred             ---HCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---00000088777654200246752003656544323689999864599999999999999
Q gi|254780636|r  113 ---YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL  171 (207)
Q Consensus       113 ---~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L  171 (207)
                         ...+++|.+|+++++|.....                -+=|..||..+.+++.++.+.+
T Consensus       170 ~~~~~~~~~L~~l~~~~~g~~~~~----------------aH~Al~Da~~t~~l~~~~~~~~  215 (242)
T 2ioc_B          170 GNGSRKSYSLGSIYTRLYWQAPTD----------------SHTAEGDVLTLLSICQWKPQAL  215 (242)
T ss_dssp             ----CCCCCHHHHHHHHHSSCCSS----------------TTSHHHHHHHHHHHHTSSHHHH
T ss_pred             CCCCCCCCCHHHHHHHHCCCCCCC----------------CCCHHHHHHHHHHHHHHHHHHH
T ss_conf             467766856899999974999987----------------8388999999999999999999


No 15 
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=98.58  E-value=2.5e-07  Score=60.56  Aligned_cols=82  Identities=20%  Similarity=0.158  Sum_probs=55.0

Q ss_pred             CCCEEECCC-CHHHHHHHHHH---HCCC--C-CHHHHHHHHHHHHH---------HCCCHHHHHHHHHHHCCCCCCCCEE
Q ss_conf             640230100-00168886542---0000--0-00457898865211---------0000008877765420024675200
Q gi|254780636|r   74 KREKIFHYG-RFDIAVLFYTF---GVRV--R-PVFCTKIASRLTRT---------YTNQHGLKDNLKELLGINISKAQQS  137 (207)
Q Consensus        74 ~i~KV~Hn~-~~D~~~L~~~~---gi~~--~-~i~DT~ias~l~~~---------~~~~~~L~~L~~~~lg~~ldK~~q~  137 (207)
                      ....|+||+ +||..+|.+.+   |+.+  . ...||+-.++.+..         ...+++|.+|++++.|..       
T Consensus       113 ~~~~v~hn~~~FD~~~L~~~~~r~~~~~~~~~~~iDtl~~~~~l~~~~~~~~~~~~~~~~~L~~l~~~~~~~~-------  185 (238)
T 1y97_A          113 PICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRYFRAE-------  185 (238)
T ss_dssp             SEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC----------CCSHHHHHHHHHSSC-------
T ss_pred             CCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCC-------
T ss_conf             8269996518778999999999808988889878778999999735075444566668858999999964999-------


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3656544323689999864599999999999999
Q gi|254780636|r  138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL  171 (207)
Q Consensus       138 SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L  171 (207)
                               ..+-+-|..||..+.+|+.++...+
T Consensus       186 ---------~~~aH~Al~Da~~t~~i~~~l~~~~  210 (238)
T 1y97_A          186 ---------PSAAHSAEGDVHTLLLIFLHRAAEL  210 (238)
T ss_dssp             ---------CC---CHHHHHHHHHHHHHHTHHHH
T ss_pred             ---------CCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             ---------8978898999999999999999999


No 16 
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PSI, MCSG, protein structure initiative; 2.09A {Pseudomonas aeruginosa PAO1} SCOP: c.55.3.5
Probab=98.58  E-value=3.9e-07  Score=59.44  Aligned_cols=86  Identities=16%  Similarity=0.181  Sum_probs=53.5

Q ss_pred             CEEECCCCHHHHHHHHHH---HCCC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHH
Q ss_conf             023010000168886542---0000--00045789886521100000088777654200246752003656544323689
Q gi|254780636|r   76 EKIFHYGRFDIAVLFYTF---GVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL  150 (207)
Q Consensus        76 ~KV~Hn~~~D~~~L~~~~---gi~~--~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi  150 (207)
                      .-|+||..||..++...+   |+..  .+.+|+....+......+..+|.++++. +|++++..         +     .
T Consensus       128 ~~v~~n~~fd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-~gi~~~~~---------~-----a  192 (224)
T 2f96_A          128 ILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYGQTVLAKACQA-AGMEFDNR---------E-----A  192 (224)
T ss_dssp             EEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHSCCSHHHHHHH-TTCCCCTT---------S-----C
T ss_pred             EECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH-CCCCCCCC---------C-----C
T ss_conf             2215347889999999999819998864113589999998754796439999998-29999989---------7-----6


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99986459999999999999997491
Q gi|254780636|r  151 QYAASDVVHLHALRLQFTEKLQRLGR  176 (207)
Q Consensus       151 ~YAA~Dv~~l~~L~~~l~~~L~~~~~  176 (207)
                      +=|..||..+.+||.+|.+++++.+.
T Consensus       193 H~Al~Da~~ta~l~~kl~~~~~~~~~  218 (224)
T 2f96_A          193 HSARYDTEKTAELFCGIVNRWKEMGG  218 (224)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             78899999999999999999998189


No 17 
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, product bound structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli K12} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=98.39  E-value=3.6e-06  Score=53.86  Aligned_cols=134  Identities=19%  Similarity=0.070  Sum_probs=75.6

Q ss_pred             CCCCCEEEECCCCCCCCCCCEEEEEEEEE----CCC----C--EEEECCCCCCCCC------------------------
Q ss_conf             48982799717778985445079999841----894----2--8997465778570------------------------
Q gi|254780636|r   18 RYVDAIAVDTETLGLMPRRDRLCIVQLSP----GDG----T--VDIIRIAAGQKNA------------------------   63 (207)
Q Consensus        18 ~~~~~iaiDtEt~~l~~~~~~l~LiQl~~----~~~----~--~~l~~~~~~~~~~------------------------   63 (207)
                      .....|.+|+||||++|.++++  ||+|.    .+.    .  .+...+.......                        
T Consensus         7 ~~~~~v~~D~ETTGl~~~~d~i--iq~~ai~~d~~~~~~~~~~~~~~~~~~~~~p~~~a~~v~gi~~~~~~~~~~~~~e~   84 (482)
T 2qxf_A            7 QQSTFLFHDYETFGTHPALDRP--AQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAF   84 (482)
T ss_dssp             CCCEEEEEEEEESSSCTTTSCE--EEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHH
T ss_pred             CCCCEEEEEEECCCCCCCCCCE--EEEEEEEECCCCCEEEEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHCCCCCHHHH
T ss_conf             6897899998878979999822--89999999899858514567763479999988789688494999997399999999


Q ss_pred             -HHHHHHHHCCCCCEEECC-CCHHHHHHHHHHH---CCC--------CCHHHHHHHHHHHHH-------------HCCCH
Q ss_conf             -677677732364023010-0001688865420---000--------000457898865211-------------00000
Q gi|254780636|r   64 -PNLVGMLVDEKREKIFHY-GRFDIAVLFYTFG---VRV--------RPVFCTKIASRLTRT-------------YTNQH  117 (207)
Q Consensus        64 -~~L~~ll~d~~i~KV~Hn-~~~D~~~L~~~~g---i~~--------~~i~DT~ias~l~~~-------------~~~~~  117 (207)
                       ..+.++++.+...-|||| +.||..+|...+-   ..|        ....||......+..             ...++
T Consensus        85 ~~~i~~~~~~~~~~~vg~N~~~FD~~~l~~~~~r~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (482)
T 2qxf_A           85 AARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSF  164 (482)
T ss_dssp             HHHHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCC
T ss_pred             HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             99999998448976999676334799999998874478501220268750256888888864044221243234686646


Q ss_pred             HHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             08877765420024675200365654432368999986459999999999999
Q gi|254780636|r  118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK  170 (207)
Q Consensus       118 ~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~  170 (207)
                      .|..++.. .|+.                ...-+=|..||.+|.+|...+.+.
T Consensus       165 kL~~l~~~-~~i~----------------~~~aHdA~~D~~~t~~l~~~l~~~  200 (482)
T 2qxf_A          165 RLEHLTKA-NGIE----------------HSNAHDAMADVYATIAMAKLVKTR  200 (482)
T ss_dssp             CHHHHHHH-TTCC----------------CC---CTTHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHH-CCCC----------------CCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             69999998-1998----------------778866355179999999999874


No 18 
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=98.19  E-value=2.3e-06  Score=54.93  Aligned_cols=99  Identities=16%  Similarity=0.132  Sum_probs=68.4

Q ss_pred             CCCCEEECCCCHHHHHHHHHHHCCCCC--HHHHHHHHHHHHH--------------------------------------
Q ss_conf             364023010000168886542000000--0457898865211--------------------------------------
Q gi|254780636|r   73 EKREKIFHYGRFDIAVLFYTFGVRVRP--VFCTKIASRLTRT--------------------------------------  112 (207)
Q Consensus        73 ~~i~KV~Hn~~~D~~~L~~~~gi~~~~--i~DT~ias~l~~~--------------------------------------  112 (207)
                      +++ -||||..||-......+.+...+  ++|||=++--..|                                      
T Consensus       194 ~rl-VVGHNVsyDRaRi~EeY~l~~s~~rFlDTMSLHvavsGm~S~QR~~w~~~kk~~~~~~~~~~~~~~~~~~~~~~~~  272 (1172)
T 3ikm_A          194 EQL-VVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPA  272 (1172)
T ss_dssp             CCC-CBCBCSSSSTTGGGTSSCSSCCCCCCCBTTHHHHHHSCCCHHHHHHHHHHHHC-----------------------
T ss_pred             CCE-EEECCCCCCHHHHHHHHHHCCCCCEEEEHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             637-9856755108888888731456763221034655402566242689987423132200123333321333212652


Q ss_pred             --------HCC--CHHHHHHHHHHH-CCCCCCCCEECCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             --------000--000887776542-002467520036565443------2368999986459999999999999997
Q gi|254780636|r  113 --------YTN--QHGLKDNLKELL-GINISKAQQSSDWSADDL------SDEQLQYAASDVVHLHALRLQFTEKLQR  173 (207)
Q Consensus       113 --------~~~--~~~L~~L~~~~l-g~~ldK~~q~SdW~~rpL------s~~Qi~YAA~Dv~~l~~L~~~l~~~L~~  173 (207)
                              .+.  ..||.++.+-+| |+.+||+.|- .+..-++      -++-+.|||.||.++.++|.++-+...+
T Consensus       273 ~~~~~W~~~sS~~~NSL~dV~~lhcg~~~ldK~~Rd-~Fv~~~~~dI~~~fq~Lm~YCA~DV~aT~~V~~kl~P~Fle  349 (1172)
T 3ikm_A          273 ISSWDWLDISSVNSNSLAEVHRLYVGGPPLEKEPRE-LFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLE  349 (1172)
T ss_dssp             ---CCCCCCCCTTSHHHHHHHTCSSCSCS--SCSSS-STTTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf             234330002344536499999974799877877888-88529999999989999999998899999999987768785


No 19 
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A*
Probab=97.89  E-value=3.5e-05  Score=48.14  Aligned_cols=133  Identities=20%  Similarity=0.208  Sum_probs=75.1

Q ss_pred             CCCCCEEEECCCCCCCCCCCE---EEEEEEEEC---C-----CCE-EEECCCCCC-CC---------------------C
Q ss_conf             489827997177789854450---799998418---9-----428-997465778-57---------------------0
Q gi|254780636|r   18 RYVDAIAVDTETLGLMPRRDR---LCIVQLSPG---D-----GTV-DIIRIAAGQ-KN---------------------A   63 (207)
Q Consensus        18 ~~~~~iaiDtEt~~l~~~~~~---l~LiQl~~~---~-----~~~-~l~~~~~~~-~~---------------------~   63 (207)
                      +....|.|||||||+++....   =.+||++.-   +     ..+ .++...... ..                     .
T Consensus         7 ~~~r~vv~D~ETTGl~~~~~~~~~drIieigav~~~~~~~~~~~~~~~v~P~~~~~~~~~~i~gi~~e~~~~~~~~~~v~   86 (194)
T 2gui_A            7 AITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAEVA   86 (194)
T ss_dssp             -CCEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEECSCCEEEECCCSSCCCHHHHHHHCCCHHHHTTSCCHHHHH
T ss_pred             CCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEECCEEECEEEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             88837999973799987645678954999999999999997407899989998655778987075576643345589988


Q ss_pred             HHHHHHHHCCCCCEEECCCCHHHHHHHHHHH---CC--CC----CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             6776777323640230100001688865420---00--00----004578988652110000008877765420024675
Q gi|254780636|r   64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFG---VR--VR----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA  134 (207)
Q Consensus        64 ~~L~~ll~d~~i~KV~Hn~~~D~~~L~~~~g---i~--~~----~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~  134 (207)
                      ..+.+++.+.  ..|+||..+|..++...+.   ..  ..    .+.||...++-... ..+++|..+++. +|+..++ 
T Consensus        87 ~~~~~~l~~~--~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~p-~~~~~L~~l~~~-~~i~~~~-  161 (194)
T 2gui_A           87 DEFMDYIRGA--ELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFP-GKRNSLDALCAR-YEIDNSK-  161 (194)
T ss_dssp             HHHHHHHTTS--EEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHST-TSCCSHHHHHHH-TTCCCTT-
T ss_pred             HHHHHHHCCC--EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHCC-CCCCCHHHHHHH-CCCCCCC-
T ss_conf             9999870897--3899785131999999999809997655544200019999999748-987889999998-5999899-


Q ss_pred             CEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2003656544323689999864599999999999
Q gi|254780636|r  135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT  168 (207)
Q Consensus       135 ~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~  168 (207)
                                   .+.+=|..||..+.+||.+|.
T Consensus       162 -------------~~~H~Al~Da~~t~~l~~~m~  182 (194)
T 2gui_A          162 -------------RTLHGALLDAQILAEVYLAMT  182 (194)
T ss_dssp             -------------CSSCCHHHHHHHHHHHHHHHT
T ss_pred             -------------CCCCCHHHHHHHHHHHHHHHH
T ss_conf             -------------987488999999999999997


No 20 
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=97.58  E-value=0.00033  Score=42.41  Aligned_cols=141  Identities=17%  Similarity=0.174  Sum_probs=84.9

Q ss_pred             HCCCCCCEEEECCCCCCCCCC-------------------CEEEEEEEE----ECCC------CEEEECC--C--CCCCC
Q ss_conf             424898279971777898544-------------------507999984----1894------2899746--5--77857
Q gi|254780636|r   16 AARYVDAIAVDTETLGLMPRR-------------------DRLCIVQLS----PGDG------TVDIIRI--A--AGQKN   62 (207)
Q Consensus        16 ~l~~~~~iaiDtEt~~l~~~~-------------------~~l~LiQl~----~~~~------~~~l~~~--~--~~~~~   62 (207)
                      ..+..+.||+|||++|+....                   +.+.+||++    ..++      .++-+.+  .  .....
T Consensus        20 ~i~~~~fvAiDtEfpGl~~~~~~~~~~~~~~~Y~~lr~nv~~~~iiQlGlt~~~~~g~~~~~~~~w~FNf~f~~~~d~~~   99 (252)
T 2d5r_A           20 VIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYA   99 (252)
T ss_dssp             HHHHCCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTSCCC
T ss_pred             HHHCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCC
T ss_conf             98649989998670684578876557998999999998775403037898986247877888612779987779766537


Q ss_pred             CH-----------------------HHHHH------HHCCCCCEEECCCCHHHHHHHHHH-H-CCC--------------
Q ss_conf             06-----------------------77677------732364023010000168886542-0-000--------------
Q gi|254780636|r   63 AP-----------------------NLVGM------LVDEKREKIFHYGRFDIAVLFYTF-G-VRV--------------   97 (207)
Q Consensus        63 ~~-----------------------~L~~l------l~d~~i~KV~Hn~~~D~~~L~~~~-g-i~~--------------   97 (207)
                      +.                       .+.++      .-++++.||.|++-+|+..|.+.+ | -.|              
T Consensus       100 ~~Si~fL~~~GfDF~k~~~~GI~~~~f~ell~~s~~~~~~~v~wv~f~g~yD~~~L~k~l~g~~LP~~~~~F~~~~~~~F  179 (252)
T 2d5r_A          100 QDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF  179 (252)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
T ss_conf             78999999869977899980973899999888611432589737871345789999999809999977899999999977


Q ss_pred             CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             00045789886521100000088777654200246752003656544323689999864599999999999999974
Q gi|254780636|r   98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL  174 (207)
Q Consensus        98 ~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~~~  174 (207)
                      ..++||...++-+.+  .+-||..+++. ||+.   ..         -+.   +=|..|+..+..+|-++.+.+-..
T Consensus       180 p~~yD~K~i~~~~~~--~~~~L~~la~~-L~v~---r~---------g~~---H~AG~DSllT~~~F~~l~~~~~~~  238 (252)
T 2d5r_A          180 PVIYDVKYLMKSCKN--LKGGLQEVAEQ-LELE---RI---------GPQ---HQAGSDSLLTGMAFFKMREMFFED  238 (252)
T ss_dssp             SCEEEHHHHGGGCTT--CCSSHHHHHHH-HTCC---CC---------SST---TSHHHHHHHHHHHHHHHHHHTSCS
T ss_pred             CHHEEHHHHHHHCCC--CCCHHHHHHHH-CCCC---CC---------CCC---CCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             346046989844566--57649999997-6999---87---------987---653678999999999999997147


No 21 
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=97.57  E-value=0.00034  Score=42.38  Aligned_cols=133  Identities=14%  Similarity=0.123  Sum_probs=72.4

Q ss_pred             CEEEECCCCCCCCCCCEEEEEEEEE-----CCCC----E-EEECCCCCCCCCH------------------------HHH
Q ss_conf             2799717778985445079999841-----8942----8-9974657785706------------------------776
Q gi|254780636|r   22 AIAVDTETLGLMPRRDRLCIVQLSP-----GDGT----V-DIIRIAAGQKNAP------------------------NLV   67 (207)
Q Consensus        22 ~iaiDtEt~~l~~~~~~l~LiQl~~-----~~~~----~-~l~~~~~~~~~~~------------------------~L~   67 (207)
                      .|.+|+||||.++....-..|||+.     .++.    + .++.+.......+                        .+.
T Consensus        33 ~vv~D~EtTg~~~~~~~~eIIEiGaV~~d~~~~~i~~~f~~~vkP~~~~~i~~~~~~itgIt~e~l~~a~~~~ev~~~f~  112 (224)
T 2xri_A           33 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVD  112 (224)
T ss_dssp             EEEECCEECCCC-CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCCCHHHHHHHHH
T ss_pred             EEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCHHHHEECCCCHHHCCCCCCHHHHHHHHH
T ss_conf             99999836899998897818999999998999869889999999798887896781530113565113463777899999


Q ss_pred             HHHHCCCC------CEEECCCCHHHHHH-HH---HHHCCC----CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
Q ss_conf             77732364------02301000016888-65---420000----000457898865211000000887776542002467
Q gi|254780636|r   68 GMLVDEKR------EKIFHYGRFDIAVL-FY---TFGVRV----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK  133 (207)
Q Consensus        68 ~ll~d~~i------~KV~Hn~~~D~~~L-~~---~~gi~~----~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK  133 (207)
                      .++++..+      .-+.++++||...+ ..   ..|+..    ....||+-..+...+...+++|..+++ ++|++...
T Consensus       113 ~~l~~~~lv~~~~~~~~~~~~~fD~~~~l~~~~~~~~~~~p~~~~~~iD~~~~~~~~~~~~~~~~L~~l~~-~~gi~~~~  191 (224)
T 2xri_A          113 EWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK-GLSLQHIG  191 (224)
T ss_dssp             HHHHHTTTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCCTTTHHHHHH-HTTCCCCS
T ss_pred             HHHCCCEEEEECCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCHHHHHH-HCCCCCCC
T ss_conf             99658859940552799965166657899999997499987434312349999999718777876999999-86999999


Q ss_pred             CCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5200365654432368999986459999999999999
Q gi|254780636|r  134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK  170 (207)
Q Consensus       134 ~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~  170 (207)
                                     +-+-|..||..+.+|+.+|.++
T Consensus       192 ---------------~~H~Al~DA~~ta~l~~~Ll~~  213 (224)
T 2xri_A          192 ---------------RPHSGIDDCKNIANIMKTLAYR  213 (224)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ---------------CCCCHHHHHHHHHHHHHHHHHC
T ss_conf             ---------------8738599999999999999977


No 22 
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymerase, POL alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 3a2f_A* 2jgu_A* 1d5a_A
Probab=97.56  E-value=0.0023  Score=37.56  Aligned_cols=165  Identities=18%  Similarity=0.189  Sum_probs=91.9

Q ss_pred             EEECCCCCCHHH----HC--------CCCCCEEEECCCCCCC---CCCCEEEEEEEEECCCCEEEECCCCCC--------
Q ss_conf             153257888578----42--------4898279971777898---544507999984189428997465778--------
Q gi|254780636|r    4 IRVHEGDIPAEC----AA--------RYVDAIAVDTETLGLM---PRRDRLCIVQLSPGDGTVDIIRIAAGQ--------   60 (207)
Q Consensus         4 ~~~~~~dl~~~~----~l--------~~~~~iaiDtEt~~l~---~~~~~l~LiQl~~~~~~~~l~~~~~~~--------   60 (207)
                      +.+++.|+|-..    +.        ..-.++++|.||.+..   +..+++..|.++...... ++......        
T Consensus       107 ~~~~E~dI~~~~r~lid~~l~p~~~~~~l~i~s~DIE~~~~~~~~~~~d~I~~Is~~~~~~~~-vi~~~~~d~~~v~~~~  185 (775)
T 1qht_A          107 VDIYEYDIPFAKRYLIDKGLIPMEGDEELTMLAFAIATLYHEGEEFGTGPILMISYADGSEAR-VITWKKIDLPYVDVVS  185 (775)
T ss_dssp             EEEESCSSCHHHHHHHHTTCCTTCSCCCCCEEEEEEEECCCTTCCTTCSCEEEEEEECSSCEE-EEESSCCCCSSEEECS
T ss_pred             CCEECCCCCCHHEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCE-EEECCCCCCCEEEECC
T ss_conf             635715888054277877878567899836999998757876888777988999996389707-9967787876278719


Q ss_pred             ---CCCHHHHHHH--HCCCCCEEECCC-CHHHHHHHHH---HHCC----------------------CCC--HHHHHHHH
Q ss_conf             ---5706776777--323640230100-0016888654---2000----------------------000--04578988
Q gi|254780636|r   61 ---KNAPNLVGML--VDEKREKIFHYG-RFDIAVLFYT---FGVR----------------------VRP--VFCTKIAS  107 (207)
Q Consensus        61 ---~~~~~L~~ll--~d~~i~KV~Hn~-~~D~~~L~~~---~gi~----------------------~~~--i~DT~ias  107 (207)
                         .....+..++  .||+|+ +|||. .||+..|...   +|+.                      ..+  ++|+.-..
T Consensus       186 ~E~~LL~~F~~~i~~~dPDII-~GyN~~~FDlpyL~~R~~~l~i~~~~~r~~~~~~~~~~~~~~~~~i~Gri~iDl~~~~  264 (775)
T 1qht_A          186 TEKEMIKRFLRVVREKDPDVL-ITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVI  264 (775)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEE-EESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCEE-EECCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCEEECCCEEEEEECCEEEEEHHHHH
T ss_conf             999999999999987199889-8708877529999999998298101035688765434486689988798999839999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHCCCCCCC--CE-ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             652110000008877765420024675--20-03656544323689999864599999999999999
Q gi|254780636|r  108 RLTRTYTNQHGLKDNLKELLGINISKA--QQ-SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL  171 (207)
Q Consensus       108 ~l~~~~~~~~~L~~L~~~~lg~~ldK~--~q-~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L  171 (207)
                      +-. ....+++|.+++++++|.....-  .. .--|...+-...-+.|+..||..+..|..++....
T Consensus       265 ~~~-~~l~sy~L~~Va~~~lg~~K~d~~~~~i~~~~~~~~~~~~~~~Y~~~D~~lv~~L~~kl~~~~  330 (775)
T 1qht_A          265 RRT-INLPTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFFPME  330 (775)
T ss_dssp             HHH-SCCSCCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-CCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             764-667666689999998499755569999999875263299999996999999999988787999


No 23 
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=97.50  E-value=0.0014  Score=38.81  Aligned_cols=140  Identities=14%  Similarity=0.197  Sum_probs=80.8

Q ss_pred             HCCCCCCEEEECCCCCCCCCC-------------------CEEEEEEEE----ECC-------CCEEEECCC--CCC--C
Q ss_conf             424898279971777898544-------------------507999984----189-------428997465--778--5
Q gi|254780636|r   16 AARYVDAIAVDTETLGLMPRR-------------------DRLCIVQLS----PGD-------GTVDIIRIA--AGQ--K   61 (207)
Q Consensus        16 ~l~~~~~iaiDtEt~~l~~~~-------------------~~l~LiQl~----~~~-------~~~~l~~~~--~~~--~   61 (207)
                      .+...+.||+|||++|+....                   +.+.+||++    ..+       ..++.+.+.  ...  .
T Consensus        34 ~i~~~~fVAiD~Ef~Gi~~~~~~~~~~t~~~rY~~lk~nv~~~~iiQlGlt~f~~~g~~~~~~~~~w~FNf~~~~~~~~~  113 (289)
T 1uoc_A           34 LVSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPSTWQFNFEFDPKKEIM  113 (289)
T ss_dssp             HTTTSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCCCSSSCSEEEEEBCCCTTCCCC
T ss_pred             HHHCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCC
T ss_conf             98339989996251784578886668999999999998664363246999987048876888714789977448620232


Q ss_pred             CCH-----------------------HHHH------HHHCCCCCEEECCCCHHHHHHHHHH-HC-CC-------------
Q ss_conf             706-----------------------7767------7732364023010000168886542-00-00-------------
Q gi|254780636|r   62 NAP-----------------------NLVG------MLVDEKREKIFHYGRFDIAVLFYTF-GV-RV-------------   97 (207)
Q Consensus        62 ~~~-----------------------~L~~------ll~d~~i~KV~Hn~~~D~~~L~~~~-gi-~~-------------   97 (207)
                      .+.                       ...+      ++.++++.||+||+-+|+..|.+.+ |- .|             
T Consensus       114 ~~~Si~fL~~~G~DFnk~~~~GI~~~~f~~~~~~s~l~~~~~~~wv~f~g~yD~~yl~k~l~~~~LP~~~~~F~~~~~~~  193 (289)
T 1uoc_A          114 STESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQY  193 (289)
T ss_dssp             CHHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESSTTHHHHHHHHHHTTSCCCSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHCCHHHCCCCEEEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             57789999985998689997199888888998750044247862896043557999999971898999999999999998


Q ss_pred             -CCHHHHHHHHHHHHHHCC-------------CHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             -000457898865211000-------------000887776542002467520036565443236899998645999999
Q gi|254780636|r   98 -RPVFCTKIASRLTRTYTN-------------QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL  163 (207)
Q Consensus        98 -~~i~DT~ias~l~~~~~~-------------~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L  163 (207)
                       ..++||...++.+.+...             +.||..+++. +|++             +.  ..-+=|+.|+..+-.+
T Consensus       194 Fp~iyDtK~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~va~~-l~v~-------------r~--g~~HeAG~DS~lTg~~  257 (289)
T 1uoc_A          194 MPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADE-LGLP-------------RF--SIFTTTGGQSLLMLLS  257 (289)
T ss_dssp             CSSEEEHHHHHHHHTTTCC-------------CCSHHHHHHH-TTCC-------------CC--GGGGSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH-CCCC-------------CC--CCCCCCHHHHHHHHHH
T ss_conf             762613999998621335754343322101234888899987-2998-------------77--8886607899999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q gi|254780636|r  164 RLQFTEKL  171 (207)
Q Consensus       164 ~~~l~~~L  171 (207)
                      +-++.+.+
T Consensus       258 F~~l~~~~  265 (289)
T 1uoc_A          258 FCQLSKLS  265 (289)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
T ss_conf             99999987


No 24 
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=97.45  E-value=0.0011  Score=39.34  Aligned_cols=145  Identities=17%  Similarity=0.203  Sum_probs=76.7

Q ss_pred             CCCCEEEECCCCCC------CCCCCEEEEEEEEEC--CC--CEEEECCC------------------CCCCCCHHHHHHH
Q ss_conf             89827997177789------854450799998418--94--28997465------------------7785706776777
Q gi|254780636|r   19 YVDAIAVDTETLGL------MPRRDRLCIVQLSPG--DG--TVDIIRIA------------------AGQKNAPNLVGML   70 (207)
Q Consensus        19 ~~~~iaiDtEt~~l------~~~~~~l~LiQl~~~--~~--~~~l~~~~------------------~~~~~~~~L~~ll   70 (207)
                      .-.+++||.|+.+-      +|.+++..+||++..  ++  .+++....                  ........+..++
T Consensus       189 ~lrilsfDIE~~s~~~~~fPdp~~~~~~ii~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~sEkeLL~~F~~~i  268 (847)
T 1s5j_A          189 KIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKVLVLNRNDVNEGSVKLDGISVERFNTEYELLGRFFDIL  268 (847)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEEEEEECSSCCCCCCEEETTEEEEEESSHHHHHHHHHHHH
T ss_pred             CCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHC
T ss_conf             84499999887888889998943477428999999568998999981677776654579958999898999999999742


Q ss_pred             HCCCCCEEECCC-CHHHHHHHHH---HHCCCCC----------------H-HHH-HHH----HHHHH--HHCCCHHHHHH
Q ss_conf             323640230100-0016888654---2000000----------------0-457-898----86521--10000008877
Q gi|254780636|r   71 VDEKREKIFHYG-RFDIAVLFYT---FGVRVRP----------------V-FCT-KIA----SRLTR--TYTNQHGLKDN  122 (207)
Q Consensus        71 ~d~~i~KV~Hn~-~~D~~~L~~~---~gi~~~~----------------i-~DT-~ia----s~l~~--~~~~~~~L~~L  122 (207)
                      .||+|+ +|||+ .||+..|.+.   +|+....                + +|. ...    .+...  ....+++|.++
T Consensus       269 ~dpDII-~GyNi~~FDlpYL~~Ra~~lg~~~~~~~~~~~g~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~~l~sy~L~~V  347 (847)
T 1s5j_A          269 LEYPIV-LTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGKYNEYNLDAV  347 (847)
T ss_dssp             TTCSEE-EESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTTCCSSCSHHHH
T ss_pred             CCCCEE-EEEECCCCCHHHHHHHHHHCCCCCCCCEEECCCCEEEEEEEEEEEEEEEEEHHHHHHHHHHHCCCCCCCHHHH
T ss_conf             289979-8831056658999999998099832042530573235786206886533575989999876413020779999


Q ss_pred             HHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             765420024675200365654432368999986459999999999
Q gi|254780636|r  123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF  167 (207)
Q Consensus       123 ~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l  167 (207)
                      ++++||..-  ..-...+.... .+.-+.|+..||..+..|...+
T Consensus       348 a~~~Lg~~K--~~~~~~~~~~d-~~~l~~Y~~~D~~l~~~L~~~~  389 (847)
T 1s5j_A          348 AKALLGTSK--VKVDTLISFLD-VEKLIEYNFRDAEITLQLTTFN  389 (847)
T ss_dssp             HHHHHCCCC--C--SSCTTTCC-HHHHHHHHHHHHHHHHHTTTHH
T ss_pred             HHHHHCCCC--CCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999838884--22222020100-6889888755568888999875


No 25 
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=97.34  E-value=0.0035  Score=36.51  Aligned_cols=142  Identities=11%  Similarity=0.049  Sum_probs=74.6

Q ss_pred             CCCEEEECCCCCCCCCCCEEEEEEEEECCCC-EEEECCCCCCCCCHHHHHHHH--CCCCCEEECCCCHHHHHHHHHHHC-
Q ss_conf             9827997177789854450799998418942-899746577857067767773--236402301000016888654200-
Q gi|254780636|r   20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGT-VDIIRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVLFYTFGV-   95 (207)
Q Consensus        20 ~~~iaiDtEt~~l~~~~~~l~LiQl~~~~~~-~~l~~~~~~~~~~~~L~~ll~--d~~i~KV~Hn~~~D~~~L~~~~gi-   95 (207)
                      -+++.+|.||+ .+....++..+-+....+. .+-+.     .....+.+.+.  ||.|  +|||.+||..++..++.. 
T Consensus         6 ~~~~~~D~Et~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~f~~~i~~~dpdi--~~hNl~FD~~~i~~~~~~~   77 (575)
T 2py5_A            6 RKMYSCAFETT-TKVEDCRVWAYGYMNIEDHSEYKIG-----NSLDEFMAWVLKVQADL--YFHNLKFAGAFIINWLERN   77 (575)
T ss_dssp             CCEEEEEEEEC-CBTTBCCEEEEEEEESSCTTCEEEE-----SCHHHHHHHHHHHCCEE--EETTHHHHHHHHHHHHHHT
T ss_pred             CEEEEEEEEEC-CCCCCCEEEEEEEEECCCCEEEEHH-----HHHHHHHHHHHHCCCCE--EEECCCCCHHHHHHHHHHC
T ss_conf             51799999706-8977731479999717984077708-----99999999998659979--9988757999999999970


Q ss_pred             --CCCCHHH----------H-HHH---------------HHHHHHHC-CCHHHHHHHHHHHCCCCCCCC---EECCCCCC
Q ss_conf             --0000045----------7-898---------------86521100-000088777654200246752---00365654
Q gi|254780636|r   96 --RVRPVFC----------T-KIA---------------SRLTRTYT-NQHGLKDNLKELLGINISKAQ---QSSDWSAD  143 (207)
Q Consensus        96 --~~~~i~D----------T-~ia---------------s~l~~~~~-~~~~L~~L~~~~lg~~ldK~~---q~SdW~~r  143 (207)
                        ....-.+          . .+.               -.+.+++. .+.||.++++.+ +....|..   ...+|...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~DS~~l~~~SL~~va~~f-~l~~~K~~~~~~~~~~~~~  156 (575)
T 2py5_A           78 GFKWSADGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIYDSLKKLPFPVKKIAKDF-KLTVLKGDIDYHKERPVGY  156 (575)
T ss_dssp             TCEECTTCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEEEHHHHSCSCHHHHHHHT-TCCCCSSCCCTTSCCCTTC
T ss_pred             CCCCEECCCCCCCCCEEEECCEEEEEEEEEEECCEEEEEEEEEECCCCCCCCHHHHHHHH-CCCCCCCCCCHHHCCHHHH
T ss_conf             986203246766652267354579998999603301368999842144844799999873-7454556477444102233


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             432368999986459999999999999
Q gi|254780636|r  144 DLSDEQLQYAASDVVHLHALRLQFTEK  170 (207)
Q Consensus       144 pLs~~Qi~YAA~Dv~~l~~L~~~l~~~  170 (207)
                      .+.++.+.|+..||..|.+++..+.+.
T Consensus       157 ~~~~~~~~Y~~~Dv~ll~~i~~~~~~~  183 (575)
T 2py5_A          157 KITPEEYAYIKNDIQIIAEALLIQFKQ  183 (575)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             232989999999999999999999998


No 26 
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=97.31  E-value=0.00094  Score=39.80  Aligned_cols=140  Identities=18%  Similarity=0.244  Sum_probs=84.0

Q ss_pred             HCCCCCCEEEECCCCCCCCC-----C--------------CEEEEEEEE----ECCC------CEEEECCC----CCCCC
Q ss_conf             42489827997177789854-----4--------------507999984----1894------28997465----77857
Q gi|254780636|r   16 AARYVDAIAVDTETLGLMPR-----R--------------DRLCIVQLS----PGDG------TVDIIRIA----AGQKN   62 (207)
Q Consensus        16 ~l~~~~~iaiDtEt~~l~~~-----~--------------~~l~LiQl~----~~~~------~~~l~~~~----~~~~~   62 (207)
                      .++..+.||+|||++|+...     .              +.+.+||++    ..++      .++-+.+.    .....
T Consensus        41 ~I~~~~fVAiDtEFpGiv~~p~~~~~~t~d~rY~~lr~nVd~l~iIQlGLt~~~~~g~~p~~~~twqFNF~f~~~~d~~~  120 (333)
T 2p51_A           41 LIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACTWQFNFTFNLQDDMYA  120 (333)
T ss_dssp             HTTTSCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEECTTSCCCTTCSEEEEEBCCCTTTSCCC
T ss_pred             HHHCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCC
T ss_conf             98459989995331772567876668978999999997542145147999977258887888637999879778665504


Q ss_pred             C-----------------------HHHHH------HHHCCCCCEEECCCCHHHHHHHHHHH----------------CCC
Q ss_conf             0-----------------------67767------77323640230100001688865420----------------000
Q gi|254780636|r   63 A-----------------------PNLVG------MLVDEKREKIFHYGRFDIAVLFYTFG----------------VRV   97 (207)
Q Consensus        63 ~-----------------------~~L~~------ll~d~~i~KV~Hn~~~D~~~L~~~~g----------------i~~   97 (207)
                      +                       ..+.+      ++-++++.||.|++.+|+..|.+.+-                ...
T Consensus       121 ~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~sglv~~~~v~Wvtfhg~yD~~yLlk~l~g~~LP~~~~eF~~~l~~~F  200 (333)
T 2p51_A          121 PESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYF  200 (333)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTTTSSSCTTCEEEESSCHHHHHHHHHHHHCSCCCSSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
T ss_conf             78999999749677889860998888899998505541688739980661679999999708878867899999999977


Q ss_pred             CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0004578988652110000008877765420024675200365654432368999986459999999999999997
Q gi|254780636|r   98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR  173 (207)
Q Consensus        98 ~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~~  173 (207)
                      ..++||...++-+.+  .+-||..+++. ||+.   ..         -++   +=|..|+..+..+|-+|.+..-.
T Consensus       201 P~vYD~Kyia~~~~~--~~~gL~~lA~~-L~v~---r~---------g~~---HqAGsDSllT~~~F~kl~~~~f~  258 (333)
T 2p51_A          201 PKNYDIKYIMKSVLN--NSKGLQDIADD-LQIH---RI---------GPQ---HQAGSDALLTARIFFEIRSRYFD  258 (333)
T ss_dssp             SSEEEHHHHHTTTTC--CCCCHHHHHHH-TTCC---CC---------SCT---TSHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHCCC--CCCCHHHHHHH-CCCC---CC---------CCC---CCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             628718999976156--67659999997-4998---76---------776---45305899999999999998659


No 27 
>3nae_A DNA polymerase, GP43; RB69 DNA polymerase; HET: DNA G35 DOC DTP; 2.00A {Enterobacteria phage RB69} PDB: 3lzi_A* 3lzj_A* 1ig9_A* 1q9x_A* 2atq_A* 2dy4_A* 2oyq_A* 2ozm_A* 2ozs_A* 2p5g_A* 2p5o_A* 1q9y_A* 3l8b_A* 3lds_A* 3cq8_A* 1ih7_A* 1clq_A* 1waf_A* 1waj_A* 3cfr_A* ...
Probab=96.79  E-value=0.0059  Score=35.15  Aligned_cols=97  Identities=10%  Similarity=-0.041  Sum_probs=55.0

Q ss_pred             HCCCCCEEECCC-CHHHHHHHHHHHCC-------------------------------C--CCHHHHHHHHH-HHHHHCC
Q ss_conf             323640230100-00168886542000-------------------------------0--00045789886-5211000
Q gi|254780636|r   71 VDEKREKIFHYG-RFDIAVLFYTFGVR-------------------------------V--RPVFCTKIASR-LTRTYTN  115 (207)
Q Consensus        71 ~d~~i~KV~Hn~-~~D~~~L~~~~gi~-------------------------------~--~~i~DT~ias~-l~~~~~~  115 (207)
                      .||+|+ +|||+ .||+..|.+.....                               +  ..++|.+-..+ .......
T Consensus       208 ~dPDII-~GyN~~~FD~pYL~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~G~~~lD~~~l~~k~~~~~~~  286 (903)
T 3nae_A          208 KTPVIL-TGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQP  286 (903)
T ss_dssp             TCCSEE-ECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEEEEEEEETTCEECCHHHHHHHHSCCCCS
T ss_pred             CCCCEE-EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECEEEEEHHHHHHHHHHHCCC
T ss_conf             599899-9689877679999999998557632211254567652100002355314666043675289999998760201


Q ss_pred             CHHHHHHHHHHHCCCCCCCC-EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             00088777654200246752-0036565443236899998645999999999999
Q gi|254780636|r  116 QHGLKDNLKELLGINISKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE  169 (207)
Q Consensus       116 ~~~L~~L~~~~lg~~ldK~~-q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~  169 (207)
                      +++|..++..++|..-.+.. ...++.... ...-+.|...|+..+.+|.+++.-
T Consensus       287 sy~Ld~va~~~Lg~~k~~~~~~~~~~~~~~-~~~~~~Y~~~D~~L~~~L~~kl~~  340 (903)
T 3nae_A          287 SYSLDYISEFELNVGKLKYDGPISKLRESN-HQRYISYNIIAVYRVLQIDAKRQF  340 (903)
T ss_dssp             CCCHHHHHHHHHCCCCCCCSSCGGGHHHHH-HHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             CCHHHHHHHHHCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             123999999972888764421032330467-888988743279999999999878


No 28 
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1 strain kos} PDB: 1dml_B*
Probab=96.73  E-value=0.0046  Score=35.82  Aligned_cols=97  Identities=10%  Similarity=-0.026  Sum_probs=56.2

Q ss_pred             HCCCCCEEECCC-CHHHHHHHHHHH----CCC------------------------------CC--HHHHHHHHHHHHHH
Q ss_conf             323640230100-001688865420----000------------------------------00--04578988652110
Q gi|254780636|r   71 VDEKREKIFHYG-RFDIAVLFYTFG----VRV------------------------------RP--VFCTKIASRLTRTY  113 (207)
Q Consensus        71 ~d~~i~KV~Hn~-~~D~~~L~~~~g----i~~------------------------------~~--i~DT~ias~l~~~~  113 (207)
                      .||+|+ +|||+ .||+..|.....    ..+                              .+  ++|++-..+-- ..
T Consensus       415 ~dPDII-tGYNi~~FDlpYL~~Ra~~l~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~i~Gri~iDl~~~~k~~-~k  492 (1193)
T 2gv9_A          415 YGPEFV-TGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKVNGMVNIDMYGIITDK-IK  492 (1193)
T ss_dssp             HCCSEE-EESSTTTTHHHHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------CEEETTBEEEEHHHHHTTT-CC
T ss_pred             CCCCEE-EEECCCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCEECCCCCCCCCCCCEEEECCEEEEEHHHHHHHH-CC
T ss_conf             399889-9725547747899999999779987882755765662020356665565404623466998437887663-04


Q ss_pred             CCCHHHHHHHHHHHCCCCCC-CC-EEC-CCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             00000887776542002467-52-003-6565443-236899998645999999999999
Q gi|254780636|r  114 TNQHGLKDNLKELLGINISK-AQ-QSS-DWSADDL-SDEQLQYAASDVVHLHALRLQFTE  169 (207)
Q Consensus       114 ~~~~~L~~L~~~~lg~~ldK-~~-q~S-dW~~rpL-s~~Qi~YAA~Dv~~l~~L~~~l~~  169 (207)
                      ..+++|.++++++||.+-.. +. ... -|...|- ...-..|+..|+..+..|+.++..
T Consensus       493 L~sY~L~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~~~~~l~~Y~l~Da~lv~~L~~kl~~  552 (1193)
T 2gv9_A          493 LSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKFLP  552 (1193)
T ss_dssp             CSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             CCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             666889999999727777666888888887656778999999998879999999999878


No 29 
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA- binding, DNA-directed DNA polymerase, exonuclease; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=96.52  E-value=0.012  Score=33.43  Aligned_cols=102  Identities=17%  Similarity=0.056  Sum_probs=60.0

Q ss_pred             HHHHH--HCCCCCEEECCC-CHHHHHHHHHH---HCC----------------------------------CCC--HHHH
Q ss_conf             76777--323640230100-00168886542---000----------------------------------000--0457
Q gi|254780636|r   66 LVGML--VDEKREKIFHYG-RFDIAVLFYTF---GVR----------------------------------VRP--VFCT  103 (207)
Q Consensus        66 L~~ll--~d~~i~KV~Hn~-~~D~~~L~~~~---gi~----------------------------------~~~--i~DT  103 (207)
                      +..++  .||+|+ +|||+ .||+..|.+..   |+.                                  +.+  ++|+
T Consensus       320 F~~~i~~~DPDII-~GyNi~~FDlpYL~~Ra~~l~i~~~~~~gr~~~~~~~~~~~~~~~~~~g~~~~~~~~i~Gr~~iDl  398 (919)
T 3iay_A          320 WRNFIIKVDPDVI-IGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRLQLDL  398 (919)
T ss_dssp             HHHHHHHHCCSEE-EESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTCEEEEH
T ss_pred             HHHHHHHCCCCEE-EEECCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEH
T ss_conf             9999866299879-875785753799999999858751433176577664456564345433564422898737899877


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHCCCCCC-C-CEECC-CCCCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             898865211000000887776542002467-5-20036-56544-3236899998645999999999999
Q gi|254780636|r  104 KIASRLTRTYTNQHGLKDNLKELLGINISK-A-QQSSD-WSADD-LSDEQLQYAASDVVHLHALRLQFTE  169 (207)
Q Consensus       104 ~ias~l~~~~~~~~~L~~L~~~~lg~~ldK-~-~q~Sd-W~~rp-Ls~~Qi~YAA~Dv~~l~~L~~~l~~  169 (207)
                      .-..+-. ....+++|.+++++++|.+-.. . ...++ |...+ -...-+.|+..||..+..|.+++.-
T Consensus       399 ~~~~~~~-~kl~sy~L~~Va~~~lg~~K~dv~~~~i~~~~~~~~e~~~~l~~Y~l~Da~l~~~L~~kl~~  467 (919)
T 3iay_A          399 LQFIQRE-YKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKLMA  467 (919)
T ss_dssp             HHHHHHH-CCCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHH-CCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999875-65672328999987715887643044435777535267999999985436889999999999


No 30 
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, X-RAY diffraction, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=96.14  E-value=0.0022  Score=37.62  Aligned_cols=28  Identities=29%  Similarity=0.387  Sum_probs=22.7

Q ss_pred             CCCCCCEEEECCCCCCCCCCCEEEEEEEEE
Q ss_conf             248982799717778985445079999841
Q gi|254780636|r   17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSP   46 (207)
Q Consensus        17 l~~~~~iaiDtEt~~l~~~~~~l~LiQl~~   46 (207)
                      ....+.|.+||||||++|.++++  ||+|.
T Consensus         6 ~~~~~lV~lD~ETTGLdp~~d~I--IEIaa   33 (194)
T 2gbz_A            6 AGNDRLIWIDLEMTGLDTDRDSI--IEIAT   33 (194)
T ss_dssp             --CCEEEEEEEEESCSCTTTCCE--EEEEE
T ss_pred             CCCCCEEEEEEECCCCCCCCCEE--EEEEE
T ss_conf             77899899987789999999837--99999


No 31 
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli K12} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=96.01  E-value=0.0028  Score=37.09  Aligned_cols=27  Identities=33%  Similarity=0.572  Sum_probs=21.8

Q ss_pred             CCCCCEEEECCCCCCCCCCCEEEEEEEEE
Q ss_conf             48982799717778985445079999841
Q gi|254780636|r   18 RYVDAIAVDTETLGLMPRRDRLCIVQLSP   46 (207)
Q Consensus        18 ~~~~~iaiDtEt~~l~~~~~~l~LiQl~~   46 (207)
                      ++.++|.+|+||||++|.++++  ||||.
T Consensus         3 ~~~~lv~lD~ETTGL~p~~D~I--IeIaa   29 (180)
T 2igi_A            3 NENNLIWIDLEMTGLDPERDRI--IEIAT   29 (180)
T ss_dssp             GGGCEEEEEEEESSSCTTTCCE--EEEEE
T ss_pred             CCCCEEEEEEECCCCCCCCCEE--EEEEE
T ss_conf             8897899986789999999847--99999


No 32 
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli k-12} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=95.83  E-value=0.0074  Score=34.60  Aligned_cols=142  Identities=15%  Similarity=0.098  Sum_probs=73.7

Q ss_pred             CCCEEEECCCCCCCCCCCEEEEEEEEECCCC-EEEECCCC-CC--------------CCCHHHHHHH--HCCCCCEEECC
Q ss_conf             9827997177789854450799998418942-89974657-78--------------5706776777--32364023010
Q gi|254780636|r   20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGT-VDIIRIAA-GQ--------------KNAPNLVGML--VDEKREKIFHY   81 (207)
Q Consensus        20 ~~~iaiDtEt~~l~~~~~~l~LiQl~~~~~~-~~l~~~~~-~~--------------~~~~~L~~ll--~d~~i~KV~Hn   81 (207)
                      -.+++||.|+.+-+    ++.-|.+...... ++.+.... ..              .....+..++  .||+|+ +|||
T Consensus       153 l~vlsfDIE~~~~~----~i~~I~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~sE~~LL~~F~~~i~~~DPDII-~GyN  227 (786)
T 3k59_A          153 LKWVSIDIETTRHG----ELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVASRPQLLEKLNAWFANYDPDVI-IGWN  227 (786)
T ss_dssp             CCEEEEEEEECTTS----CEEEEEEEETTEEEEEEESSCCSCCTTCSSEEEEESSHHHHHHHHHHHHHHHCCSEE-EESS
T ss_pred             CEEEEEEEEECCCC----CEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEE-EECC
T ss_conf             14899988975889----889999856998389999467777777753899969999999999999997099999-9728


Q ss_pred             C-CHHHHHHHHHH---HCC-------------------------CCC--HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf             0-00168886542---000-------------------------000--0457898865211000000887776542002
Q gi|254780636|r   82 G-RFDIAVLFYTF---GVR-------------------------VRP--VFCTKIASRLTRTYTNQHGLKDNLKELLGIN  130 (207)
Q Consensus        82 ~-~~D~~~L~~~~---gi~-------------------------~~~--i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~  130 (207)
                      . .||+..|.+..   |+.                         ..+  ++|+.-..+-.-....+++|.++++++||..
T Consensus       228 i~~FDlpyL~~Ra~~~~i~~~lgr~~~~~~~~~~~~~~~~~~~~i~Gr~~iD~~~~~~~~~~~~~sy~L~~va~~~L~~~  307 (786)
T 3k59_A          228 VVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEG  307 (786)
T ss_dssp             TTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHTTCCCSCCSHHHHHHHHHCCC
T ss_pred             CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEHHHHHHHHHHHHCCCCCCHHHHHHHHCCCC
T ss_conf             86867999999999818973026767502300134346537871076880899999999752554378899999975788


Q ss_pred             CCC--C-CEECC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             467--5-20036----56544323689999864599999999999
Q gi|254780636|r  131 ISK--A-QQSSD----WSADDLSDEQLQYAASDVVHLHALRLQFT  168 (207)
Q Consensus       131 ldK--~-~q~Sd----W~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~  168 (207)
                      ..-  . .....    |...  ...-..|+..|+..+..|.+++.
T Consensus       308 k~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~D~~L~~~L~~kl~  350 (786)
T 3k59_A          308 KSIDNPWDRMDEIDRRFAED--KPALATYNLKNCELVTQIFHKTE  350 (786)
T ss_dssp             CC-CCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHCCHHH--HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             66678677534554246145--88999999888999999999856


No 33 
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=95.45  E-value=0.11  Score=27.77  Aligned_cols=77  Identities=12%  Similarity=0.223  Sum_probs=42.7

Q ss_pred             EECCCCHHH-HHHHHHH---HCCC----CCHHHHHHHH-HHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHH
Q ss_conf             301000016-8886542---0000----0004578988-65211000000887776542002467520036565443236
Q gi|254780636|r   78 IFHYGRFDI-AVLFYTF---GVRV----RPVFCTKIAS-RLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDE  148 (207)
Q Consensus        78 V~Hn~~~D~-~~L~~~~---gi~~----~~i~DT~ias-~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~  148 (207)
                      +.++..+|. .+|...+   ++..    ..++|++-.. ...+....+++|..+++. +|++.+.               
T Consensus       109 ~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~kL~~l~~~-~gi~~~~---------------  172 (204)
T 1w0h_A          109 LLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LGMDYDG---------------  172 (204)
T ss_dssp             EEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHH-TTCCCCS---------------
T ss_pred             HHCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCHHHHHHH-CCCCCCC---------------
T ss_conf             211035648999999999818998642451676888888875034578899999998-6999999---------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999986459999999999999
Q gi|254780636|r  149 QLQYAASDVVHLHALRLQFTEK  170 (207)
Q Consensus       149 Qi~YAA~Dv~~l~~L~~~l~~~  170 (207)
                      +-+-|..||..+-+|+.+|.++
T Consensus       173 ~aH~Al~Da~~ta~i~~~ll~~  194 (204)
T 1w0h_A          173 RPHCGLDDSKNIARIAVRMLQD  194 (204)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHC
T ss_conf             8848799999999999999987


No 34 
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, cytoplasm, exonuclease, hydrolase, magnesium, metal-binding, nonsense- mediated mRNA decay; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.39  E-value=0.023  Score=31.78  Aligned_cols=99  Identities=17%  Similarity=0.104  Sum_probs=58.9

Q ss_pred             HHCCCCCEEECCCCHHHHHHHHHH-HCCC--------------CCHHHHHHHHHHH--HHHCCCHHHHHHHHHHHCCC--
Q ss_conf             732364023010000168886542-0000--------------0004578988652--11000000887776542002--
Q gi|254780636|r   70 LVDEKREKIFHYGRFDIAVLFYTF-GVRV--------------RPVFCTKIASRLT--RTYTNQHGLKDNLKELLGIN--  130 (207)
Q Consensus        70 l~d~~i~KV~Hn~~~D~~~L~~~~-gi~~--------------~~i~DT~ias~l~--~~~~~~~~L~~L~~~~lg~~--  130 (207)
                      +.+.+.+.||||+-+|+..+.+.| |..|              ..++||...+...  ......-+|..+.+.+-...  
T Consensus       272 l~~~kkpiVgHN~~~Dl~~l~~~F~gpLP~~~~eFk~~v~~lFP~i~DTK~la~~~~~~~~~~~t~L~~l~~~l~~~~~~  351 (507)
T 3d45_A          272 IANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFD  351 (507)
T ss_dssp             HHHHCCEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTTCC
T ss_pred             HHHCCCEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf             97259839992438889999998428899679999999999777505888776316744467787699999998325789


Q ss_pred             -----CCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -----4675200365654432368999986459999999999999997
Q gi|254780636|r  131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR  173 (207)
Q Consensus       131 -----ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~~  173 (207)
                           ........+++.     ++.+=|+.|++.|-.++-++...|..
T Consensus       352 ~~~i~~~~~~~~~~~~~-----~~~HeAGyDA~mTg~vF~~l~~~l~~  394 (507)
T 3d45_A          352 PPKVESAEGFPSYDTAS-----EQLHEAGYDAYITGLCFISMANYLGS  394 (507)
T ss_dssp             CCCEEECTTSCCCC---------CCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCCEECCCCCCCCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98342265666555678-----88735388899999999999999731


No 35 
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=95.14  E-value=0.14  Score=27.20  Aligned_cols=95  Identities=8%  Similarity=-0.043  Sum_probs=51.8

Q ss_pred             HCCCCCEEECCC-CHHHHHHHHHHHCC-------------------------------CC--CHHHHHHHHHHH-HHHCC
Q ss_conf             323640230100-00168886542000-------------------------------00--004578988652-11000
Q gi|254780636|r   71 VDEKREKIFHYG-RFDIAVLFYTFGVR-------------------------------VR--PVFCTKIASRLT-RTYTN  115 (207)
Q Consensus        71 ~d~~i~KV~Hn~-~~D~~~L~~~~gi~-------------------------------~~--~i~DT~ias~l~-~~~~~  115 (207)
                      .||+|+ +|||. .||+..|.+.....                               ..  ..+|.+-..+.. .....
T Consensus       205 ~dPDiI-~G~N~~~FD~pYL~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~l~~~~~~~~~~~~  283 (388)
T 1noy_A          205 KRPAIF-TGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYSIDGVSILDYLDLYKKFAFTNLP  283 (388)
T ss_dssp             SCCSEE-ECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEEEETTSEECCHHHHHHHHTCCCCS
T ss_pred             CCCCEE-EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCHHHHHHHHHHHHHCCCCC
T ss_conf             388889-8706788517899999998526421011375676642255402565225642142167899999976303423


Q ss_pred             CHHHHHHHHHHHCCCCCC-CCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             000887776542002467-5200365654432368999986459999999999
Q gi|254780636|r  116 QHGLKDNLKELLGINISK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF  167 (207)
Q Consensus       116 ~~~L~~L~~~~lg~~ldK-~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l  167 (207)
                      +.+|.......++..... ......|.... .+.-+.|+..||..+++|.+++
T Consensus       284 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d-~~kli~Yn~~D~~l~~~L~~kl  335 (388)
T 1noy_A          284 SFSLESVAQHETKKGKLPYDGPINKLRETN-HQRYISYNIIDVESVQAIDKIR  335 (388)
T ss_dssp             CCSHHHHHHHHHSCCCCCCSSCGGGHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCCCCCCHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             202888999866887667256666665418-9999999999999999999997


No 36 
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=94.39  E-value=0.22  Score=26.07  Aligned_cols=134  Identities=10%  Similarity=0.088  Sum_probs=66.8

Q ss_pred             CCEEEECCCCCCCCCCCE-EEEEEEEE-----CCCC------EE-EECCCCCCCC-----------------CH------
Q ss_conf             827997177789854450-79999841-----8942------89-9746577857-----------------06------
Q gi|254780636|r   21 DAIAVDTETLGLMPRRDR-LCIVQLSP-----GDGT------VD-IIRIAAGQKN-----------------AP------   64 (207)
Q Consensus        21 ~~iaiDtEt~~l~~~~~~-l~LiQl~~-----~~~~------~~-l~~~~~~~~~-----------------~~------   64 (207)
                      ..|.||+||||+++.++. --.|||+.     ..+.      +. ++.+......                 ++      
T Consensus        20 ~~vViD~ETTg~~~~~d~~~EIIEIgaV~vd~~~~~i~~~~~F~~~VkP~~~~~ls~~~~~ltGIt~e~v~~ap~f~evl   99 (308)
T 3cg7_A           20 TLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDTADTFDVVY   99 (308)
T ss_dssp             EEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHTSCBHHHHH
T ss_pred             EEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCHHHHHCCCHHHHHH
T ss_conf             18999976089987889996079999999980599897841888778988888679889987197989943110045668


Q ss_pred             -HHHHHHHCCCC----CEEECCCCHHHH-HHHHHH---HCCC----CCHHHHHHHH-HHHH-----HHCCCHHHHHHHHH
Q ss_conf             -77677732364----023010000168-886542---0000----0004578988-6521-----10000008877765
Q gi|254780636|r   65 -NLVGMLVDEKR----EKIFHYGRFDIA-VLFYTF---GVRV----RPVFCTKIAS-RLTR-----TYTNQHGLKDNLKE  125 (207)
Q Consensus        65 -~L~~ll~d~~i----~KV~Hn~~~D~~-~L~~~~---gi~~----~~i~DT~ias-~l~~-----~~~~~~~L~~L~~~  125 (207)
                       .+.+++.+..+    .-+.+++.+|.. ++.+.+   |+..    .+.+|++-.. ....     ....+++|..++++
T Consensus       100 ~~f~~~l~~~~l~~~~~~f~~~~~~D~~~~L~~~~~~~~i~~P~~~~~~iDl~~~~~~~~~~~~~~~~~~~~~L~~l~~~  179 (308)
T 3cg7_A          100 EQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNEY  179 (308)
T ss_dssp             HHHHHHHHHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf             89999973677323289993154566999999999980999872013244599999999997432277777789999997


Q ss_pred             HHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             420024675200365654432368999986459999999999999
Q gi|254780636|r  126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK  170 (207)
Q Consensus       126 ~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~  170 (207)
                       +|++..         .      +-+-|..||..+.+|+.+|.++
T Consensus       180 -~gI~~~---------g------~aH~ALdDA~~tA~Il~kLl~~  208 (308)
T 3cg7_A          180 -YDLPTI---------G------RAHDAMDDCLNIATILQRMINM  208 (308)
T ss_dssp             -TTCCCC---------S------CTTCHHHHHHHHHHHHHHHHHT
T ss_pred             -CCCCCC---------C------CCCCHHHHHHHHHHHHHHHHHC
T ss_conf             -699999---------9------8968099999999999999977


No 37 
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase/RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=92.85  E-value=0.18  Score=26.48  Aligned_cols=99  Identities=18%  Similarity=0.097  Sum_probs=57.3

Q ss_pred             HHCCCCCEEECCCCHHHHHHHHHHH-CCC--------------CCHHHHHHHHHH--HHHHCCCHHHHHHHHHHHCCCC-
Q ss_conf             7323640230100001688865420-000--------------000457898865--2110000008877765420024-
Q gi|254780636|r   70 LVDEKREKIFHYGRFDIAVLFYTFG-VRV--------------RPVFCTKIASRL--TRTYTNQHGLKDNLKELLGINI-  131 (207)
Q Consensus        70 l~d~~i~KV~Hn~~~D~~~L~~~~g-i~~--------------~~i~DT~ias~l--~~~~~~~~~L~~L~~~~lg~~l-  131 (207)
                      +.+.+...||||+-.|+..+...|- ..|              ..++||+..+.-  +......-+|..+.+.+-.... 
T Consensus       277 l~~~~kpiVgHN~~~Dl~~~~~~f~~~LP~~~~eFk~~v~~~FP~i~DTK~l~~~~~~~~~~~~t~L~~l~~~l~~~~~~  356 (430)
T 2a1r_A          277 IANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFN  356 (430)
T ss_dssp             HHHHCCEEEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCSSEEEHHHHHTSTTTTTTCSCCSHHHHHHHTTSTTCC
T ss_pred             HHHCCCCEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf             98659977866428889999987158999789999999998767300437653136644678886689999997206789


Q ss_pred             ------CCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ------675200365654432368999986459999999999999997
Q gi|254780636|r  132 ------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR  173 (207)
Q Consensus       132 ------dK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~~  173 (207)
                            ..+.+..++     ...+.+=|+-|++.|=.++-+|...|..
T Consensus       357 ~p~i~~~~~~~~~~~-----~~~~~HeAGyDA~mTG~vF~~l~~~l~~  399 (430)
T 2a1r_A          357 PPKVESAEGFPSYDT-----ASEQLHEAGYDAYITGLCFISMANYLGS  399 (430)
T ss_dssp             CCCEEECTTCCCC----------CCCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred             CCCEECCCCCCCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             983433766665568-----8998617088999999999999998741


No 38 
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=89.05  E-value=0.97  Score=22.29  Aligned_cols=74  Identities=12%  Similarity=0.199  Sum_probs=41.1

Q ss_pred             CCCCHHHH-HHHHHH---HCCC----CCHHHHHHHH-HHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHH
Q ss_conf             10000168-886542---0000----0004578988-6521100000088777654200246752003656544323689
Q gi|254780636|r   80 HYGRFDIA-VLFYTF---GVRV----RPVFCTKIAS-RLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL  150 (207)
Q Consensus        80 Hn~~~D~~-~L~~~~---gi~~----~~i~DT~ias-~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi  150 (207)
                      +++.+|+. +|...+   ++..    ...+|++-.. .+......+++|.++++ ++|+..+         .+      -
T Consensus       229 ~~g~~Dl~~fL~~~~~~~~i~~p~~~~~~iDl~~~~~~~~~~~~~~~~L~~l~e-~lgI~~e---------G~------~  292 (349)
T 1zbu_A          229 TDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLE-KLGMDYD---------GR------P  292 (349)
T ss_dssp             ESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHHH-HTTCCCC---------SC------T
T ss_pred             ECCHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCHHHHHH-HCCCCCC---------CC------C
T ss_conf             053888999999999995899863257666599999998568878989999999-7699999---------98------8


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             9998645999999999999
Q gi|254780636|r  151 QYAASDVVHLHALRLQFTE  169 (207)
Q Consensus       151 ~YAA~Dv~~l~~L~~~l~~  169 (207)
                      +-|..||..+-+|+.+|.+
T Consensus       293 H~ALdDA~~tA~Il~~LL~  311 (349)
T 1zbu_A          293 HCGLDDSKNIARIAVRMLQ  311 (349)
T ss_dssp             TCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH
T ss_conf             0969999999999999997


No 39 
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=73.52  E-value=4  Score=18.73  Aligned_cols=76  Identities=12%  Similarity=0.222  Sum_probs=42.5

Q ss_pred             EECCCCHHHH-HHHHHH---HCCC----CCHHHHHHHHH-HHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHH
Q ss_conf             3010000168-886542---0000----00045789886-5211000000887776542002467520036565443236
Q gi|254780636|r   78 IFHYGRFDIA-VLFYTF---GVRV----RPVFCTKIASR-LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDE  148 (207)
Q Consensus        78 V~Hn~~~D~~-~L~~~~---gi~~----~~i~DT~ias~-l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~  148 (207)
                      +.+++.+|.. +|...+   ++..    .+.+|++.... .......+++|.++++. +|++.+         .+     
T Consensus       177 ~~~~g~~D~~~fL~~~~~~~~i~~p~~~~~~iDl~~~~~~~~~~~~~~~~L~~l~~~-~gi~~~---------G~-----  241 (299)
T 1zbh_A          177 LLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LGMDYD---------GR-----  241 (299)
T ss_dssp             EEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHH-TTCCCC---------SC-----
T ss_pred             EECCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCHHHHHHH-CCCCCC---------CC-----
T ss_conf             750507669999999999708998743574776999999984687568799999998-699989---------98-----


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             899998645999999999999
Q gi|254780636|r  149 QLQYAASDVVHLHALRLQFTE  169 (207)
Q Consensus       149 Qi~YAA~Dv~~l~~L~~~l~~  169 (207)
                       -+-|..||..+-+|+.+|..
T Consensus       242 -~H~AldDA~~tA~Il~klL~  261 (299)
T 1zbh_A          242 -PNCGLDDSKNIARIAVRMLQ  261 (299)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHHHHH
T ss_conf             -72839999999999999997


No 40 
>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}
Probab=33.58  E-value=20  Score=14.63  Aligned_cols=16  Identities=13%  Similarity=0.100  Sum_probs=8.7

Q ss_pred             CCCCCCHHHHHHHHHH
Q ss_conf             6544323689999864
Q gi|254780636|r  141 SADDLSDEQLQYAASD  156 (207)
Q Consensus       141 ~~rpLs~~Qi~YAA~D  156 (207)
                      +.|+.+..++.-...+
T Consensus       300 ~~R~~~~~~ln~~ls~  315 (320)
T 2hwk_A          300 KARTHNPYKLSSTLTN  315 (320)
T ss_dssp             CCCCCCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
T ss_conf             8665686784115455


No 41 
>2vwa_A Putative uncharacterized protein PF13_0012; unknown function; HET: PTY; 2.5A {Plasmodium falciparum}
Probab=27.93  E-value=25  Score=14.05  Aligned_cols=25  Identities=16%  Similarity=0.231  Sum_probs=14.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3236899998645999999999999
Q gi|254780636|r  145 LSDEQLQYAASDVVHLHALRLQFTE  169 (207)
Q Consensus       145 Ls~~Qi~YAA~Dv~~l~~L~~~l~~  169 (207)
                      ||.+|..|-..|-.|+.++-+.|.+
T Consensus        42 LSn~Qq~y~ind~dY~rkiVQ~L~E   66 (101)
T 2vwa_A           42 LSNDQKDSHVNNMEYMQKFVQGLQE   66 (101)
T ss_dssp             SCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHCHHHHHHHHHHHHHH
T ss_conf             3768899883529999999998886


Done!