HHsearch alignment for GI: 254780638 and conserved domain: PRK10266
>PRK10266 curved DNA-binding protein CbpA; Provisional.
Probab=100.00 E-value=0 Score=598.96 Aligned_cols=302 Identities=32% Similarity=0.577 Sum_probs=252.7
Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 98745248718799889999999999999997569988798799999999999876099899999877248765314555
Q gi|254780638|r 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALEYGAQS 80 (384)
Q Consensus 1 ~~~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~~~~~~~~ 80 (384)
T Consensus 1 M~~kDyY~vLGV~~~As~~EIKkAYRkLA~kyHPD~n~-d~~AeekFkeI~eAYeVLsD~~KR~~YD~~~~~~~~~~~~~ 79 (306)
T PRK10266 1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNR 79 (306)
T ss_pred CCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 98677088759899989999999999999986879866-92899999999999998689878888611011246876566
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 66521001443222222334443561013760344422221222221123222100000135544455443100023432
Q gi|254780638|r 81 QGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSSTGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGS 160 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~d~f~~~f~~~~~~~~~~~~~~~~~~~~~d~~~~~~islee~~~G~~~~i~~~~~~~C~~C~G~ 160 (384)
T Consensus 80 ~~-~~~~~~~~~~~~~~dif~~~fg~~~~~-----~~~~~~~~g~d~~~~~~i~le~~~~g~~~~i~~~----------- 142 (306)
T PRK10266 80 QF-QHGDGQSFNAEDFDDIFSSIFGQHARQ-----SRQRPAARGHDIEIEVAVFLEETLTEHKRTISYN----------- 142 (306)
T ss_pred CC-CCCCCCCCCCCCHHHHHHHCCCCCCCC-----CCCCCCCCCCCCEEEEEEEHHHHCCCCCEEEEEC-----------
T ss_conf 66-678888876541445443004787889-----9989987899845786366899406771499961-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCEECCCCCCCHHHHHCCCCCCCEEEC
Q ss_conf 25788542103553101121001100124686166656554698354120011210001110000011001148501203
Q gi|254780638|r 161 GAKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLS 240 (384)
Q Consensus 161 g~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~g~i~~~~c~~C~G~g~~~~~~~~~I~Ip~G~~~G~~i~~~ 240 (384)
T Consensus 143 ----------~p~~~~~G~~~-----------------------------------~~~~k~~~v~IP~G~~~G~~i~~~ 177 (306)
T PRK10266 143 ----------LPVYNAFGMIE-----------------------------------QEIPKTLNVKIPAGVGNGQRIRLK 177 (306)
T ss_pred ----------CCEEECCCEEE-----------------------------------EECCCEEEEECCCCCCCCCEEEEE
T ss_conf ----------33571785166-----------------------------------333637988719987789789973
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCEEEEEECHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCEEEECCE
Q ss_conf 67765678841664157531034684286414846999846665135424885167888231011685177887898881
Q gi|254780638|r 241 GEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEGTQTGKQFRLKGK 320 (384)
Q Consensus 241 g~G~~~~~~~~~GDl~i~i~~~~h~~f~r~g~dL~~~~~I~l~eal~G~~~~i~tldG~~i~i~i~~~~~~~~~~~i~g~ 320 (384)
T Consensus 178 G~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Is~~eAllG~~v~v~tldG~-v~l~ip~gtq~g~~lrl~g~ 256 (306)
T PRK10266 178 GQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVAPWEAALGAKVTVPTLKES-ILLTIPPGSQAGQRLRIKGK 256 (306)
T ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCEEEECCEEEEEEEECHHHHHCCCEEEEECCCCC-EEEEECCCCCCCCEEEECCC
T ss_conf 58887888896763799999768997189799789999976899516988995289997-89987989899988998499
Q ss_pred ECCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 0200689886527999999929899999999999999872888881005
Q gi|254780638|r 321 GMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQISSQDNNPQST 369 (384)
Q Consensus 321 G~p~~~~~~rGdl~i~~~v~~P~~Ls~~qk~ll~~l~~~~~~~~~~~~~ 369 (384)
T Consensus 257 G~~~~--~~~GDL~V~~~v~~P~~ls~~q~~ll~~l~~~~~-~~~pr~~ 302 (306)
T PRK10266 257 GLVSK--KQTGDLYAVLKIVMPPKPDEKTAALWQQLADAQS-SFDPRKD 302 (306)
T ss_pred CCCCC--CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCC-CCCCHHH
T ss_conf 98898--9988889999998799999999999999997535-7891576