HHsearch alignment for GI: 254780638 and conserved domain: TIGR02642
>TIGR02642 phage_xxxx uncharacterized phage protein; InterPro: IPR013464 This uncharacterised protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus (strain YJ016), Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to the phage lambda antitermination protein Q..
Probab=93.82 E-value=0.017 Score=38.53 Aligned_cols=44 Identities=11% Similarity=0.066 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCH
Q ss_conf 99999999999999975699887987999999999998760998
Q gi|254780638|r 17 TDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60 (384)
Q Consensus 17 s~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~ 60 (384)
T Consensus 61 D~~A~~~L~~~~~~~~~~~~~~G~~~~~l~~l~l~~~L~r~~~~ 104 (270)
T TIGR02642 61 DVEAIQKLLAHICEQLEVSIAPGVAAAALAKLALNEVLERLVDA 104 (270)
T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 88999999998524556676626899999850006771775311