HHsearch alignment for GI: 254780638 and conserved domain: cd06257
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.69 E-value=3.9e-17 Score=143.53 Aligned_cols=55 Identities=58% Similarity=1.083 Sum_probs=53.7
Q ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 5248718799889999999999999997569988798799999999999876099
Q gi|254780638|r 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRD 59 (384)
Q Consensus 5 DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD 59 (384)
T Consensus 1 d~Y~vLgl~~~at~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~iL~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred CHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 9287779999939999999999999881998898817899999979999968438