Query gi|254780638|ref|YP_003065051.1| molecular chaperone protein DnaJ [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 384
No_of_seqs 155 out of 4697
Neff 7.9
Searched_HMMs 39220
Date Sun May 29 22:00:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780638.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02349 DnaJ_bact chaperone 100.0 0 0 873.3 25.8 355 5-359 1-385 (386)
2 PRK10767 chaperone protein Dna 100.0 0 0 786.5 31.8 371 1-383 1-375 (376)
3 COG0484 DnaJ DnaJ-class molecu 100.0 0 0 775.5 28.0 370 1-381 1-371 (371)
4 PTZ00037 DnaJ_C chaperone prot 100.0 0 0 686.0 27.8 330 1-357 23-362 (422)
5 PRK10266 curved DNA-binding pr 100.0 0 0 599.0 25.2 302 1-369 1-302 (306)
6 KOG0712 consensus 100.0 0 0 559.2 22.7 328 1-356 1-336 (337)
7 KOG0713 consensus 100.0 0 0 379.2 11.1 312 2-347 14-328 (336)
8 KOG0715 consensus 100.0 2.8E-45 0 345.3 12.8 248 2-284 41-288 (288)
9 KOG0714 consensus 100.0 1.4E-29 3.5E-34 232.9 14.0 300 3-324 2-305 (306)
10 pfam01556 DnaJ_C DnaJ C termin 99.9 2.9E-25 7.5E-30 201.9 10.1 100 253-352 1-101 (101)
11 KOG0691 consensus 99.9 2.2E-24 5.5E-29 195.6 8.4 75 1-75 2-76 (296)
12 KOG0716 consensus 99.9 7.7E-24 2E-28 191.7 7.7 73 4-76 31-103 (279)
13 KOG0717 consensus 99.9 1.5E-22 3.7E-27 182.5 8.1 77 2-78 6-83 (508)
14 KOG0718 consensus 99.9 1.2E-22 3.1E-27 183.0 7.3 76 3-78 8-86 (546)
15 COG2214 CbpA DnaJ-class molecu 99.9 2.5E-22 6.3E-27 180.9 6.9 69 2-70 4-73 (237)
16 KOG0719 consensus 99.8 3.7E-21 9.5E-26 172.4 6.8 69 3-71 13-83 (264)
17 KOG0624 consensus 99.8 3.6E-21 9.1E-26 172.5 6.7 74 2-76 392-468 (504)
18 KOG0550 consensus 99.8 2.1E-20 5.4E-25 167.0 5.8 66 3-68 372-438 (486)
19 pfam00226 DnaJ DnaJ domain. Dn 99.8 1.7E-19 4.4E-24 160.4 7.9 63 5-67 1-63 (63)
20 KOG0721 consensus 99.7 2.1E-17 5.4E-22 145.5 6.7 72 2-73 97-168 (230)
21 smart00271 DnaJ DnaJ molecular 99.7 2E-17 5E-22 145.7 6.3 59 4-62 1-60 (60)
22 cd06257 DnaJ DnaJ domain or J- 99.7 3.9E-17 1E-21 143.5 6.9 55 5-59 1-55 (55)
23 KOG0722 consensus 99.6 2.9E-16 7.4E-21 137.3 4.5 65 4-69 33-97 (329)
24 KOG0720 consensus 99.6 7E-16 1.8E-20 134.6 6.2 67 3-70 234-300 (490)
25 PRK09430 djlA Dna-J like membr 99.6 2.2E-15 5.7E-20 130.9 6.8 56 4-59 202-264 (269)
26 TIGR02349 DnaJ_bact chaperone 99.5 1.5E-13 3.8E-18 117.9 10.1 162 96-340 102-285 (386)
27 COG5407 SEC63 Preprotein trans 99.5 1.9E-14 4.9E-19 124.2 5.1 72 4-75 98-174 (610)
28 COG0484 DnaJ DnaJ-class molecu 99.3 2.7E-11 6.8E-16 101.7 8.4 44 223-266 292-335 (371)
29 PRK10767 chaperone protein Dna 99.1 1.3E-09 3.4E-14 89.5 9.8 43 223-265 289-331 (376)
30 pfam00684 DnaJ_CXXCXGXG DnaJ c 99.1 1.1E-10 2.8E-15 97.2 4.0 75 141-215 1-79 (79)
31 PRK01356 hscB co-chaperone Hsc 99.0 1.6E-09 4E-14 89.0 8.2 64 4-67 2-70 (166)
32 PRK03578 hscB co-chaperone Hsc 98.9 4.4E-09 1.1E-13 85.8 8.0 65 3-67 5-76 (176)
33 PRK05014 hscB co-chaperone Hsc 98.9 3.1E-09 8E-14 86.8 7.1 63 5-67 2-71 (171)
34 PTZ00100 DnaJ chaperone protei 98.9 2.9E-09 7.5E-14 87.0 5.7 54 1-58 60-113 (114)
35 COG5269 ZUO1 Ribosome-associat 98.9 2.5E-09 6.4E-14 87.5 5.2 67 3-69 42-113 (379)
36 KOG1789 consensus 98.9 4.4E-09 1.1E-13 85.8 5.7 56 1-59 1278-1337(2235)
37 KOG1150 consensus 98.8 1.1E-08 2.9E-13 82.8 7.1 64 4-67 53-117 (250)
38 PRK00294 hscB co-chaperone Hsc 98.8 3E-08 7.7E-13 79.8 8.1 67 1-67 1-74 (173)
39 PRK01773 hscB co-chaperone Hsc 98.7 4.6E-08 1.2E-12 78.5 7.9 64 4-67 2-72 (173)
40 KOG0568 consensus 98.5 2E-07 5.2E-12 73.8 5.3 55 4-59 47-102 (342)
41 PTZ00037 DnaJ_C chaperone prot 98.2 2.3E-06 5.9E-11 66.2 5.3 45 219-263 297-344 (422)
42 PRK10266 curved DNA-binding pr 98.1 9.4E-06 2.4E-10 61.8 7.0 40 300-339 159-198 (306)
43 COG1076 DjlA DnaJ-domain-conta 97.6 6.8E-05 1.7E-09 55.7 3.8 62 7-68 4-72 (174)
44 KOG0723 consensus 97.6 0.00014 3.7E-09 53.3 5.2 56 1-60 53-108 (112)
45 COG1107 Archaea-specific RecJ- 97.5 3.7E-05 9.5E-10 57.5 1.9 55 309-370 259-314 (715)
46 pfam01556 DnaJ_C DnaJ C termin 97.4 0.00016 4E-09 53.1 3.8 77 120-265 15-92 (101)
47 KOG0712 consensus 97.0 0.00069 1.8E-08 48.5 3.5 11 19-29 45-55 (337)
48 TIGR01213 TIGR01213 conserved 96.9 0.00042 1.1E-08 50.0 1.7 68 178-245 201-270 (450)
49 KOG0431 consensus 96.5 0.0031 8E-08 43.7 4.0 16 281-296 362-377 (453)
50 KOG2813 consensus 96.5 0.0019 4.9E-08 45.3 2.5 29 193-224 247-275 (406)
51 COG1076 DjlA DnaJ-domain-conta 96.4 0.0043 1.1E-07 42.7 4.1 54 4-57 113-173 (174)
52 KOG3192 consensus 96.1 0.011 2.8E-07 39.8 4.8 65 4-68 8-79 (168)
53 COG1107 Archaea-specific RecJ- 95.9 0.008 2E-07 40.8 3.4 64 153-217 4-80 (715)
54 TIGR02642 phage_xxxx uncharact 95.8 0.0042 1.1E-07 42.9 1.5 32 151-182 182-213 (270)
55 KOG2813 consensus 94.8 0.016 4.1E-07 38.7 1.8 59 151-218 198-258 (406)
56 KOG0724 consensus 94.4 0.02 5.2E-07 37.9 1.7 54 15-68 3-60 (335)
57 TIGR00714 hscB Fe-S protein as 94.2 0.09 2.3E-06 33.3 4.6 54 16-69 3-61 (159)
58 TIGR02642 phage_xxxx uncharact 93.8 0.017 4.3E-07 38.5 0.3 44 17-60 61-104 (270)
59 pfam00684 DnaJ_CXXCXGXG DnaJ c 92.9 0.069 1.8E-06 34.1 2.3 47 166-218 9-67 (79)
60 PRK00349 uvrA excinuclease ABC 91.0 0.11 2.7E-06 32.8 1.4 15 369-383 706-720 (944)
61 PRK00635 excinuclease ABC subu 90.1 0.15 3.8E-06 31.7 1.5 15 369-383 1575-1589(1809)
62 TIGR00630 uvra excinuclease AB 89.3 0.15 3.9E-06 31.6 1.1 38 186-225 760-809 (956)
63 pfam11833 DUF3353 Protein of u 89.2 1.1 2.8E-05 25.4 5.4 38 13-58 1-38 (193)
64 TIGR01213 TIGR01213 conserved 86.0 0.33 8.3E-06 29.3 1.1 67 254-322 324-396 (450)
65 cd03031 GRX_GRX_like Glutaredo 85.6 0.77 2E-05 26.6 2.9 40 134-182 85-124 (147)
66 KOG2824 consensus 85.1 0.7 1.8E-05 26.9 2.5 15 168-182 240-254 (281)
67 TIGR02166 dmsA_ynfE anaerobic 84.4 0.094 2.4E-06 33.1 -2.2 47 24-73 99-152 (849)
68 COG0178 UvrA Excinuclease ATPa 84.4 0.49 1.2E-05 28.0 1.4 14 369-382 698-711 (935)
69 KOG2824 consensus 84.4 0.91 2.3E-05 26.1 2.8 37 169-217 230-274 (281)
70 KOG0714 consensus 79.5 0.49 1.3E-05 28.0 -0.0 54 4-70 98-151 (306)
71 PRK00349 uvrA excinuclease ABC 79.1 0.89 2.3E-05 26.1 1.2 11 334-344 625-635 (944)
72 COG1198 PriA Primosomal protei 78.9 1.3 3.3E-05 24.9 2.0 53 148-214 432-484 (730)
73 cd01801 Tsc13_N Tsc13_N N-te 77.6 0.64 1.6E-05 27.2 0.1 33 5-37 11-44 (77)
74 PRK00635 excinuclease ABC subu 77.3 1 2.6E-05 25.7 1.0 14 369-382 688-701 (1809)
75 PRK05580 primosome assembly pr 74.0 2 5.2E-05 23.6 1.9 53 148-214 401-453 (699)
76 PRK04023 DNA polymerase II lar 71.6 2.7 7E-05 22.6 2.1 64 135-216 617-681 (1128)
77 TIGR00354 polC DNA polymerase 69.1 3.5 8.8E-05 21.9 2.1 47 289-344 796-848 (1173)
78 TIGR02729 Obg_CgtA GTP-binding 66.2 9.7 0.00025 18.7 3.9 45 231-280 108-155 (296)
79 PRK01271 4-oxalocrotonate taut 64.7 6.7 0.00017 19.8 2.9 20 336-355 3-23 (75)
80 TIGR01562 FdhE formate dehydro 64.6 3.4 8.6E-05 22.0 1.4 48 169-216 189-239 (312)
81 TIGR00757 RNaseEG ribonuclease 64.0 2.8 7E-05 22.6 0.8 50 13-70 204-256 (464)
82 PRK03564 formate dehydrogenase 62.7 6.4 0.00016 20.0 2.5 51 164-214 183-235 (307)
83 pfam07092 DUF1356 Protein of u 62.2 5.7 0.00014 20.4 2.1 22 165-186 28-49 (231)
84 KOG2724 consensus 62.0 10 0.00026 18.5 3.4 84 254-338 370-455 (487)
85 pfam03656 Pam16 Pam16. The Pam 60.8 8.9 0.00023 18.9 3.0 30 7-36 61-90 (127)
86 PRK00488 pheS phenylalanyl-tRN 59.4 5.3 0.00013 20.6 1.6 57 12-68 18-81 (338)
87 PRK12336 translation initiatio 59.1 14 0.00036 17.5 4.1 12 49-60 6-17 (201)
88 TIGR01139 cysK cysteine syntha 56.1 15 0.00038 17.3 3.4 45 336-380 84-129 (312)
89 cd02641 R3H_Smubp-2_like R3H d 56.0 14 0.00036 17.5 3.3 28 338-365 19-46 (60)
90 pfam03367 zf-ZPR1 ZPR1 zinc-fi 54.2 15 0.0004 17.2 3.3 41 273-323 65-105 (160)
91 KOG2217 consensus 51.8 18 0.00047 16.7 3.9 19 331-349 613-631 (705)
92 KOG0956 consensus 51.2 13 0.00034 17.7 2.5 17 255-271 518-534 (900)
93 smart00709 Zpr1 Duplicated dom 51.1 16 0.00042 17.1 3.0 29 289-322 75-103 (160)
94 COG0536 Obg Predicted GTPase [ 47.9 21 0.00054 16.3 3.8 37 231-272 109-145 (369)
95 cd02640 R3H_NRF R3H domain of 47.6 21 0.00054 16.2 3.2 28 337-364 18-45 (60)
96 KOG1885 consensus 46.9 17 0.00044 16.9 2.6 42 336-377 384-430 (560)
97 pfam03589 Antiterm Antitermina 45.8 9.6 0.00025 18.7 1.1 35 169-203 6-44 (95)
98 pfam00591 Glycos_transf_3 Glyc 45.4 16 0.00041 17.1 2.2 31 4-34 50-86 (254)
99 pfam04216 FdhE Protein involve 45.1 21 0.00052 16.4 2.7 48 168-215 166-215 (283)
100 pfam04053 Coatomer_WDAD Coatom 45.0 13 0.00034 17.7 1.8 22 222-243 188-209 (435)
101 pfam12434 Malate_DH Malate deh 44.0 20 0.00051 16.4 2.5 16 18-33 10-25 (28)
102 TIGR00873 gnd 6-phosphoglucona 43.8 11 0.00029 18.2 1.2 12 47-58 195-206 (480)
103 PRK05582 DNA topoisomerase I; 43.5 14 0.00036 17.5 1.7 21 6-26 93-122 (692)
104 pfam02319 E2F_TDP E2F/DP famil 42.5 15 0.00039 17.3 1.7 44 15-69 3-46 (67)
105 PRK12296 obgE GTPase ObgE; Rev 42.1 26 0.00065 15.7 3.6 15 118-132 78-92 (495)
106 pfam09332 Mcm10 Mcm10 replicat 42.1 26 0.00065 15.7 3.0 81 150-242 253-339 (346)
107 PRK07220 DNA topoisomerase I; 41.3 22 0.00057 16.1 2.4 19 342-362 466-484 (740)
108 pfam09538 FYDLN_acid Protein o 40.9 15 0.00038 17.3 1.5 28 148-175 6-33 (104)
109 PRK08620 DNA topoisomerase III 40.6 18 0.00045 16.8 1.8 13 368-380 577-589 (726)
110 PRK11712 ribonuclease G; Provi 40.1 9.3 0.00024 18.8 0.3 24 205-228 402-425 (489)
111 pfam03803 Scramblase Scramblas 39.6 28 0.00071 15.4 2.8 21 336-356 192-212 (223)
112 TIGR02289 M3_not_pepF oligoend 39.5 28 0.00071 15.4 3.0 123 223-361 318-450 (553)
113 cd07356 HN_L-whirlin_R1_like F 39.1 28 0.00072 15.3 4.3 40 23-70 21-61 (78)
114 COG0301 ThiI Thiamine biosynth 38.8 29 0.00073 15.3 2.8 17 123-139 142-158 (383)
115 KOG1912 consensus 37.9 30 0.00075 15.2 3.2 20 271-290 692-711 (1062)
116 cd02639 R3H_RRM R3H domain of 37.1 30 0.00077 15.1 3.7 30 336-365 17-46 (60)
117 PRK10811 rne ribonuclease E; R 36.5 12 0.00031 18.0 0.4 18 15-32 174-191 (1063)
118 pfam01018 GTP1_OBG GTP1/OBG. T 36.2 31 0.0008 15.0 3.9 14 254-267 125-138 (156)
119 cd06007 R3H_DEXH_helicase R3H 36.1 31 0.0008 15.0 4.0 28 338-365 18-45 (59)
120 TIGR00398 metG methionyl-tRNA 36.0 25 0.00064 15.7 2.0 94 262-375 296-395 (573)
121 pfam09862 DUF2089 Protein of u 35.3 21 0.00053 16.3 1.5 19 194-212 1-19 (113)
122 smart00143 PI3K_p85B PI3-kinas 34.7 32 0.00081 15.0 2.3 54 9-64 3-59 (78)
123 TIGR02892 spore_yabP sporulati 34.5 33 0.00085 14.8 4.6 71 289-375 15-86 (88)
124 KOG0049 consensus 34.1 34 0.00086 14.8 3.7 46 12-60 230-277 (939)
125 COG5435 Uncharacterized conser 34.0 34 0.00086 14.8 5.1 32 328-359 107-138 (147)
126 cd04278 ZnMc_MMP Zinc-dependen 33.7 33 0.00083 14.9 2.3 39 6-51 8-46 (157)
127 PRK12298 obgE GTPase ObgE; Rev 33.1 35 0.00089 14.7 4.3 33 232-269 110-142 (380)
128 cd02769 MopB_DMSOR-BSOR-TMAOR 32.9 6.6 0.00017 19.9 -1.4 49 23-74 35-101 (609)
129 pfam09606 Med15 ARC105 or Med1 32.2 28 0.00071 15.4 1.7 48 21-68 508-560 (768)
130 TIGR01793 cit_synth_euk citrat 31.1 32 0.00081 15.0 1.9 22 222-245 300-321 (430)
131 pfam02192 PI3K_p85B PI3-kinase 31.0 38 0.00096 14.5 2.4 25 8-32 2-26 (78)
132 PRK05978 hypothetical protein; 30.8 15 0.00037 17.4 0.1 25 170-198 36-60 (149)
133 KOG3803 consensus 30.2 20 0.00051 16.4 0.7 10 195-204 743-752 (968)
134 pfam03444 DUF293 Domain of unk 30.1 39 0.00099 14.3 2.5 24 345-368 2-25 (79)
135 PTZ00007 (NAP-L) nucleosome as 29.9 39 0.001 14.3 2.3 19 50-68 79-97 (360)
136 PRK00564 hypA hydrogenase nick 29.5 35 0.0009 14.6 1.9 30 149-178 69-98 (117)
137 TIGR02533 type_II_gspE general 29.1 15 0.00038 17.3 -0.1 40 16-63 36-77 (495)
138 cd01802 AN1_N AN1 (also known 28.9 41 0.001 14.2 3.1 41 262-307 5-46 (103)
139 TIGR01246 dapE_proteo succinyl 28.8 36 0.00091 14.6 1.8 31 330-360 251-282 (383)
140 pfam11983 DUF3484 Domain of un 28.5 41 0.0011 14.2 2.4 21 364-384 50-70 (70)
141 PRK03681 hypA hydrogenase nick 28.2 37 0.00094 14.5 1.8 11 149-159 68-78 (114)
142 PRK08938 DNA topoisomerase I; 28.2 37 0.00094 14.5 1.8 21 6-26 95-124 (692)
143 PRK12297 obgE GTPase ObgE; Rev 28.2 42 0.0011 14.1 3.9 18 116-133 74-91 (429)
144 KOG2577 consensus 27.8 22 0.00055 16.2 0.5 19 50-69 94-112 (354)
145 CHL00175 minD septum-site dete 27.4 43 0.0011 14.0 3.0 45 336-380 229-276 (279)
146 TIGR01534 GAPDH-I glyceraldehy 27.1 44 0.0011 14.0 2.1 90 227-351 197-291 (366)
147 PRK10927 essential cell divisi 27.1 42 0.0011 14.1 1.9 12 345-356 114-125 (319)
148 TIGR01674 phage_lambda_G phage 26.9 44 0.0011 14.0 4.7 38 14-51 45-86 (138)
149 KOG1957 consensus 26.6 36 0.00091 14.6 1.5 21 15-38 147-167 (555)
150 pfam04829 DUF638 Possible hema 26.4 43 0.0011 14.1 1.8 19 342-360 2-20 (56)
151 pfam12057 DUF3538 Domain of un 26.0 40 0.001 14.3 1.6 13 46-58 53-65 (118)
152 KOG0276 consensus 26.0 46 0.0012 13.9 2.1 24 251-274 452-475 (794)
153 pfam02963 EcoRI Restriction en 25.5 33 0.00084 14.9 1.1 37 289-325 161-198 (257)
154 TIGR00496 frr ribosome recycli 25.4 30 0.00075 15.2 0.9 27 284-310 72-99 (177)
155 KOG2653 consensus 25.2 31 0.00078 15.1 0.9 12 47-58 198-209 (487)
156 PRK06319 DNA topoisomerase I/S 25.1 40 0.001 14.3 1.5 37 345-381 807-844 (864)
157 COG2804 PulE Type II secretory 24.9 26 0.00065 15.7 0.5 45 252-297 301-360 (500)
158 PRK13654 magnesium-protoporphy 24.5 48 0.0012 13.7 3.5 12 59-70 75-86 (351)
159 TIGR03636 L23_arch archaeal ri 24.4 49 0.0012 13.7 2.3 18 11-28 20-37 (77)
160 COG3058 FdhE Uncharacterized p 24.3 8.5 0.00022 19.1 -2.1 48 168-215 185-235 (308)
161 KOG3442 consensus 24.3 49 0.0012 13.6 2.9 16 10-25 65-80 (132)
162 TIGR00100 hypA hydrogenase nic 24.2 36 0.00091 14.6 1.1 25 139-163 64-90 (128)
163 pfam02520 DUF148 Domain of unk 24.1 49 0.0013 13.6 2.7 29 3-32 4-32 (114)
164 cd05175 PI3Kc_IA_alpha Phospho 23.7 50 0.0013 13.6 4.3 22 43-64 10-31 (366)
165 PRK08136 glycosyl transferase 23.6 50 0.0013 13.6 2.7 29 1-29 1-33 (316)
166 pfam01870 Hjc Archaeal hollida 23.5 51 0.0013 13.5 5.7 48 313-360 16-71 (93)
167 smart00276 GLECT Galectin. Gal 23.2 51 0.0013 13.5 4.1 20 224-243 2-21 (128)
168 PRK09665 galactitol-specific P 22.8 52 0.0013 13.5 5.5 81 281-361 35-121 (150)
169 TIGR01418 PEP_synth phosphoeno 22.7 45 0.0011 13.9 1.4 14 48-61 98-111 (877)
170 pfam11239 DUF3040 Protein of u 22.7 52 0.0013 13.4 2.2 13 345-357 3-15 (82)
171 pfam06748 DUF1217 Protein of u 22.4 53 0.0013 13.4 3.1 51 15-67 57-113 (150)
172 TIGR00345 arsA arsenite-activa 22.3 53 0.0014 13.4 1.9 30 335-364 261-302 (330)
173 COG1974 LexA SOS-response tran 22.3 53 0.0014 13.4 3.8 46 227-277 123-171 (201)
174 PRK10613 hypothetical protein; 21.1 31 0.0008 15.0 0.3 15 53-67 48-62 (74)
175 pfam10769 DUF2594 Protein of u 20.9 32 0.00081 15.0 0.3 26 42-67 37-62 (74)
176 PRK02935 hypothetical protein; 20.8 41 0.001 14.2 0.9 25 189-213 67-93 (117)
177 COG0796 MurI Glutamate racemas 20.7 50 0.0013 13.6 1.3 14 345-358 243-256 (269)
178 PRK06835 DNA replication prote 20.6 32 0.00081 15.0 0.3 14 18-31 6-19 (330)
179 COG1592 Rubrerythrin [Energy p 20.4 50 0.0013 13.6 1.2 24 151-176 134-157 (166)
180 pfam07709 SRR Seven Residue Re 20.4 42 0.0011 14.1 0.8 16 46-61 2-17 (26)
181 PRK00188 trpD anthranilate pho 20.2 58 0.0015 13.1 2.4 29 2-30 2-30 (339)
182 pfam11023 DUF2614 Protein of u 20.2 43 0.0011 14.0 0.9 25 189-213 67-93 (114)
No 1
>TIGR02349 DnaJ_bact chaperone protein DnaJ; InterPro: IPR012724 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold . DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation . Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. DnaJ comprises a 70-residue N-terminal domain (the J-domain); a 30-residue glycine-rich region (the G-domain); a central domain containing 4 repeats of a CxxCxGxG motif (the CRR-domain); and a 120-170 residue C-terminal region. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins , either together or separately. This entry mostly consists of bacterial forms of DnaJ. The three components of the DnaK-DnaJ-GrpE system are typically encoded by consecutive genes. DnaJ homologues occur in many genomes, typically not encoded near DnaK and GrpE-like genes. Most such proteins are not included in this family, though some chloroplast homologues are included; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0009408 response to heat.
Probab=100.00 E-value=0 Score=873.29 Aligned_cols=355 Identities=50% Similarity=0.922 Sum_probs=326.1
Q ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC---
Q ss_conf 52487187998899999999999999975699887-98799999999999876099899999877248765314555---
Q gi|254780638|r 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRN-DPEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALEYGAQS--- 80 (384)
Q Consensus 5 DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~-d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~~~~~~~~--- 80 (384)
|||+||||||+||++||||||||||||||||+|++ ||+||||||||||||||||||+||++|||||++++..++.+
T Consensus 1 DYYeiLGVsK~A~~~EIKKAYRkLA~kYHPD~Nkgn~~~AEeKFKEi~EAYeVLSD~~KRa~YDqfGh~g~~g~~~gg~R 80 (386)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKGNDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGFR 80 (386)
T ss_pred CCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 95156242799898999999998888517888888883756765788877530689789987413436551678556515
Q ss_pred --CCC--CCEEC------CCCCCCC-----CCCCCCCCCCCCCC----CCCCCC-CCCCCCCCCCCCCCCCCCCCCHHCC
Q ss_conf --665--21001------4432222-----22334443561013----760344-4222212222211232221000001
Q gi|254780638|r 81 --QGA--GGFGA------GMYGNSD-----FSELFEGIFGGIMG----SGRSYK-RSSSTGEAGADLRYNLEISLEEAFS 140 (384)
Q Consensus 81 --~~~--~~~~~------~~~~~~~-----~~d~f~~~f~~~~~----~~~~~~-~~~~~~~~~~d~~~~~~islee~~~ 140 (384)
..+ .++.. +.....+ |.|||++||++.++ +++..+ +.++.++++.|++++|.|||+|+++
T Consensus 81 GGg~~~f~~f~~~~~~Fggg~~F~~~~~~~fgdiF~~fFGg~~gsF~g~~r~~~~~~~~~~~~G~Dl~~~l~l~f~EAv~ 160 (386)
T TIGR02349 81 GGGGGGFGGFDIFFGGFGGGGFFGDFTGSFFGDIFGDFFGGGGGSFAGSGRRKRRANRSGPRRGSDLRYDLELTFEEAVF 160 (386)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEHEEE
T ss_conf 77887877542330024467678876677641011556078743010178887656766675577538999887003331
Q ss_pred CCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---EEEEEEEECCCCCCCCEEEECCCCCCCCCCEE
Q ss_conf 355444554431000234322578854210355310112100110---01246861666565546983541200112100
Q gi|254780638|r 141 GKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQ---SFFSIERACSTCRGSGQIIPHPCSKCHGQGRV 217 (384)
Q Consensus 141 G~~~~i~~~~~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~~---~~~~~~~~C~~C~G~g~i~~~~c~~C~G~g~~ 217 (384)
|++++|.+++...|++|+|+||+++..+.+|+.|+|+|+|.+.++ ++|+++++|+.|+|.|+|++++|+.|+|.|++
T Consensus 161 G~eK~i~~~~~~~C~~C~GsGA~~g~~~~tC~~C~G~Gqv~~~~~t~fG~f~~~~tC~~C~G~G~ii~~~C~~C~G~G~~ 240 (386)
T TIGR02349 161 GVEKEIEIPRLESCETCHGSGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRV 240 (386)
T ss_pred CEEEEEEEEEEEECCCCCCCCCCCCCCCEECCCCCCEEEEEEECCCEEEEEEEEEECCCCCCEEEEEECCCCCCCCCEEE
T ss_conf 21788886256626888761110888854787789758999971406589998587788584238963368998874069
Q ss_pred CCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCEEEEEECHHHHCCCCEEEEECCC
Q ss_conf 01110000011001148501203677656788416641575310346842864148469998466651354248851678
Q gi|254780638|r 218 SEEKLLSVNVPPGVDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLD 297 (384)
Q Consensus 218 ~~~~~~~I~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~~~~h~~f~r~g~dL~~~~~I~l~eal~G~~~~i~tld 297 (384)
+++++++|+|||||.+|++||++|+|+.+.+|+++|||||+|.|+||++|+|+|+|||++++||+.+|+||.+++||||+
T Consensus 241 ~~~~~~~v~IPaGV~~G~~lrv~G~G~aG~~GG~~GDLYv~i~Vk~h~~F~R~G~Dl~~~~pisf~~AiLG~~ieVPTl~ 320 (386)
T TIGR02349 241 KERKTISVKIPAGVDTGQRLRVSGEGEAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLD 320 (386)
T ss_pred EEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCEEECCCCEEEEECCCHHHEEECCEEEEECCC
T ss_conf 88889999617998889888876777567886888862799998018851663882799833782315627776861567
Q ss_pred CCCCCEEECCCCCCCCEEEECCEECCCCCCC---CCCCEEEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 8823101168517788789888102006898---8652799999992989999999999999987
Q gi|254780638|r 298 ATHSRVTIPEGTQTGKQFRLKGKGMPVINSG---RKGDLYVQVQVETPQKLNKRQRELLEEFEQI 359 (384)
Q Consensus 298 G~~i~i~i~~~~~~~~~~~i~g~G~p~~~~~---~rGdl~i~~~v~~P~~Ls~~qk~ll~~l~~~ 359 (384)
|..+.|+||++||+|+++||+|+|||..++. .||||||+++|.+|++||++||+||++|+++
T Consensus 321 G~~~~lkIP~GTq~G~~frl~gkG~p~~~~~~Fk~~GDl~v~V~v~~P~~Ls~~q~~lLe~l~~~ 385 (386)
T TIGR02349 321 GGDVKLKIPAGTQSGTVFRLKGKGVPRLRGSNFKGRGDLLVTVKVETPKNLSKEQKELLEELAEA 385 (386)
T ss_pred CCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 87579972788888868997887501468876763366699999985898788899999999732
No 2
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=0 Score=786.50 Aligned_cols=371 Identities=50% Similarity=0.954 Sum_probs=338.4
Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 98745248718799889999999999999997569988798799999999999876099899999877248765314555
Q gi|254780638|r 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALEYGAQS 80 (384)
Q Consensus 1 ~~~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~~~~~~~~ 80 (384)
|+++|||+||||+++||++||||||||||||||||||++|++|++|||||+|||||||||+||++||+||+++++.+..+
T Consensus 1 ma~kDyY~iLGV~~~As~~eIKkAYRkLA~k~HPDkn~~d~~Ae~kFkeI~eAYevLsD~~KR~~YD~~G~~~~~~~~~~ 80 (376)
T PRK10767 1 MAKQDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMG 80 (376)
T ss_pred CCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99788188719899979999999999999985889899987999999999999998689999999875166110247878
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 66521001443222222334443561013760344422221222221123222100000135544455443100023432
Q gi|254780638|r 81 QGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSSTGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGS 160 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~d~f~~~f~~~~~~~~~~~~~~~~~~~~~d~~~~~~islee~~~G~~~~i~~~~~~~C~~C~G~ 160 (384)
.++ +.+..++.++|+++|+++++++.. .+...++.++.+.+.++|+++|.|+.+.+.+.+...|+.|+|+
T Consensus 81 ~~~------~~~~~~~~d~f~~~f~~~fg~~~~----~~~~~~g~d~~~~~~~slee~~~G~~~~i~~~~~~~C~~C~G~ 150 (376)
T PRK10767 81 GGG------FGGGADFSDIFGDVFGDIFGGGRG----RQRAARGADLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGS 150 (376)
T ss_pred CCC------CCCCCCHHHHHHHHCCCCCCCCCC----CCCCCCCCCCEEEEECCHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 888------877877001112211455678888----9988788874366430789973687654246666544667787
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCEECCCCCCCHHHHHCCCCCCCEEEC
Q ss_conf 25788542103553101121001100124686166656554698354120011210001110000011001148501203
Q gi|254780638|r 161 GAKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLS 240 (384)
Q Consensus 161 g~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~g~i~~~~c~~C~G~g~~~~~~~~~I~Ip~G~~~G~~i~~~ 240 (384)
|++++..+..|+.|+|+|.++ ..+++++++++|+.|+|+|++++++|..|+|.|++.++++++|+|||||++|++|+|+
T Consensus 151 G~~~~~~~~~C~~c~G~g~v~-~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~Ir~~ 229 (376)
T PRK10767 151 GAKPGTQPQTCPTCHGSGQVQ-MRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVEKSKTLSVKIPAGVDTGDRIRLA 229 (376)
T ss_pred CCCCCCCCCCCCCCCCCCCEE-EECCCEEEEEECCCCCCCCEEECCCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEC
T ss_conf 767999886677667866466-6415168887368766575693266664478537865447998737987589876725
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCEEEEEECHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCEEEECCE
Q ss_conf 67765678841664157531034684286414846999846665135424885167888231011685177887898881
Q gi|254780638|r 241 GEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEGTQTGKQFRLKGK 320 (384)
Q Consensus 241 g~G~~~~~~~~~GDl~i~i~~~~h~~f~r~g~dL~~~~~I~l~eal~G~~~~i~tldG~~i~i~i~~~~~~~~~~~i~g~ 320 (384)
|+|++++.+.++|||+|+|++++|+.|+|+|+|||++++|||+|||||++++|+||||+ +.|+||++++||+++||+|+
T Consensus 230 G~G~~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-v~l~ip~gt~~G~~lri~G~ 308 (376)
T PRK10767 230 GEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGR-VKLKVPGETQTGKLFRMRGK 308 (376)
T ss_pred CCCCCCCCCCCCCEEEEEEEECCCCCEEEECCEEEEECCCCHHHHHCCCEEEEECCCCC-EEEEECCCCCCCEEEEECCC
T ss_conf 88667989998860899999757885599777778924377767746975895358960-88977996468958998998
Q ss_pred ECCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCC----CCCCCCCCHHHHHHHHHHHHC
Q ss_conf 020068988652799999992989999999999999987288----888100588999999887505
Q gi|254780638|r 321 GMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQISSQ----DNNPQSTGFFARMKDFFDSLK 383 (384)
Q Consensus 321 G~p~~~~~~rGdl~i~~~v~~P~~Ls~~qk~ll~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 383 (384)
|||..+++.+|||||+|+|+||++||++||+||++|++.... ...|+.++||+|||++||.|.
T Consensus 309 Gmp~~~~~~~GDl~V~~~V~~P~~Ls~~Qk~ll~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (376)
T PRK10767 309 GVKSVRGGAQGDLLCRVVVETPVGLNEKQKQLLQELQESFGGPTGEKNSPRSKSFFDGVKKFFDDLT 375 (376)
T ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 9898997997788999999899999999999999999974676667678544788999999987511
No 3
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=0 Score=775.51 Aligned_cols=370 Identities=55% Similarity=0.999 Sum_probs=335.5
Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 98745248718799889999999999999997569988798799999999999876099899999877248765314555
Q gi|254780638|r 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALEYGAQS 80 (384)
Q Consensus 1 ~~~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~~~~~~~~ 80 (384)
|+++|||+||||+++||++||||||||||||||||+|+++++|+||||||+|||||||||+||++|||||+++++.+..+
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRKLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g 80 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG 80 (371)
T ss_pred CCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCC
T ss_conf 97654364209888999999999999999986889898987799999999999987478878777642376444467767
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 66521001443222222334443561013760344422221222221123222100000135544455443100023432
Q gi|254780638|r 81 QGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSSTGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGS 160 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~d~f~~~f~~~~~~~~~~~~~~~~~~~~~d~~~~~~islee~~~G~~~~i~~~~~~~C~~C~G~ 160 (384)
.. +++.++. +|.|||++||++..+ .++.+....+++|+...+.|+|+|+|.|+++++.+++...|+.|+|+
T Consensus 81 g~----g~~~fgg-~~~DIF~~~FgGg~~----~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~Gs 151 (371)
T COG0484 81 GF----GFGGFGG-DFGDIFEDFFGGGGG----GRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGS 151 (371)
T ss_pred CC----CCCCCCC-CHHHHHHHHHCCCCC----CCCCCCCCCCCCCEEEEEEEEHHHHCCCCEEEEECCEEEECCCCCCC
T ss_conf 77----7677777-777888886267776----66788886647865899775734521673346744523678867898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC-EEEEEEEECCCCCCCCEEEECCCCCCCCCCEECCCCCCCHHHHHCCCCCCCEEE
Q ss_conf 2578854210355310112100110-012468616665655469835412001121000111000001100114850120
Q gi|254780638|r 161 GAKPGTNPMDCNICNGSGRVYTTAQ-SFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRL 239 (384)
Q Consensus 161 g~~~~~~~~~C~~C~G~G~~~~~~~-~~~~~~~~C~~C~G~g~i~~~~c~~C~G~g~~~~~~~~~I~Ip~G~~~G~~i~~ 239 (384)
|++++..+.+|+.|+|+|.+.+.++ ++++++++|+.|+|+|++++++|+.|+|.|++.+.++++|+||||+.+|++|++
T Consensus 152 Gak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~ 231 (371)
T COG0484 152 GAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRL 231 (371)
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEE
T ss_conf 88999999857887881749999755589999989997661238987787787987575403799978999866878998
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCEEEEEECHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCEEEECC
Q ss_conf 36776567884166415753103468428641484699984666513542488516788823101168517788789888
Q gi|254780638|r 240 SGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEGTQTGKQFRLKG 319 (384)
Q Consensus 240 ~g~G~~~~~~~~~GDl~i~i~~~~h~~f~r~g~dL~~~~~I~l~eal~G~~~~i~tldG~~i~i~i~~~~~~~~~~~i~g 319 (384)
+|+|+++++++++|||+|+|.+++|+.|+|+|+|||++++|++.+|+||+++.||||+|+ +.|+||+++|+|..++|+|
T Consensus 232 ~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~-~~l~ip~Gtq~G~~~rl~g 310 (371)
T COG0484 232 SGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGR-VKLKIPAGTQTGEVFRLRG 310 (371)
T ss_pred ECCCCCCCCCCCCCCEEEEEEEECCCCEEECCCCEEECCCCCHHHHHCCCEEEEEECCCC-EEEECCCCCCCCCEEEECC
T ss_conf 257653778999765899999613787387788568603248999844987998763787-7886289974686799768
Q ss_pred EECCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 10200689886527999999929899999999999999872888881005889999998875
Q gi|254780638|r 320 KGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQISSQDNNPQSTGFFARMKDFFDS 381 (384)
Q Consensus 320 ~G~p~~~~~~rGdl~i~~~v~~P~~Ls~~qk~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (384)
+|||..++..+|||||++.|++|++||.+|++||++|++...+ ......+||.|+|+||+.
T Consensus 311 kG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL~~~~~~~~~-~~~~~~~~~~k~k~~f~~ 371 (371)
T COG0484 311 KGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLEEFAKSLGE-GPEQSPGFFDKLKNFFKG 371 (371)
T ss_pred CCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHCCC
T ss_conf 9735468887588899999976887999999999999876355-665670266776764159
No 4
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=0 Score=686.01 Aligned_cols=330 Identities=35% Similarity=0.661 Sum_probs=294.3
Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 98745248718799889999999999999997569988798799999999999876099899999877248765314555
Q gi|254780638|r 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALEYGAQS 80 (384)
Q Consensus 1 ~~~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~~~~~~~~ 80 (384)
|++++||+||||+++||++||||||||||+|||||||+ | +||||||||||||||||+||++||+||++++..+..
T Consensus 23 v~~t~yY~iLGV~~~As~~EIKKAYRKLA~KyHPDKn~-d---~EKFKeIseAYEVLSDpeKR~~YD~~G~~g~~~~~~- 97 (422)
T PTZ00037 23 VDNEKLYEVLNLSKDCTESEIKKAYRKLAIKHHPDKGG-D---PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGEQ- 97 (422)
T ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCC-C---HHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHCCCCC-
T ss_conf 87676568659899989999999999999984999898-8---799999999998758998999874455445326888-
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 66521001443222222334443561013760344422221222221123222100000135544455443100023432
Q gi|254780638|r 81 QGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSSTGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGS 160 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~d~f~~~f~~~~~~~~~~~~~~~~~~~~~d~~~~~~islee~~~G~~~~i~~~~~~~C~~C~G~ 160 (384)
..++.|+|+.||++... .....++.|+...+.++|+++|.|+++++.+.+.+.|..|.|.
T Consensus 98 ------------~~~~~diF~~ffggg~~--------~~~~~~g~di~~~l~vsle~~y~G~~~~~~~~r~~~C~~C~G~ 157 (422)
T PTZ00037 98 ------------PADASDLFDLIFGGGRK--------PGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDIICANCEGH 157 (422)
T ss_pred ------------CCCHHHHHHHHCCCCCC--------CCCCCCCCCCEEEEEECHHHHCCCCCEEEECCCCCCCCCCCCC
T ss_conf ------------88813455631478889--------9999898874334010589923786205736777415867667
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC---EEEEEEEECCCCCCCCEEE--ECCCCCCCCCCEECCCCCCCHHHHHCCCCCC
Q ss_conf 2578854210355310112100110---0124686166656554698--3541200112100011100000110011485
Q gi|254780638|r 161 GAKPGTNPMDCNICNGSGRVYTTAQ---SFFSIERACSTCRGSGQII--PHPCSKCHGQGRVSEEKLLSVNVPPGVDDGT 235 (384)
Q Consensus 161 g~~~~~~~~~C~~C~G~G~~~~~~~---~~~~~~~~C~~C~G~g~i~--~~~c~~C~G~g~~~~~~~~~I~Ip~G~~~G~ 235 (384)
|+.. .....|+.|+|+|.....++ +..+++.+|+.|+|+|+++ .++|..|.|.+++.++++++|+|||||++|+
T Consensus 158 G~~~-~~~~~C~~C~G~G~~~~~r~~gp~i~q~~~~C~~C~G~Gk~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~dG~ 236 (422)
T PTZ00037 158 GGPK-DAFVDCKLCNGRGIRVQIRQMGSMIHQTQSTCNSCNGQGKTINESKKCKNCSGKGVKKTRKILEVNIDKGVPNQH 236 (422)
T ss_pred CCCC-CCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCC
T ss_conf 8898-888657876898852456504870477763047646661484356765468997217554589994789975898
Q ss_pred CEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCEEEEEECHHHHCCCCEEEEECCCCCCCCEEECCC--CCCCC
Q ss_conf 0120367765678841664157531034684286414846999846665135424885167888231011685--17788
Q gi|254780638|r 236 RIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEG--TQTGK 313 (384)
Q Consensus 236 ~i~~~g~G~~~~~~~~~GDl~i~i~~~~h~~f~r~g~dL~~~~~I~l~eal~G~~~~i~tldG~~i~i~i~~~--~~~~~ 313 (384)
+|+|+|+|++. ++..||||+|+|.+++|+.|+|+|+|||++++|+|.|||||+++.|+||||+.|.|++|++ |+|++
T Consensus 237 kI~~~GeGd~~-pg~~pGDLi~~I~~kpHp~F~R~G~DL~~~~~IsL~eAL~G~~~~v~tLDGr~l~i~~~~g~vi~pg~ 315 (422)
T PTZ00037 237 KITFHGEADEK-PNEIPGNVVFILNEKPHDVFKREGNDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVRPGD 315 (422)
T ss_pred EEECCCCCCCC-CCCCCCCEEEEEEECCCCCCEECCCEEEEEEECCHHHHHCCCEEEEECCCCCEEEEECCCCCEECCCE
T ss_conf 87415876788-99866767999997669983774880799765579997379869953566997898618998478996
Q ss_pred EEEECCEECCCCC-CCCCCCEEEEEEEECCCC--CCHHHHHHHHHHH
Q ss_conf 7898881020068-988652799999992989--9999999999999
Q gi|254780638|r 314 QFRLKGKGMPVIN-SGRKGDLYVQVQVETPQK--LNKRQRELLEEFE 357 (384)
Q Consensus 314 ~~~i~g~G~p~~~-~~~rGdl~i~~~v~~P~~--Ls~~qk~ll~~l~ 357 (384)
+++|+|+|||+.+ ...+|||||+|+|+||++ |+++++++|++|-
T Consensus 316 ~~~i~geGMP~~~~~~~~GdL~I~f~V~FP~~~~~~~~~~~~l~~~l 362 (422)
T PTZ00037 316 IKVITNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKELLKELF 362 (422)
T ss_pred EEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHC
T ss_conf 99966899877899898778899999988998888999999999848
No 5
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=0 Score=598.96 Aligned_cols=302 Identities=32% Similarity=0.577 Sum_probs=252.7
Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 98745248718799889999999999999997569988798799999999999876099899999877248765314555
Q gi|254780638|r 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALEYGAQS 80 (384)
Q Consensus 1 ~~~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~~~~~~~~ 80 (384)
|..+|||+||||+++||++||||||||||||||||+|+ +++||+|||||||||||||||+||++||+||......+...
T Consensus 1 M~~kDyY~vLGV~~~As~~EIKkAYRkLA~kyHPD~n~-d~~AeekFkeI~eAYeVLsD~~KR~~YD~~~~~~~~~~~~~ 79 (306)
T PRK10266 1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNR 79 (306)
T ss_pred CCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 98677088759899989999999999999986879866-92899999999999998689878888611011246876566
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 66521001443222222334443561013760344422221222221123222100000135544455443100023432
Q gi|254780638|r 81 QGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSSTGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGS 160 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~d~f~~~f~~~~~~~~~~~~~~~~~~~~~d~~~~~~islee~~~G~~~~i~~~~~~~C~~C~G~ 160 (384)
.. .......++..+|.|+|++||+..... .......++.++.+.+.++|++++.|+++.+.+.
T Consensus 80 ~~-~~~~~~~~~~~~~~dif~~~fg~~~~~-----~~~~~~~~g~d~~~~~~i~le~~~~g~~~~i~~~----------- 142 (306)
T PRK10266 80 QF-QHGDGQSFNAEDFDDIFSSIFGQHARQ-----SRQRPAARGHDIEIEVAVFLEETLTEHKRTISYN----------- 142 (306)
T ss_pred CC-CCCCCCCCCCCCHHHHHHHCCCCCCCC-----CCCCCCCCCCCCEEEEEEEHHHHCCCCCEEEEEC-----------
T ss_conf 66-678888876541445443004787889-----9989987899845786366899406771499961-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCEECCCCCCCHHHHHCCCCCCCEEEC
Q ss_conf 25788542103553101121001100124686166656554698354120011210001110000011001148501203
Q gi|254780638|r 161 GAKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLS 240 (384)
Q Consensus 161 g~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~g~i~~~~c~~C~G~g~~~~~~~~~I~Ip~G~~~G~~i~~~ 240 (384)
|+.|++.|.+. ....++++|+||||+.+|++|+|+
T Consensus 143 ----------~p~~~~~G~~~-----------------------------------~~~~k~~~v~IP~G~~~G~~i~~~ 177 (306)
T PRK10266 143 ----------LPVYNAFGMIE-----------------------------------QEIPKTLNVKIPAGVGNGQRIRLK 177 (306)
T ss_pred ----------CCEEECCCEEE-----------------------------------EECCCEEEEECCCCCCCCCEEEEE
T ss_conf ----------33571785166-----------------------------------333637988719987789789973
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCEEEEEECHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCEEEECCE
Q ss_conf 67765678841664157531034684286414846999846665135424885167888231011685177887898881
Q gi|254780638|r 241 GEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEGTQTGKQFRLKGK 320 (384)
Q Consensus 241 g~G~~~~~~~~~GDl~i~i~~~~h~~f~r~g~dL~~~~~I~l~eal~G~~~~i~tldG~~i~i~i~~~~~~~~~~~i~g~ 320 (384)
|+|+++..++++|||+|+|++++|+.|+|+|+||+++++|+++|||||+++.|+||||+ +.|+||++++||+++||+|+
T Consensus 178 G~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Is~~eAllG~~v~v~tldG~-v~l~ip~gtq~g~~lrl~g~ 256 (306)
T PRK10266 178 GQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVAPWEAALGAKVTVPTLKES-ILLTIPPGSQAGQRLRIKGK 256 (306)
T ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCEEEECCEEEEEEEECHHHHHCCCEEEEECCCCC-EEEEECCCCCCCCEEEECCC
T ss_conf 58887888896763799999768997189799789999976899516988995289997-89987989899988998499
Q ss_pred ECCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 0200689886527999999929899999999999999872888881005
Q gi|254780638|r 321 GMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQISSQDNNPQST 369 (384)
Q Consensus 321 G~p~~~~~~rGdl~i~~~v~~P~~Ls~~qk~ll~~l~~~~~~~~~~~~~ 369 (384)
|||.. ..+|||||+|+|+||++||++|++||++|+++.. ..+||+.
T Consensus 257 G~~~~--~~~GDL~V~~~v~~P~~ls~~q~~ll~~l~~~~~-~~~pr~~ 302 (306)
T PRK10266 257 GLVSK--KQTGDLYAVLKIVMPPKPDEKTAALWQQLADAQS-SFDPRKD 302 (306)
T ss_pred CCCCC--CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCC-CCCCHHH
T ss_conf 98898--9988889999998799999999999999997535-7891576
No 6
>KOG0712 consensus
Probab=100.00 E-value=0 Score=559.17 Aligned_cols=328 Identities=40% Similarity=0.741 Sum_probs=291.2
Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 98745248718799889999999999999997569988798799999999999876099899999877248765314555
Q gi|254780638|r 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALEYGAQS 80 (384)
Q Consensus 1 ~~~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~~~~~~~~ 80 (384)
|.++.||+||||+++||++|||||||+||+|||||||++ |.||||||++||||||||+||++||+||++++..+.++
T Consensus 1 ~~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~ 77 (337)
T KOG0712 1 VKNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGG 77 (337)
T ss_pred CCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 966562124145877578999999999988728887865---77888888889988649888777776514442036777
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 66521001443222222334443561013760344422221222221123222100000135544455443100023432
Q gi|254780638|r 81 QGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSSTGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGS 160 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~d~f~~~f~~~~~~~~~~~~~~~~~~~~~d~~~~~~islee~~~G~~~~i~~~~~~~C~~C~G~ 160 (384)
.+.++ |++||+ +++.++ +. ..+++|+.+.+.++|+|+|.|.++++.+++...|+.|.|.
T Consensus 78 ~g~~~--------------f~~~F~--~g~~~~--~~---~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~Gs 136 (337)
T KOG0712 78 GGFGG--------------FSQFFG--FGGNGG--RG---RQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGS 136 (337)
T ss_pred CCCCC--------------HHHHCC--CCCCCC--CC---CCCCCCCEEEEEEEHHHHHCCCCCCEECCCCCCCCCCCCC
T ss_conf 78740--------------777516--777676--55---4468872477888887865677553113567137767788
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEE----EEEEECCCCCCCCEEE--ECCCCCCCCCCEECCCCCCCHHHHHCCCCC
Q ss_conf 2578854210355310112100110012----4686166656554698--354120011210001110000011001148
Q gi|254780638|r 161 GAKPGTNPMDCNICNGSGRVYTTAQSFF----SIERACSTCRGSGQII--PHPCSKCHGQGRVSEEKLLSVNVPPGVDDG 234 (384)
Q Consensus 161 g~~~~~~~~~C~~C~G~G~~~~~~~~~~----~~~~~C~~C~G~g~i~--~~~c~~C~G~g~~~~~~~~~I~Ip~G~~~G 234 (384)
|..++..+ .|+.|.|+|...+.+++.. +++.+|..|+|+|.++ ++.|+.|.|.+++.+.+.++|.|++|+.++
T Consensus 137 Ggksg~~~-~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~ 215 (337)
T KOG0712 137 GGKSGSAP-KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHG 215 (337)
T ss_pred CCCCCCCC-CCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHEEECCCCCCCCCC
T ss_conf 99887787-78778998811477642565300224574067885103136665866556131201103412556887656
Q ss_pred CCEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCEEEEEECHHHHCCCCEEEEECCCCCCCCEEECCC--CCCC
Q ss_conf 50120367765678841664157531034684286414846999846665135424885167888231011685--1778
Q gi|254780638|r 235 TRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEG--TQTG 312 (384)
Q Consensus 235 ~~i~~~g~G~~~~~~~~~GDl~i~i~~~~h~~f~r~g~dL~~~~~I~l~eal~G~~~~i~tldG~~i~i~i~~~--~~~~ 312 (384)
++|.+.|++++.+ +..+||++|.|.+++|+.|.|.|+||++..+|+|.||++|+.+.+.||||+.+.+.++++ +.|+
T Consensus 216 ~ki~f~geadea~-g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~ 294 (337)
T KOG0712 216 QKITFKGEADEAP-GTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPG 294 (337)
T ss_pred CEEEEEEEEEECC-CCCCCCEEEEECCCCCCCCEECCCCCCEEEECCHHHCCCCCEEEEECCCCCEEEEECCCCCEECHH
T ss_conf 4123454331157-886764899965345664113366640123103323255651788746895179836898260756
Q ss_pred CEEEECCEECCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 87898881020068988652799999992989999999999999
Q gi|254780638|r 313 KQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEF 356 (384)
Q Consensus 313 ~~~~i~g~G~p~~~~~~rGdl~i~~~v~~P~~Ls~~qk~ll~~l 356 (384)
..++|+|+|||+.+.. +|||||+|.|+||+ |++++..+|+++
T Consensus 295 ~~~~v~~~gmp~~~~~-~g~lyi~~~v~fp~-~~~~~~~~l~~~ 336 (337)
T KOG0712 295 DTKRVEGEGMPIFRNP-KGDLYIKFEVKFPK-LSPSQLKMLEDL 336 (337)
T ss_pred HEEEECCCCCCCCCCC-CCCEEEEEEEECCC-CCHHHHHHHHHH
T ss_conf 7776127886465689-98689999987688-886788888743
No 7
>KOG0713 consensus
Probab=100.00 E-value=0 Score=379.23 Aligned_cols=312 Identities=34% Similarity=0.530 Sum_probs=242.1
Q ss_pred CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 87452487187998899999999999999975699887987999999999998760998999998772487653145556
Q gi|254780638|r 2 KKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALEYGAQSQ 81 (384)
Q Consensus 2 ~~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~~~~~~~~~ 81 (384)
+.+|||+||||+++||.+|||+||||||+||||||||+||+|.++|++|+.||||||||+||++||+||++++.......
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~~ 93 (336)
T KOG0713 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKDG 93 (336)
T ss_pred CCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 37778998498778888999999999999858999989877889999999999885588888887764576533344445
Q ss_pred CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 65210014432222223344435610137603444222212222211232221000001355444554431000234322
Q gi|254780638|r 82 GAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSSTGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSG 161 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~d~f~~~f~~~~~~~~~~~~~~~~~~~~~d~~~~~~islee~~~G~~~~i~~~~~~~C~~C~G~g 161 (384)
.. +. .+ .++|+.+|+.++....+.- ......++.++...+..+++..|.+..........+.|..-.+.-
T Consensus 94 ~~-g~----~~----~~~f~~~f~dfg~~~~g~~-~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~~g~~~ 163 (336)
T KOG0713 94 EG-GG----GG----NDIFSAFFGDFGVTVGGNP-LEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPAPGTRK 163 (336)
T ss_pred CC-CC----CC----CCHHHHHHCCCCCCCCCCC-CCCCCCCCCEEEEEHHHCHHHHHCCCHHHHHHCCCCEEECCCCCC
T ss_conf 56-77----66----4207886143344337875-667888775587632103012315547999861672651476455
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEE-ECCCCCCCCCCEECCCCCCCHHHHHCCCCCCCEEEC
Q ss_conf 5788542103553101121001100124686166656554698-354120011210001110000011001148501203
Q gi|254780638|r 162 AKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQII-PHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLS 240 (384)
Q Consensus 162 ~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~g~i~-~~~c~~C~G~g~~~~~~~~~I~Ip~G~~~G~~i~~~ 240 (384)
++...... ++..+.|....+ ...|..|.+.+...++...++.+..|...|....+.
T Consensus 164 ~~~~~~~~-----------------------~~~~~~g~~~~~q~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~ 220 (336)
T KOG0713 164 CNCRLEMF-----------------------TQQEGPGRFQMLQEAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFE 220 (336)
T ss_pred CCCHHHHE-----------------------EECCCCCHHHHHHHHHHCCCCCCCEEECCCCEEEEEEECCCCCCEEEEE
T ss_conf 57703640-----------------------2115887332013534314875200004773245431001588504543
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCEEEEEECHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCEEEECCE
Q ss_conf 67765678841664157531034684286414846999846665135424885167888231011685177887898881
Q gi|254780638|r 241 GEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEGTQTGKQFRLKGK 320 (384)
Q Consensus 241 g~G~~~~~~~~~GDl~i~i~~~~h~~f~r~g~dL~~~~~I~l~eal~G~~~~i~tldG~~i~i~i~~~~~~~~~~~i~g~ 320 (384)
..|.++. .+.+||++|.+..-+|+.|.|+++||++.+.|++.+++.|+...+.++++..+.+.....+.|+..++..++
T Consensus 221 ~~~~~h~-~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~~~~p~~~~~~~~~ 299 (336)
T KOG0713 221 LEGEPHI-DGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKKITWPGARTRKKGE 299 (336)
T ss_pred CCCCCCE-ECCCCCCEEEEEEECCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHC
T ss_conf 1587511-045677446667831542014763103577898999988888876412124434555512464312233422
Q ss_pred ECCCC-CCCCCCCEEEEEEEECCC-CCCH
Q ss_conf 02006-898865279999999298-9999
Q gi|254780638|r 321 GMPVI-NSGRKGDLYVQVQVETPQ-KLNK 347 (384)
Q Consensus 321 G~p~~-~~~~rGdl~i~~~v~~P~-~Ls~ 347 (384)
|||.. +....|++++.|.+.+|. .+|.
T Consensus 300 ~~~~l~~~~~~~~~~~t~~~~~~~~~~~~ 328 (336)
T KOG0713 300 GMPLLKNRNEKGNLYVTFDVEFPKSSLSD 328 (336)
T ss_pred CCHHHHCCCHHCCEEEEECCCCCCCCCCH
T ss_conf 46464324511135477414675432320
No 8
>KOG0715 consensus
Probab=100.00 E-value=2.8e-45 Score=345.35 Aligned_cols=248 Identities=38% Similarity=0.683 Sum_probs=217.4
Q ss_pred CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 87452487187998899999999999999975699887987999999999998760998999998772487653145556
Q gi|254780638|r 2 KKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALEYGAQSQ 81 (384)
Q Consensus 2 ~~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~~~~~~~~~ 81 (384)
.+.|||+||||+++||..|||+||++||++||||.|.+ ++|+++|++|++|||||||++||++||++|..+ .
T Consensus 41 ~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~-----~-- 112 (288)
T KOG0715 41 SKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ-----H-- 112 (288)
T ss_pred CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC-----C--
T ss_conf 76660330051888888899999999988639987887-421166788999999853488888887751310-----3--
Q ss_pred CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 65210014432222223344435610137603444222212222211232221000001355444554431000234322
Q gi|254780638|r 82 GAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSSTGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSG 161 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~d~f~~~f~~~~~~~~~~~~~~~~~~~~~d~~~~~~islee~~~G~~~~i~~~~~~~C~~C~G~g 161 (384)
.....++.+.|..+|++ .......+.+....+.++|+++..|..+.+.+.....|..|.|.|
T Consensus 113 --------~~~~g~~~~~~~~~~~~----------~~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~ 174 (288)
T KOG0715 113 --------GEFGGNPFDVFLEFFGG----------KMNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSG 174 (288)
T ss_pred --------CCCCCCCCCHHHHHHCC----------CCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCC
T ss_conf --------55568750167876353----------222224566532355437888752524406888602001014778
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCEECCCCCCCHHHHHCCCCCCCEEECC
Q ss_conf 57885421035531011210011001246861666565546983541200112100011100000110011485012036
Q gi|254780638|r 162 AKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLSG 241 (384)
Q Consensus 162 ~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~g~i~~~~c~~C~G~g~~~~~~~~~I~Ip~G~~~G~~i~~~g 241 (384)
..++.....|..|.|+|.+....+..+.+. +|..|.+.+.+..+.|..|.|.+.+...+.+.|.+|+|+.++.+|++.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~ 253 (288)
T KOG0715 175 AEEGAKRESCKTCSGRGLVSNPKEDPFILY-TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAG 253 (288)
T ss_pred CCCCCCCCCCHHHHCCCCCCCCCCCCCCEE-ECCCCCCCCEECCCHHHHHHCCCHHHHHEEEEECCCCCCCCCCEEEEEC
T ss_conf 645523340234426531035567863113-2122466643514467776546014432123303675555666799825
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCEEEEEECHHH
Q ss_conf 7765678841664157531034684286414846999846665
Q gi|254780638|r 242 EGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVT 284 (384)
Q Consensus 242 ~G~~~~~~~~~GDl~i~i~~~~h~~f~r~g~dL~~~~~I~l~e 284 (384)
.|.. ||.+.+.|.+++.|+|+|.|+++++.|++.+
T Consensus 254 ~~~~--------~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715 254 HGND--------DLFVRLIVAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred CCCC--------EEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 7763--------4899998446756432567521023325669
No 9
>KOG0714 consensus
Probab=99.97 E-value=1.4e-29 Score=232.94 Aligned_cols=300 Identities=30% Similarity=0.404 Sum_probs=186.7
Q ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 74524871879988999999999999999756998879-87999999999998760998999998772487653145556
Q gi|254780638|r 3 KADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRND-PEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALEYGAQSQ 81 (384)
Q Consensus 3 ~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d-~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~~~~~~~~~ 81 (384)
..|||+||||.++|+.+|||+|||+||++||||+|+.. ..|+++|++|+|||+||||+.+|.+||++|.+++.......
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~~ 81 (306)
T KOG0714 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSFS 81 (306)
T ss_pred CCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 54178883855111667888887888873389999733677888655555444431364667776530621135676656
Q ss_pred CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 65210014432222223344435610137603444222212222211232221000001355444554431000234322
Q gi|254780638|r 82 GAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSSTGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSG 161 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~d~f~~~f~~~~~~~~~~~~~~~~~~~~~d~~~~~~islee~~~G~~~~i~~~~~~~C~~C~G~g 161 (384)
................++|..||+........ ............ ....-.+..+.....-. ... .. .+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~-~~---~~~~~~ 153 (306)
T KOG0714 82 SSFTSELFYFLFRKPDKDFYEFFGVSSPFSGS-KKGYRDKNAAPG--EEAFKSEGKAFQSLYGP-KRK-QY---DSSGSD 153 (306)
T ss_pred CCCCCCCCEEECCCCHHHHHHHCCCCCCCCCC-CCCCCCCCCCCC--CCCCHHHHHHHHCCCCC-CCC-CC---CCCCCC
T ss_conf 66666753231367326799970988876444-445565555655--42100123455403675-533-33---323455
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCEECCCCCCCHHHHHCCCCCCCEEECC
Q ss_conf 57885421035531011210011001246861666565546983541200112100011100000110011485012036
Q gi|254780638|r 162 AKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLSG 241 (384)
Q Consensus 162 ~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~g~i~~~~c~~C~G~g~~~~~~~~~I~Ip~G~~~G~~i~~~g 241 (384)
......+. + .......++..+..|....++.........-. .......+.+.+.++|..|+.+.++.
T Consensus 154 ~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (306)
T KOG0714 154 RSARQSPP----------V--EHPLRVSLEDLYKGESKKMKISRQSFTSNGRE-GSSRSRYLSISIKPGWKEGTKITFPE 220 (306)
T ss_pred CCCCCCCC----------C--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCEEEEEECCCCCCCCCCCCCCC
T ss_conf 00035666----------5--56642210100124441020245555666545-66633034330364301465442554
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCEEE--EEECHHHHCCCCEEEEECCCCCCCCEEEC-CCCCCCCEEEEC
Q ss_conf 776567884166415753103468428641484699--98466651354248851678882310116-851778878988
Q gi|254780638|r 242 EGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCT--VPISIVTVAMGGTFDVATLDATHSRVTIP-EGTQTGKQFRLK 318 (384)
Q Consensus 242 ~G~~~~~~~~~GDl~i~i~~~~h~~f~r~g~dL~~~--~~I~l~eal~G~~~~i~tldG~~i~i~i~-~~~~~~~~~~i~ 318 (384)
.|+..+. ..+-++++.+..++|+.|.+.+++|.++ ..|++.+|++|+...++++++..+.+.+. ..+.++...+++
T Consensus 221 ~~~~~~~-~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (306)
T KOG0714 221 EGDEEPG-ILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEALLGVTVFVPTLDGRSYSLSINKDLIEPGEEDVIP 299 (306)
T ss_pred CCCCCCC-CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEECHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
T ss_conf 4555544-465322465411433112577654322434131387751142204654347411354443122445402334
Q ss_pred CEECCC
Q ss_conf 810200
Q gi|254780638|r 319 GKGMPV 324 (384)
Q Consensus 319 g~G~p~ 324 (384)
+.|||+
T Consensus 300 ~~~~~~ 305 (306)
T KOG0714 300 GEGLPC 305 (306)
T ss_pred CCCCCC
T ss_conf 678879
No 10
>pfam01556 DnaJ_C DnaJ C terminal region. This family consists of the C terminal region form the DnaJ protein. Although the function of this region is unknown, it is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress.
Probab=99.92 E-value=2.9e-25 Score=201.86 Aligned_cols=100 Identities=52% Similarity=0.935 Sum_probs=95.8
Q ss_pred CCEEEEEECCCCCCEEEECCCCEEEEEECHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCEEEECCEECCCCCC-CCCC
Q ss_conf 641575310346842864148469998466651354248851678882310116851778878988810200689-8865
Q gi|254780638|r 253 GDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEGTQTGKQFRLKGKGMPVINS-GRKG 331 (384)
Q Consensus 253 GDl~i~i~~~~h~~f~r~g~dL~~~~~I~l~eal~G~~~~i~tldG~~i~i~i~~~~~~~~~~~i~g~G~p~~~~-~~rG 331 (384)
|||+|+|++++|+.|+|+|+||+++++|+++||++|+++.|+||||+.+.|++|+++++|+.++|+|+|||..++ +.||
T Consensus 1 GDL~v~i~~~~h~~f~r~G~dL~~~~~I~~~~al~G~~~~i~~ldG~~i~i~ip~~~~~g~~~~i~g~Gmp~~~~~~~~G 80 (101)
T pfam01556 1 GDLYVVIKVKPHPVFKRDGNDLYVTLPISLKEALLGGTVEVPTLDGRKLKIKIPAGTQPGDVLRIKGKGMPIFKGSGGRG 80 (101)
T ss_pred CCEEEEEEECCCCCEEEECCEEEEEECCCHHHHHCCCCEEECCCCCCEEEEECCCEECCCCEEEECCCCCCCCCCCCCCC
T ss_conf 99999999947999899799899996589899725882564258996778710990258968986798786079999846
Q ss_pred CEEEEEEEECCCCCCHHHHHH
Q ss_conf 279999999298999999999
Q gi|254780638|r 332 DLYVQVQVETPQKLNKRQREL 352 (384)
Q Consensus 332 dl~i~~~v~~P~~Ls~~qk~l 352 (384)
||||+|+|.||++||++||++
T Consensus 81 dL~i~~~v~~P~~ls~~qk~l 101 (101)
T pfam01556 81 DLIVTFNVKIPKKLSSEQKEL 101 (101)
T ss_pred CEEEEEEEECCCCCCHHHHCC
T ss_conf 899999999799999899639
No 11
>KOG0691 consensus
Probab=99.91 E-value=2.2e-24 Score=195.62 Aligned_cols=75 Identities=48% Similarity=0.841 Sum_probs=70.2
Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 987452487187998899999999999999975699887987999999999998760998999998772487653
Q gi|254780638|r 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALE 75 (384)
Q Consensus 1 ~~~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~~~ 75 (384)
++++|||+||||+.+||..|||+|||++|++|||||||+||+|.++|+++++||+||+|+++|..||.+|.....
T Consensus 2 ~~~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~ 76 (296)
T KOG0691 2 VKDTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSS 76 (296)
T ss_pred CCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
T ss_conf 662018998388878888999999998888539877999858999999999999986479889999987530346
No 12
>KOG0716 consensus
Probab=99.90 E-value=7.7e-24 Score=191.67 Aligned_cols=73 Identities=48% Similarity=0.901 Sum_probs=69.5
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
Q ss_conf 4524871879988999999999999999756998879879999999999987609989999987724876531
Q gi|254780638|r 4 ADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALEY 76 (384)
Q Consensus 4 ~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~~~~ 76 (384)
-|||+|||++++||.++||||||+||++||||+|+++|++.+||++||+||+||||+.||..||.+|+.++..
T Consensus 31 ~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l 103 (279)
T KOG0716 31 LDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKL 103 (279)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 0699986898545568999999999998398768898206789999989999866803445677774677888
No 13
>KOG0717 consensus
Probab=99.88 E-value=1.5e-22 Score=182.52 Aligned_cols=77 Identities=45% Similarity=0.795 Sum_probs=69.0
Q ss_pred CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 874524871879988999999999999999756998879-87999999999998760998999998772487653145
Q gi|254780638|r 2 KKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRND-PEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALEYGA 78 (384)
Q Consensus 2 ~~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d-~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~~~~~~ 78 (384)
.+++||+||||.++|+.+|||+|||||||+|||||||+. ++|+++|+.|+.||+|||||+.|+=||...+.-+....
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~~ 83 (508)
T KOG0717 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGKN 83 (508)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC
T ss_conf 235778886021468878999999998886288879863899999999999999985684766667877999863788
No 14
>KOG0718 consensus
Probab=99.87 E-value=1.2e-22 Score=183.03 Aligned_cols=76 Identities=42% Similarity=0.779 Sum_probs=69.0
Q ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 74524871879988999999999999999756998879---87999999999998760998999998772487653145
Q gi|254780638|r 3 KADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRND---PEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALEYGA 78 (384)
Q Consensus 3 ~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d---~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~~~~~~ 78 (384)
+.|||.+|+|+|+||.+|||+|||++++-|||||+.+. +.||++|+.|.+||||||||+||++||-||..|++...
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t~g 86 (546)
T KOG0718 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKTEG 86 (546)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
T ss_conf 4668998589955477999999999987109754578467889999999999999985586777898875122355457
No 15
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.5e-22 Score=180.86 Aligned_cols=69 Identities=52% Similarity=0.954 Sum_probs=65.7
Q ss_pred CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 87452487187998899999999999999975699887987-9999999999987609989999987724
Q gi|254780638|r 2 KKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPE-AKEKFAQISEAYEVLRDPQKRALYDQGG 70 (384)
Q Consensus 2 ~~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~-A~ekFkeI~eAYevLsD~~kR~~YD~~G 70 (384)
...|||+||||+++||..|||+|||+||++||||+|++++. |+++|++|++||+||||+.+|+.||+++
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHC
T ss_conf 2334899819988888999999999999997868788753679999999988999841779898861310
No 16
>KOG0719 consensus
Probab=99.84 E-value=3.7e-21 Score=172.40 Aligned_cols=69 Identities=48% Similarity=0.933 Sum_probs=64.7
Q ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 74524871879988999999999999999756998--8798799999999999876099899999877248
Q gi|254780638|r 3 KADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQN--RNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGH 71 (384)
Q Consensus 3 ~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn--~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~ 71 (384)
++|+|+||||.++||..|||+|||||||+||||+| .++.+|.++|+.++.||+||||++||+.||+.|.
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~ 83 (264)
T KOG0719 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS 83 (264)
T ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 45779986210468789999999999887288766066677889999999999998627999998750178
No 17
>KOG0624 consensus
Probab=99.84 E-value=3.6e-21 Score=172.54 Aligned_cols=74 Identities=42% Similarity=0.811 Sum_probs=63.8
Q ss_pred CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH---HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
Q ss_conf 8745248718799889999999999999997569988798---79999999999987609989999987724876531
Q gi|254780638|r 2 KKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDP---EAKEKFAQISEAYEVLRDPQKRALYDQGGHEALEY 76 (384)
Q Consensus 2 ~~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~---~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~~~~ 76 (384)
-++|||+||||.++||..||-|||||||.|||||-=.+.+ .||.||-+|..|-||||||+||+++|+ |.+.+..
T Consensus 392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD~ 468 (504)
T KOG0624 392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLDP 468 (504)
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC-CCCCCCH
T ss_conf 5512788842003542778999999999835986444778887788756239988876269988741227-9999985
No 18
>KOG0550 consensus
Probab=99.81 E-value=2.1e-20 Score=167.00 Aligned_cols=66 Identities=47% Similarity=0.876 Sum_probs=63.9
Q ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 74524871879988999999999999999756998879-8799999999999876099899999877
Q gi|254780638|r 3 KADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRND-PEAKEKFAQISEAYEVLRDPQKRALYDQ 68 (384)
Q Consensus 3 ~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d-~~A~ekFkeI~eAYevLsD~~kR~~YD~ 68 (384)
.+|||+||||+++||..|||+|||++|+.||||+|.++ .+||.+|+||.+||.||||+.||..||.
T Consensus 372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds 438 (486)
T KOG0550 372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS 438 (486)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC
T ss_conf 0107988614411330125567787788737886742267789889888888887048788762001
No 19
>pfam00226 DnaJ DnaJ domain. DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.
Probab=99.80 E-value=1.7e-19 Score=160.45 Aligned_cols=63 Identities=62% Similarity=1.154 Sum_probs=61.8
Q ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 524871879988999999999999999756998879879999999999987609989999987
Q gi|254780638|r 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYD 67 (384)
Q Consensus 5 DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD 67 (384)
|||+||||+++||.+|||+|||+|+++||||+|+++++++++|++|++||+||+||.+|+.||
T Consensus 1 d~Y~vLgv~~~a~~~eIk~ay~~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~iL~d~~~R~~YD 63 (63)
T pfam00226 1 DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPEAEEKFKEINEAYEVLSDPEKRAIYD 63 (63)
T ss_pred CHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCC
T ss_conf 918778999994999999999999998698868996999999999999999969999997539
No 20
>KOG0721 consensus
Probab=99.71 E-value=2.1e-17 Score=145.46 Aligned_cols=72 Identities=35% Similarity=0.695 Sum_probs=65.5
Q ss_pred CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 874524871879988999999999999999756998879879999999999987609989999987724876
Q gi|254780638|r 2 KKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGGHEA 73 (384)
Q Consensus 2 ~~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~ 73 (384)
..-|+|+|||++++||++|||||||+|++||||||+++..+-|+.|..|+.||+.|+|++.|..|..||++.
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD 168 (230)
T KOG0721 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD 168 (230)
T ss_pred HCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
T ss_conf 058907761889998889999999986645187768986221999999999999851400178899828998
No 21
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.70 E-value=2e-17 Score=145.66 Aligned_cols=59 Identities=56% Similarity=1.011 Sum_probs=55.0
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 4524871879988999999999999999756998879-8799999999999876099899
Q gi|254780638|r 4 ADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRND-PEAKEKFAQISEAYEVLRDPQK 62 (384)
Q Consensus 4 ~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d-~~A~ekFkeI~eAYevLsD~~k 62 (384)
.|||+||||+++||.+|||+|||+||++||||+|+++ ++|+++|++|++||+||+||.|
T Consensus 1 ~d~Y~iLgl~~~a~~~~Ik~aYr~l~~~~HPD~~~~~~~~~~~~f~~i~~Ay~~L~d~~k 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 972665698999499999999999999869788999609899999999999998778898
No 22
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.69 E-value=3.9e-17 Score=143.53 Aligned_cols=55 Identities=58% Similarity=1.083 Sum_probs=53.7
Q ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 5248718799889999999999999997569988798799999999999876099
Q gi|254780638|r 5 DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRD 59 (384)
Q Consensus 5 DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD 59 (384)
|||+||||+++||.+|||+|||+||++||||++++++.|+++|++|++||+||+|
T Consensus 1 d~Y~vLgl~~~at~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~iL~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred CHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 9287779999939999999999999881998898817899999979999968438
No 23
>KOG0722 consensus
Probab=99.62 E-value=2.9e-16 Score=137.31 Aligned_cols=65 Identities=43% Similarity=0.822 Sum_probs=61.2
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 452487187998899999999999999975699887987999999999998760998999998772
Q gi|254780638|r 4 ADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQG 69 (384)
Q Consensus 4 ~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~ 69 (384)
.|-|++|||+++|+..||.||||+||++||||+|++ +++.+.|+.|.+|||+|.|++.|..||-+
T Consensus 33 enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722 33 ENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 648999611132167899999999998739765699-22433564220132326650667767888
No 24
>KOG0720 consensus
Probab=99.62 E-value=7e-16 Score=134.57 Aligned_cols=67 Identities=39% Similarity=0.596 Sum_probs=63.6
Q ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 74524871879988999999999999999756998879879999999999987609989999987724
Q gi|254780638|r 3 KADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGG 70 (384)
Q Consensus 3 ~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G 70 (384)
.+|.|.+|||..++|+++|||+|||+|+-.|||||. .+-|+|-||.+..|||||+|++||+.||+--
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred CCCCHHHCCCCCCCCHHHHHHHHHHHCEEECCCCCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 787243328888878999999877530575787667-7648999999999999963545566778988
No 25
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.59 E-value=2.2e-15 Score=130.92 Aligned_cols=56 Identities=41% Similarity=0.704 Sum_probs=49.6
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCC-H----HHHHHHHHHHHHHHHHCC
Q ss_conf 4524871879988999999999999999756998--879-8----799999999999876099
Q gi|254780638|r 4 ADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQN--RND-P----EAKEKFAQISEAYEVLRD 59 (384)
Q Consensus 4 ~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn--~~d-~----~A~ekFkeI~eAYevLsD 59 (384)
.|+|+||||+++||.+|||+|||+|+++|||||- .+- + .|++||++|++|||.|..
T Consensus 202 ~~~Y~iLgv~~~a~~~eik~ayr~l~~~~HPDkl~~~g~~~~~~~~A~~k~~~i~~Aye~i~~ 264 (269)
T PRK09430 202 EDAYKVLGVTESADDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 264 (269)
T ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 673899699999799999999999998849772320799999999999999999999999999
No 26
>TIGR02349 DnaJ_bact chaperone protein DnaJ; InterPro: IPR012724 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold . DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation . Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. DnaJ comprises a 70-residue N-terminal domain (the J-domain); a 30-residue glycine-rich region (the G-domain); a central domain containing 4 repeats of a CxxCxGxG motif (the CRR-domain); and a 120-170 residue C-terminal region. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins , either together or separately. This entry mostly consists of bacterial forms of DnaJ. The three components of the DnaK-DnaJ-GrpE system are typically encoded by consecutive genes. DnaJ homologues occur in many genomes, typically not encoded near DnaK and GrpE-like genes. Most such proteins are not included in this family, though some chloroplast homologues are included; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0009408 response to heat.
Probab=99.51 E-value=1.5e-13 Score=117.87 Aligned_cols=162 Identities=30% Similarity=0.595 Sum_probs=109.7
Q ss_pred CCCC-----CCCCCCCCCCCCCC----CCCCCC-CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCEECCCCCCCCCCC
Q ss_conf 2233-----44435610137603----444222-2122222112322210000013554445544310002343225788
Q gi|254780638|r 96 FSEL-----FEGIFGGIMGSGRS----YKRSSS-TGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPG 165 (384)
Q Consensus 96 ~~d~-----f~~~f~~~~~~~~~----~~~~~~-~~~~~~d~~~~~~islee~~~G~~~~i~~~~~~~C~~C~G~g~~~~ 165 (384)
+++. |+++|+++|+++.+ .++... .....+-.-..+.++|+=.|.-+-.-+..+...
T Consensus 102 ~F~~~~~~~fgdiF~~fFGg~~gsF~g~~r~~~~~~~~~~~~G~Dl~~~l~l~f~EAv~G~eK~i~~------------- 168 (386)
T TIGR02349 102 FFGDFTGSFFGDIFGDFFGGGGGSFAGSGRRKRRANRSGPRRGSDLRYDLELTFEEAVFGVEKEIEI------------- 168 (386)
T ss_pred CCCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEHEEECEEEEEEE-------------
T ss_conf 7887667764101155607874301017888765676667557753899988700333121788886-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEE------------CCCCCCCCCCEECCCCCCCHHHHHCCCC
Q ss_conf 5421035531011210011001246861666565546983------------5412001121000111000001100114
Q gi|254780638|r 166 TNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIP------------HPCSKCHGQGRVSEEKLLSVNVPPGVDD 233 (384)
Q Consensus 166 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~g~i~~------------~~c~~C~G~g~~~~~~~~~I~Ip~G~~~ 233 (384)
.....|+.|+|+|...- +-..+|+.|+|+|.|.. ..|+.|+|.|.+.+++ .
T Consensus 169 ~~~~~C~~C~GsGA~~g------~~~~tC~~C~G~Gqv~~~~~t~fG~f~~~~tC~~C~G~G~ii~~~-C---------- 231 (386)
T TIGR02349 169 PRLESCETCHGSGAKPG------TDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEP-C---------- 231 (386)
T ss_pred EEEEECCCCCCCCCCCC------CCCEECCCCCCEEEEEEECCCEEEEEEEEEECCCCCCEEEEEECC-C----------
T ss_conf 25662688876111088------885478778975899997140658999858778858423896336-8----------
Q ss_pred CCCEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCEEEEEECHHHHCCCCEEEEECCCCCCCCEEECCCCCCCC
Q ss_conf 85012036776567884166415753103468428641484699984666513542488516788823101168517788
Q gi|254780638|r 234 GTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEGTQTGK 313 (384)
Q Consensus 234 G~~i~~~g~G~~~~~~~~~GDl~i~i~~~~h~~f~r~g~dL~~~~~I~l~eal~G~~~~i~tldG~~i~i~i~~~~~~~~ 313 (384)
=.-+|+|. +. .-++|.|+||+|+.+|+
T Consensus 232 ---~~C~G~G~------------------------------------------------~~--~~~~~~v~IPaGV~~G~ 258 (386)
T TIGR02349 232 ---STCKGKGR------------------------------------------------VK--ERKTISVKIPAGVDTGQ 258 (386)
T ss_pred ---CCCCCCEE------------------------------------------------EE--EEEEEEEECCCCCCCCC
T ss_conf ---99887406------------------------------------------------98--88899996179988898
Q ss_pred EEEECCEECCCCCCCCCCCEEEEEEEE
Q ss_conf 789888102006898865279999999
Q gi|254780638|r 314 QFRLKGKGMPVINSGRKGDLYVQVQVE 340 (384)
Q Consensus 314 ~~~i~g~G~p~~~~~~rGdl~i~~~v~ 340 (384)
.|||+|+|=+-.+++.+|||||.+.|.
T Consensus 259 ~lrv~G~G~aG~~GG~~GDLYv~i~Vk 285 (386)
T TIGR02349 259 RLRVSGEGEAGENGGPNGDLYVVIRVK 285 (386)
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 888767775678868888627999980
No 27
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.50 E-value=1.9e-14 Score=124.21 Aligned_cols=72 Identities=36% Similarity=0.677 Sum_probs=64.6
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---C--HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 452487187998899999999999999975699887---9--87999999999998760998999998772487653
Q gi|254780638|r 4 ADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRN---D--PEAKEKFAQISEAYEVLRDPQKRALYDQGGHEALE 75 (384)
Q Consensus 4 ~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~---d--~~A~ekFkeI~eAYevLsD~~kR~~YD~~G~~~~~ 75 (384)
=|+|+|||++.++|..|||++||+|++||||||-+. + .+-||++++|+.||+.|+|+..|..|=.||.....
T Consensus 98 fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~p 174 (610)
T COG5407 98 FDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSP 174 (610)
T ss_pred CCHHHHHCCCCCCCHHHHHHHHHHHEEECCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 88188612467875778999998662401732137777157899999999999998763018889889861899987
No 28
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.7e-11 Score=101.66 Aligned_cols=44 Identities=30% Similarity=0.621 Sum_probs=32.4
Q ss_pred CCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 00001100114850120367765678841664157531034684
Q gi|254780638|r 223 LSVNVPPGVDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQF 266 (384)
Q Consensus 223 ~~I~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~~~~h~~ 266 (384)
++|+||||+..|+.++++|+|=....+...|||+|.|.+.--..
T Consensus 292 ~~l~ip~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ 335 (371)
T COG0484 292 VKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVKVETPKN 335 (371)
T ss_pred EEEECCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCC
T ss_conf 78862899746867997689735468887588899999976887
No 29
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.08 E-value=1.3e-09 Score=89.45 Aligned_cols=43 Identities=33% Similarity=0.544 Sum_probs=28.3
Q ss_pred CCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 0000110011485012036776567884166415753103468
Q gi|254780638|r 223 LSVNVPPGVDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQ 265 (384)
Q Consensus 223 ~~I~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~~~~h~ 265 (384)
++|.||+|+..|+++|++|+|=....++..|||+|+|.|.--.
T Consensus 289 v~l~ip~gt~~G~~lri~G~Gmp~~~~~~~GDl~V~~~V~~P~ 331 (376)
T PRK10767 289 VKLKVPGETQTGKLFRMRGKGVKSVRGGAQGDLLCRVVVETPV 331 (376)
T ss_pred EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEECCC
T ss_conf 8897799646895899899898989979977889999998999
No 30
>pfam00684 DnaJ_CXXCXGXG DnaJ central domain (4 repeats). The central cysteine-rich (CR) domain of DnaJ proteins contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DNAJ cysteine rich domain and various hydrophobic peptides has been found.
Probab=99.07 E-value=1.1e-10 Score=97.23 Aligned_cols=75 Identities=43% Similarity=1.008 Sum_probs=66.7
Q ss_pred CCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---EEEEEEEECCCCCCCCEEE-ECCCCCCCCCC
Q ss_conf 355444554431000234322578854210355310112100110---0124686166656554698-35412001121
Q gi|254780638|r 141 GKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQ---SFFSIERACSTCRGSGQII-PHPCSKCHGQG 215 (384)
Q Consensus 141 G~~~~i~~~~~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~~---~~~~~~~~C~~C~G~g~i~-~~~c~~C~G~g 215 (384)
|.+++|.+++.+.|+.|+|+|+.++..+..|+.|+|+|++++..+ ++++++++|+.|+|+|+++ +++|+.|+|.|
T Consensus 1 G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~G 79 (79)
T pfam00684 1 GTTKTITLSRKVTCPHCHGTGAKPGKKPKTCPTCNGSGVVVRVQRTPGGVFQFQQTCPACGGTGKIIEKDPCKVCKGKG 79 (79)
T ss_pred CCEEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCEEEEECCCCCCCCCCCC
T ss_conf 9579998254568899966040899988689898887799999957983588688996688646188998698986849
No 31
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.02 E-value=1.6e-09 Score=88.95 Aligned_cols=64 Identities=28% Similarity=0.618 Sum_probs=54.8
Q ss_pred CCCHHHHCCCCC--CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH---HHHHHHHHHHCCHHHHHHHH
Q ss_conf 452487187998--89999999999999997569988798799999---99999987609989999987
Q gi|254780638|r 4 ADFYQVLGIDRN--ATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKF---AQISEAYEVLRDPQKRALYD 67 (384)
Q Consensus 4 ~DyY~iLGV~~~--As~~eIKkAYrklA~k~HPDkn~~d~~A~ekF---keI~eAYevLsD~~kR~~YD 67 (384)
+||++++|+++. -+...+++.||+|.+++||||-.+..+.+... ..||+||.||+||-+|+.|=
T Consensus 2 ~NyFelf~l~~~f~iD~~~L~~~y~~LQ~~~HPDk~~~~~e~~~~~~~Ss~IN~AY~tLk~Pl~RA~YL 70 (166)
T PRK01356 2 QNYFQLLGLPQTYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNKAYSTLKDALKRAEYM 70 (166)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 878988399964677999999999999998797867881799999999999999999978989999999
No 32
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=98.94 E-value=4.4e-09 Score=85.76 Aligned_cols=65 Identities=32% Similarity=0.551 Sum_probs=55.3
Q ss_pred CCCCHHHHCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCCHH-----HHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 745248718799--8899999999999999975699887987-----9999999999987609989999987
Q gi|254780638|r 3 KADFYQVLGIDR--NATDRQLKTAFRSLAMKYHPDQNRNDPE-----AKEKFAQISEAYEVLRDPQKRALYD 67 (384)
Q Consensus 3 ~~DyY~iLGV~~--~As~~eIKkAYrklA~k~HPDkn~~d~~-----A~ekFkeI~eAYevLsD~~kR~~YD 67 (384)
..||++++|+++ +-+...++++||+|.+++||||-.+..+ |.+.=..||+||.||+||-+|+.|=
T Consensus 5 ~~nyF~lf~lp~~f~iD~~~L~~~y~~LQ~~~HPDkf~~~s~~e~~~a~~~sa~iN~AY~tLk~pl~RA~YL 76 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYRTLRDPLKRATYL 76 (176)
T ss_pred CCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 656788829997677799999999999999879675778899999999999999999999975999999999
No 33
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=98.93 E-value=3.1e-09 Score=86.80 Aligned_cols=63 Identities=29% Similarity=0.568 Sum_probs=54.5
Q ss_pred CCHHHHCCCCC--CCHHHHHHHHHHHHHHHCCCCCCCCHHHH-----HHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 52487187998--89999999999999997569988798799-----99999999987609989999987
Q gi|254780638|r 5 DFYQVLGIDRN--ATDRQLKTAFRSLAMKYHPDQNRNDPEAK-----EKFAQISEAYEVLRDPQKRALYD 67 (384)
Q Consensus 5 DyY~iLGV~~~--As~~eIKkAYrklA~k~HPDkn~~d~~A~-----ekFkeI~eAYevLsD~~kR~~YD 67 (384)
||++++|+++. -+...++++||+|.+++||||-.+..+.+ +.=..||+||.||+||-+|+.|=
T Consensus 2 nyF~lf~l~~~f~iD~~~L~~~y~~Lq~~~HPDkf~~~~~~e~~~a~~~ss~iN~AY~tLk~pl~RA~yL 71 (171)
T PRK05014 2 NYFTLFGLPARYDIDTQLLSLRYQELQRQVHPDKFANASEREQLAAVQQAAQINDAYQTLKHPLSRAEYM 71 (171)
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 7776669998788799999999999999869774058989999999999999999999974889989999
No 34
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=98.89 E-value=2.9e-09 Score=87.01 Aligned_cols=54 Identities=22% Similarity=0.433 Sum_probs=46.9
Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 9874524871879988999999999999999756998879879999999999987609
Q gi|254780638|r 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLR 58 (384)
Q Consensus 1 ~~~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLs 58 (384)
|+++.=|+||||+++||.+||++|||+|.++.|||+. +++ ...++||||.|+|-
T Consensus 60 Mt~~EA~~ILGl~~~as~~~I~~ahrkLM~knHPD~G-GS~---ylA~KINeAKd~Ll 113 (114)
T PTZ00100 60 MSKSEACKILNIPPTANKERIREVHKQLMLRNHPDNG-GST---YLASKVNEAKDFLL 113 (114)
T ss_pred CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-CCH---HHHHHHHHHHHHHH
T ss_conf 5999999981999999999999999999997099889-828---99999999999974
No 35
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.5e-09 Score=87.52 Aligned_cols=67 Identities=36% Similarity=0.575 Sum_probs=57.7
Q ss_pred CCCCHHHHCCCC---CCCHHHHHHHHHHHHHHHCCCCC--CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 745248718799---88999999999999999756998--87987999999999998760998999998772
Q gi|254780638|r 3 KADFYQVLGIDR---NATDRQLKTAFRSLAMKYHPDQN--RNDPEAKEKFAQISEAYEVLRDPQKRALYDQG 69 (384)
Q Consensus 3 ~~DyY~iLGV~~---~As~~eIKkAYrklA~k~HPDkn--~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~ 69 (384)
.-|+|.+||+++ -|+..+|.+|-++...+||||+- .|+.+-.+-|+-|+.|||||+|+.+|.+||..
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~ 113 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN 113 (379)
T ss_pred HHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCC
T ss_conf 566999854276525789589999999999873865021058877289999999999985158887650344
No 36
>KOG1789 consensus
Probab=98.86 E-value=4.4e-09 Score=85.78 Aligned_cols=56 Identities=32% Similarity=0.596 Sum_probs=46.9
Q ss_pred CCCCCCHHHHCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 9874524871879988----9999999999999997569988798799999999999876099
Q gi|254780638|r 1 MKKADFYQVLGIDRNA----TDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRD 59 (384)
Q Consensus 1 ~~~~DyY~iLGV~~~A----s~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD 59 (384)
|+.-+-|+||.|+-+- ..+-||++|+|||+|||||||| |-.|+|-.++.|||.|+.
T Consensus 1278 mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP---EGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789 1278 MSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP---EGREMFERVNKAYELLSS 1337 (2235)
T ss_pred CCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHHHHHH
T ss_conf 665666777106467888765899999999999972999992---478999999999999888
No 37
>KOG1150 consensus
Probab=98.83 E-value=1.1e-08 Score=82.77 Aligned_cols=64 Identities=31% Similarity=0.562 Sum_probs=57.4
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH-HHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 45248718799889999999999999997569988798-79999999999987609989999987
Q gi|254780638|r 4 ADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDP-EAKEKFAQISEAYEVLRDPQKRALYD 67 (384)
Q Consensus 4 ~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~-~A~ekFkeI~eAYevLsD~~kR~~YD 67 (384)
-++|+||.|.+..|.++||+-||+|++-.|||||++|. -|..-|--+..||..|-|+.-|..-+
T Consensus 53 LNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150 53 LNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred CCHHHHHHCCCCCCHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_conf 67478773487787899999987510233688895437889999999999999975789999999
No 38
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=98.79 E-value=3e-08 Score=79.75 Aligned_cols=67 Identities=30% Similarity=0.507 Sum_probs=55.9
Q ss_pred CCCCCCHHHHCCCCC--CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH-----HHHHHHHHHHHCCHHHHHHHH
Q ss_conf 987452487187998--8999999999999999756998879879999-----999999987609989999987
Q gi|254780638|r 1 MKKADFYQVLGIDRN--ATDRQLKTAFRSLAMKYHPDQNRNDPEAKEK-----FAQISEAYEVLRDPQKRALYD 67 (384)
Q Consensus 1 ~~~~DyY~iLGV~~~--As~~eIKkAYrklA~k~HPDkn~~d~~A~ek-----FkeI~eAYevLsD~~kR~~YD 67 (384)
|-..|.++++|+++. -+..++.++||+|.+++||||-.+..+.+.+ =..||+||.||+||-+|+.|=
T Consensus 1 ~~~~~hF~lf~l~~~f~iD~~~L~~~y~~LQ~~~HPDrf~~~s~~e~~~a~~~sa~iN~AY~tLk~pl~RA~yL 74 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSAALNEAYQTLKSAPRRARYL 74 (173)
T ss_pred CCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 99976646449997676799999999999999869573679899999999999999999999975999999999
No 39
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.75 E-value=4.6e-08 Score=78.45 Aligned_cols=64 Identities=23% Similarity=0.371 Sum_probs=53.8
Q ss_pred CCCHHHHCCCCC--CCHHHHHHHHHHHHHHHCCCCCCCCHH-----HHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 452487187998--899999999999999975699887987-----9999999999987609989999987
Q gi|254780638|r 4 ADFYQVLGIDRN--ATDRQLKTAFRSLAMKYHPDQNRNDPE-----AKEKFAQISEAYEVLRDPQKRALYD 67 (384)
Q Consensus 4 ~DyY~iLGV~~~--As~~eIKkAYrklA~k~HPDkn~~d~~-----A~ekFkeI~eAYevLsD~~kR~~YD 67 (384)
++|++++|+++. -+....++.||+|..++||||-.+..+ |.++=..||+||.||+||-+|+.|=
T Consensus 2 ~NyFelf~L~~~f~ID~~~L~~~y~~LQ~~~HPDkf~~~s~~Ek~~s~~~Ss~iN~AY~tLkdpl~RA~YL 72 (173)
T PRK01773 2 NNPFALFDLPVDFQLDQALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAI 72 (173)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 98377629997776799999999999999869685668999999999999999999999974888899999
No 40
>KOG0568 consensus
Probab=98.49 E-value=2e-07 Score=73.78 Aligned_cols=55 Identities=31% Similarity=0.703 Sum_probs=47.7
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH-HHCC
Q ss_conf 4524871879988999999999999999756998879879999999999987-6099
Q gi|254780638|r 4 ADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYE-VLRD 59 (384)
Q Consensus 4 ~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYe-vLsD 59 (384)
..||.||||...|+++|++.||.+||+++|||-..+..+ .++|..|.+||- ||+.
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~ad-aa~f~qideafrkvlq~ 102 (342)
T KOG0568 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEAD-AARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHHHHHH
T ss_conf 999998362026764579999999999709998975300-89999999999999999
No 41
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=98.22 E-value=2.3e-06 Score=66.22 Aligned_cols=45 Identities=31% Similarity=0.432 Sum_probs=35.3
Q ss_pred CCCCCCHHHHHC--CCCCCCEEECCCCCCCCCC-CCCCCEEEEEECCC
Q ss_conf 111000001100--1148501203677656788-41664157531034
Q gi|254780638|r 219 EEKLLSVNVPPG--VDDGTRIRLSGEGGAGVYG-GAPGDLYIFISVKK 263 (384)
Q Consensus 219 ~~~~~~I~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDl~i~i~~~~ 263 (384)
..+.|.|+|||| +..|++++++|+|=+...+ ...|||+|.+.|+=
T Consensus 297 DGr~l~i~~~~g~vi~pg~~~~i~geGMP~~~~~~~~GdL~I~f~V~F 344 (422)
T PTZ00037 297 DGRKLLVNTPPGEVVRPGDIKVITNEGMPTYKSPFKKGNLYVTFEVIF 344 (422)
T ss_pred CCCEEEEECCCCCEECCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEC
T ss_conf 699789861899847899699966899877899898778899999988
No 42
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.14 E-value=9.4e-06 Score=61.85 Aligned_cols=40 Identities=40% Similarity=0.792 Sum_probs=21.0
Q ss_pred CCCEEECCCCCCCCEEEECCEECCCCCCCCCCCEEEEEEE
Q ss_conf 2310116851778878988810200689886527999999
Q gi|254780638|r 300 HSRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQV 339 (384)
Q Consensus 300 ~i~i~i~~~~~~~~~~~i~g~G~p~~~~~~rGdl~i~~~v 339 (384)
++.|+||+|+..|++++++|+|-|-.+++..|||||.+.|
T Consensus 159 ~~~v~IP~G~~~G~~i~~~G~G~~~~~g~~~GDL~v~i~v 198 (306)
T PRK10266 159 TLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHI 198 (306)
T ss_pred EEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEE
T ss_conf 7988719987789789973588878888967637999997
No 43
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=6.8e-05 Score=55.68 Aligned_cols=62 Identities=34% Similarity=0.545 Sum_probs=44.5
Q ss_pred HHHHCCCCCCCH--HHHHHHHHHHHHHHCCCCCCCCHHH-----HHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 487187998899--9999999999999756998879879-----9999999999876099899999877
Q gi|254780638|r 7 YQVLGIDRNATD--RQLKTAFRSLAMKYHPDQNRNDPEA-----KEKFAQISEAYEVLRDPQKRALYDQ 68 (384)
Q Consensus 7 Y~iLGV~~~As~--~eIKkAYrklA~k~HPDkn~~d~~A-----~ekFkeI~eAYevLsD~~kR~~YD~ 68 (384)
-.+.|..+.+.. +-.+.-|+.++++||||+.....++ -+++..++.||.+|.||-+|.+|=.
T Consensus 4 ~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 4 FVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 001032788999888867779999998583123574469999999999985775788988999999999
No 44
>KOG0723 consensus
Probab=97.57 E-value=0.00014 Score=53.34 Aligned_cols=56 Identities=25% Similarity=0.484 Sum_probs=45.7
Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCH
Q ss_conf 987452487187998899999999999999975699887987999999999998760998
Q gi|254780638|r 1 MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60 (384)
Q Consensus 1 ~~~~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~ 60 (384)
|+.+.--.||||+++++.+-||.|.||.-.--|||+. ++|=-. .+|||||++|...
T Consensus 53 Msr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~G-GSPYlA---sKINEAKdlLe~~ 108 (112)
T KOG0723 53 MSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRG-GSPYLA---SKINEAKDLLEGT 108 (112)
T ss_pred CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC-CCHHHH---HHHHHHHHHHHCC
T ss_conf 1568899882787545688999999999980798679-988799---9988999998443
No 45
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.54 E-value=3.7e-05 Score=57.55 Aligned_cols=55 Identities=18% Similarity=0.376 Sum_probs=24.0
Q ss_pred CCCCCEEEECCEECCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH-HHHHCCCCCCCCCCC
Q ss_conf 17788789888102006898865279999999298999999999999-998728888810058
Q gi|254780638|r 309 TQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEE-FEQISSQDNNPQSTG 370 (384)
Q Consensus 309 ~~~~~~~~i~g~G~p~~~~~~rGdl~i~~~v~~P~~Ls~~qk~ll~~-l~~~~~~~~~~~~~~ 370 (384)
+++|.+..+-|.=- .+.|.|-|+ |.==++|+..+..-++. +.++-...-.|-...
T Consensus 259 ievGdiV~ViG~V~-----~r~g~lQiE--~~~me~L~G~ea~eVr~rid~ald~~AeP~~~~ 314 (715)
T COG1107 259 IEVGDIVEVIGEVT-----RRDGRLQIE--IEAMEKLTGDEAAEVRKRIDEALDRRAEPADVG 314 (715)
T ss_pred CCCCCEEEEEEEEE-----ECCCCEEEE--EHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 87785699987775-----047827876--243577518518999999999986203875345
No 46
>pfam01556 DnaJ_C DnaJ C terminal region. This family consists of the C terminal region form the DnaJ protein. Although the function of this region is unknown, it is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress.
Probab=97.42 E-value=0.00016 Score=53.09 Aligned_cols=77 Identities=32% Similarity=0.511 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf 21222221123222100000135544455443100023432257885421035531011210011001246861666565
Q gi|254780638|r 120 TGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRG 199 (384)
Q Consensus 120 ~~~~~~d~~~~~~islee~~~G~~~~i~~~~~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G 199 (384)
....|.|+...+.+++.++..|++..+.--
T Consensus 15 f~r~G~dL~~~~~I~~~~al~G~~~~i~~l-------------------------------------------------- 44 (101)
T pfam01556 15 FKRDGNDLYVTLPISLKEALLGGTVEVPTL-------------------------------------------------- 44 (101)
T ss_pred EEEECCEEEEEECCCHHHHHCCCCEEECCC--------------------------------------------------
T ss_conf 899799899996589899725882564258--------------------------------------------------
Q ss_pred CCEEEECCCCCCCCCCEECCCCCCCHHHHHCCCCCCCEEECCCCCCCCC-CCCCCCEEEEEECCCCC
Q ss_conf 5469835412001121000111000001100114850120367765678-84166415753103468
Q gi|254780638|r 200 SGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLSGEGGAGVY-GGAPGDLYIFISVKKHQ 265 (384)
Q Consensus 200 ~g~i~~~~c~~C~G~g~~~~~~~~~I~Ip~G~~~G~~i~~~g~G~~~~~-~~~~GDl~i~i~~~~h~ 265 (384)
..+.++|+||+|+..|++++++|+|=.... ...+|||+|.+++.--.
T Consensus 45 -------------------dG~~i~i~ip~~~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~v~~P~ 92 (101)
T pfam01556 45 -------------------DGRKLKIKIPAGTQPGDVLRIKGKGMPIFKGSGGRGDLIVTFNVKIPK 92 (101)
T ss_pred -------------------CCCEEEEECCCEECCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCC
T ss_conf -------------------996778710990258968986798786079999846899999999799
No 47
>KOG0712 consensus
Probab=96.99 E-value=0.00069 Score=48.46 Aligned_cols=11 Identities=18% Similarity=0.585 Sum_probs=6.5
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780638|r 19 RQLKTAFRSLA 29 (384)
Q Consensus 19 ~eIKkAYrklA 29 (384)
.||-.||--|+
T Consensus 45 kei~~AyevLs 55 (337)
T KOG0712 45 KEISQAYEVLS 55 (337)
T ss_pred HHHHHHHHHHC
T ss_conf 88888998864
No 48
>TIGR01213 TIGR01213 conserved hypothetical protein TIGR01213; InterPro: IPR005912 The members of this family of conserved hypothetical proteins show a low level of similarity to several predicted RNA pseudouridine synthases. All trusted members of this family are archaeal. Several eukaryotic homologs lack N-terminal homology including two CXXC motifs. .
Probab=96.90 E-value=0.00042 Score=50.04 Aligned_cols=68 Identities=25% Similarity=0.572 Sum_probs=51.1
Q ss_pred CCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCEECCCCCCCHHHHHCCC--CCCCEEECCCCCC
Q ss_conf 1210011001246861666565546983541200112100011100000110011--4850120367765
Q gi|254780638|r 178 GRVYTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVD--DGTRIRLSGEGGA 245 (384)
Q Consensus 178 G~~~~~~~~~~~~~~~C~~C~G~g~i~~~~c~~C~G~g~~~~~~~~~I~Ip~G~~--~G~~i~~~g~G~~ 245 (384)
|+-.+..++..|..=||..|+|+|..+..+|++|++.|..-.+-.-+|--+|=++ -|+...|+|.|=+
T Consensus 201 GRYRKL~RgIPQT~WP~r~C~G~GtlvdsPCe~CnyTGk~y~~sve~~i~~p~~~~~~G~~~~fHGaGRE 270 (450)
T TIGR01213 201 GRYRKLVRGIPQTRWPCRKCRGKGTLVDSPCERCNYTGKLYPESVEELIAKPFLKATGGTDAVFHGAGRE 270 (450)
T ss_pred EEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEHHHHHHCCCEEEEEEECCCC
T ss_conf 1232321788888886568884143515888777888775874068882014664228806999625664
No 49
>KOG0431 consensus
Probab=96.53 E-value=0.0031 Score=43.73 Aligned_cols=16 Identities=19% Similarity=0.169 Sum_probs=5.6
Q ss_pred CHHHHCCCCEEEEECC
Q ss_conf 6665135424885167
Q gi|254780638|r 281 SIVTVAMGGTFDVATL 296 (384)
Q Consensus 281 ~l~eal~G~~~~i~tl 296 (384)
-+....-|-+-+|..|
T Consensus 362 ~I~~W~~GKE~NIRAL 377 (453)
T KOG0431 362 EIRRWSEGKEGNIRAL 377 (453)
T ss_pred HHHHHCCCCCCCHHHH
T ss_conf 8777403540129999
No 50
>KOG2813 consensus
Probab=96.46 E-value=0.0019 Score=45.28 Aligned_cols=29 Identities=34% Similarity=0.984 Sum_probs=17.0
Q ss_pred ECCCCCCCCEEEECCCCCCCCCCEECCCCCCC
Q ss_conf 16665655469835412001121000111000
Q gi|254780638|r 193 ACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLS 224 (384)
Q Consensus 193 ~C~~C~G~g~i~~~~c~~C~G~g~~~~~~~~~ 224 (384)
.|+.|+|+|+ ++|..|.|.|.+..-..+.
T Consensus 247 ~C~tC~grG~---k~C~TC~gtgsll~~t~~v 275 (406)
T KOG2813 247 ECHTCKGRGK---KPCTTCSGTGSLLNYTRIV 275 (406)
T ss_pred CCCCCCCCCC---CCCCCCCCCCCEEEEEEEE
T ss_conf 5874557997---4552256865301257889
No 51
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.0043 Score=42.73 Aligned_cols=54 Identities=37% Similarity=0.600 Sum_probs=47.1
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCCH-----HHHHHHHHHHHHHHHH
Q ss_conf 4524871879988999999999999999756998--8798-----7999999999998760
Q gi|254780638|r 4 ADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQN--RNDP-----EAKEKFAQISEAYEVL 57 (384)
Q Consensus 4 ~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn--~~d~-----~A~ekFkeI~eAYevL 57 (384)
.|-|.+|||...++..+||++||++-.++|||+- .+.+ .+++++++|++||+-+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~~~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 5799984684023099999999999874499999863783999999999999999998744
No 52
>KOG3192 consensus
Probab=96.10 E-value=0.011 Score=39.79 Aligned_cols=65 Identities=29% Similarity=0.554 Sum_probs=47.4
Q ss_pred CCCHHHHCCCC-CCCHHHHHH-HHHHHHHHHCCCCCCC----CH-HHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 45248718799-889999999-9999999975699887----98-799999999999876099899999877
Q gi|254780638|r 4 ADFYQVLGIDR-NATDRQLKT-AFRSLAMKYHPDQNRN----DP-EAKEKFAQISEAYEVLRDPQKRALYDQ 68 (384)
Q Consensus 4 ~DyY~iLGV~~-~As~~eIKk-AYrklA~k~HPDkn~~----d~-~A~ekFkeI~eAYevLsD~~kR~~YD~ 68 (384)
++||+|.|... .+....+-. -|.-...+.|||+... ++ -|.|.=.++|+||.+|.||-+|++|=.
T Consensus 8 ~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192 8 SRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 889999666657789961143788889986271123662224512678878999999999875889999999
No 53
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=95.90 E-value=0.008 Score=40.81 Aligned_cols=64 Identities=34% Similarity=0.828 Sum_probs=27.5
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------EEEEEEEECCCCCCCCEEE-ECCCCCCCCCCEE
Q ss_conf 000234322578854210355310112100110------------0124686166656554698-3541200112100
Q gi|254780638|r 153 KCSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQ------------SFFSIERACSTCRGSGQII-PHPCSKCHGQGRV 217 (384)
Q Consensus 153 ~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~~------------~~~~~~~~C~~C~G~g~i~-~~~c~~C~G~g~~ 217 (384)
.|+.|.|.|... .....|+.|+|.|.+-...+ ++.+...+|+.|+|+|++. ...|+.|.|.|.+
T Consensus 4 ~C~~C~g~G~i~-v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~d~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv 80 (715)
T COG1107 4 KCPECGGKGKIV-VGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKV 80 (715)
T ss_pred CCCCCCCCCEEE-EEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEECCCEEEEEEEECCCCCCCEEE
T ss_conf 265668986275-31356564365134233483553112012434110379877711055168988625667981037
No 54
>TIGR02642 phage_xxxx uncharacterized phage protein; InterPro: IPR013464 This uncharacterised protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus (strain YJ016), Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to the phage lambda antitermination protein Q..
Probab=95.78 E-value=0.0042 Score=42.86 Aligned_cols=32 Identities=34% Similarity=0.948 Sum_probs=18.1
Q ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31000234322578854210355310112100
Q gi|254780638|r 151 AVKCSTCSGSGAKPGTNPMDCNICNGSGRVYT 182 (384)
Q Consensus 151 ~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~ 182 (384)
...||.|.|+|......|..|+.|+|+|++..
T Consensus 182 ~~~CP~C~Gtg~~~~~~P~~C~~C~G~G~~~~ 213 (270)
T TIGR02642 182 SRKCPRCRGTGLRLRRQPEECDKCAGTGRLLP 213 (270)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 48879865667888977887777786433030
No 55
>KOG2813 consensus
Probab=94.75 E-value=0.016 Score=38.66 Aligned_cols=59 Identities=34% Similarity=0.808 Sum_probs=32.5
Q ss_pred CCEECCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCEEC
Q ss_conf 31000234322578--854210355310112100110012468616665655469835412001121000
Q gi|254780638|r 151 AVKCSTCSGSGAKP--GTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVS 218 (384)
Q Consensus 151 ~~~C~~C~G~g~~~--~~~~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~g~i~~~~c~~C~G~g~~~ 218 (384)
...|+.|+|.|... ...+..|+.|-|.. .........|..|+|+|+ .+|++|.|.|.+.
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~------~~k~gt~~~C~~C~G~G~---~~C~tC~grG~k~ 258 (406)
T KOG2813 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGVP------PPKIGTHDLCYMCHGRGI---KECHTCKGRGKKP 258 (406)
T ss_pred CEECCCCCCCCCCCCCCCCCEECCCCCCCC------CCCCCCCCHHHHCCCCCC---CCCCCCCCCCCCC
T ss_conf 665368677776654668601344340778------987775435343268886---5587455799745
No 56
>KOG0724 consensus
Probab=94.40 E-value=0.02 Score=37.93 Aligned_cols=54 Identities=30% Similarity=0.497 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCC----CHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 8899999999999999975699887----98799999999999876099899999877
Q gi|254780638|r 15 NATDRQLKTAFRSLAMKYHPDQNRN----DPEAKEKFAQISEAYEVLRDPQKRALYDQ 68 (384)
Q Consensus 15 ~As~~eIKkAYrklA~k~HPDkn~~----d~~A~ekFkeI~eAYevLsD~~kR~~YD~ 68 (384)
-|+..+|+.+|+..++.+|||+-.. ...-++-|+.|.+||+||++..+|+..|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~ 60 (335)
T KOG0724 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS 60 (335)
T ss_pred CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 5443205666544112456313433322003367788999999998524554357778
No 57
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB; InterPro: IPR004640 This family describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66. The gene for Hsc20 in Escherichia coli, hscB, is not induced by heat shock.; GO: 0051087 chaperone binding, 0006457 protein folding.
Probab=94.19 E-value=0.09 Score=33.28 Aligned_cols=54 Identities=28% Similarity=0.463 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCC--CH---HHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 899999999999999975699887--98---7999999999998760998999998772
Q gi|254780638|r 16 ATDRQLKTAFRSLAMKYHPDQNRN--DP---EAKEKFAQISEAYEVLRDPQKRALYDQG 69 (384)
Q Consensus 16 As~~eIKkAYrklA~k~HPDkn~~--d~---~A~ekFkeI~eAYevLsD~~kR~~YD~~ 69 (384)
.+...+...|+.+..+||||+-.. .. .+...-.+++.||.+|.||-+|..|=..
T Consensus 3 ~d~~~~~~~~~~~~~~~~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 61 (159)
T TIGR00714 3 LDEKALNLRYLDLQKQYHPDNFASGSAQEQLAGLEQSTELNQAYKTLKDPLLRAEYLLL 61 (159)
T ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 11789989999988863430233466788888777666788889988888888999999
No 58
>TIGR02642 phage_xxxx uncharacterized phage protein; InterPro: IPR013464 This uncharacterised protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus (strain YJ016), Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to the phage lambda antitermination protein Q..
Probab=93.82 E-value=0.017 Score=38.53 Aligned_cols=44 Identities=11% Similarity=0.066 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCH
Q ss_conf 99999999999999975699887987999999999998760998
Q gi|254780638|r 17 TDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60 (384)
Q Consensus 17 s~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~ 60 (384)
+-+-|-+=|.-+..++||+-.++..-+.----.||++-+-+-+.
T Consensus 61 D~~A~~~L~~~~~~~~~~~~~~G~~~~~l~~l~l~~~L~r~~~~ 104 (270)
T TIGR02642 61 DVEAIQKLLAHICEQLEVSIAPGVAAAALAKLALNEVLERLVDA 104 (270)
T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 88999999998524556676626899999850006771775311
No 59
>pfam00684 DnaJ_CXXCXGXG DnaJ central domain (4 repeats). The central cysteine-rich (CR) domain of DnaJ proteins contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DNAJ cysteine rich domain and various hydrophobic peptides has been found.
Probab=92.91 E-value=0.069 Score=34.09 Aligned_cols=47 Identities=30% Similarity=0.839 Sum_probs=30.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEE------------CCCCCCCCCCEEC
Q ss_conf 5421035531011210011001246861666565546983------------5412001121000
Q gi|254780638|r 166 TNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIP------------HPCSKCHGQGRVS 218 (384)
Q Consensus 166 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~g~i~~------------~~c~~C~G~g~~~ 218 (384)
.....|+.|+|+|.... .-..+|+.|+|.|++.. .+|+.|.|.|.+.
T Consensus 9 ~r~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i 67 (79)
T pfam00684 9 SRKVTCPHCHGTGAKPG------KKPKTCPTCNGSGVVVRVQRTPGGVFQFQQTCPACGGTGKII 67 (79)
T ss_pred EECCCCCCCCCEEECCC------CCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCEEEEE
T ss_conf 54568899966040899------988689898887799999957983588688996688646188
No 60
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=91.05 E-value=0.11 Score=32.78 Aligned_cols=15 Identities=27% Similarity=0.669 Sum_probs=11.7
Q ss_pred CCHHHHHHHHHHHHC
Q ss_conf 588999999887505
Q gi|254780638|r 369 TGFFARMKDFFDSLK 383 (384)
Q Consensus 369 ~~~~~~~~~~~~~~~ 383 (384)
.+.|+.+|++|.++.
T Consensus 706 ~g~~d~IR~lFA~~~ 720 (944)
T PRK00349 706 TGVFDPIRELFAGTP 720 (944)
T ss_pred HCCHHHHHHHHHCCH
T ss_conf 145799999984194
No 61
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=90.13 E-value=0.15 Score=31.73 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHHHC
Q ss_conf 588999999887505
Q gi|254780638|r 369 TGFFARMKDFFDSLK 383 (384)
Q Consensus 369 ~~~~~~~~~~~~~~~ 383 (384)
.+.|+.+|++|.++.
T Consensus 1575 ~gifd~IR~lFA~t~ 1589 (1809)
T PRK00635 1575 FDIAPSLRNFYASLT 1589 (1809)
T ss_pred HCCCHHHHHHHCCCH
T ss_conf 645289999974798
No 62
>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.
Probab=89.28 E-value=0.15 Score=31.60 Aligned_cols=38 Identities=34% Similarity=0.704 Sum_probs=22.9
Q ss_pred EEEEEEEE---CCCCCCCCEEE---------ECCCCCCCCCCEECCCCCCCH
Q ss_conf 01246861---66656554698---------354120011210001110000
Q gi|254780638|r 186 SFFSIERA---CSTCRGSGQII---------PHPCSKCHGQGRVSEEKLLSV 225 (384)
Q Consensus 186 ~~~~~~~~---C~~C~G~g~i~---------~~~c~~C~G~g~~~~~~~~~I 225 (384)
+-|+.+.. |..|+|-|.|- -.+|+.|+|..+-. ++++|
T Consensus 760 GRFSFNVkGGRCE~C~GDG~ikiEMhFLPDVYV~CevC~GkRYN~--eTLEv 809 (956)
T TIGR00630 760 GRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNR--ETLEV 809 (956)
T ss_pred CCEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC--CCCEE
T ss_conf 861465888843242688547885134888203178778840376--40168
No 63
>pfam11833 DUF3353 Protein of unknown function (DUF3353). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=89.18 E-value=1.1 Score=25.43 Aligned_cols=38 Identities=26% Similarity=0.461 Sum_probs=29.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 9988999999999999999756998879879999999999987609
Q gi|254780638|r 13 DRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLR 58 (384)
Q Consensus 13 ~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLs 58 (384)
+++||.+||.+|-.+|-.+| .+|+.+. .+|--|||.+-
T Consensus 1 se~ASfEEIq~Ar~~ll~~~-----~~d~~~~---~~IEaAYD~iL 38 (193)
T pfam11833 1 SEDASFEEIQAARNRLLAEY-----AGDEQAR---AKIEAAYDAIL 38 (193)
T ss_pred CCCCCHHHHHHHHHHHHHHH-----CCCHHHH---HHHHHHHHHHH
T ss_conf 99999899999999999996-----6979999---99999999999
No 64
>TIGR01213 TIGR01213 conserved hypothetical protein TIGR01213; InterPro: IPR005912 The members of this family of conserved hypothetical proteins show a low level of similarity to several predicted RNA pseudouridine synthases. All trusted members of this family are archaeal. Several eukaryotic homologs lack N-terminal homology including two CXXC motifs. .
Probab=85.96 E-value=0.33 Score=29.27 Aligned_cols=67 Identities=15% Similarity=0.073 Sum_probs=43.9
Q ss_pred CEEEEEECCCCCCEEEECCCCEEEEEEC------HHHHCCCCEEEEECCCCCCCCEEECCCCCCCCEEEECCEEC
Q ss_conf 4157531034684286414846999846------66513542488516788823101168517788789888102
Q gi|254780638|r 254 DLYIFISVKKHQFFKRDGADLYCTVPIS------IVTVAMGGTFDVATLDATHSRVTIPEGTQTGKQFRLKGKGM 322 (384)
Q Consensus 254 Dl~i~i~~~~h~~f~r~g~dL~~~~~I~------l~eal~G~~~~i~tldG~~i~i~i~~~~~~~~~~~i~g~G~ 322 (384)
+-+..++..+|..+++.-.++...-+|+ +..+|-|-+|.=.||. + +.=..+..++.-.++.|....+
T Consensus 324 ~~~~~~K~~~~r~~KvYrALV~~~~~v~d~dl~~l~~~L~G~~I~QrTP~-R-V~hRRaDlvR~Rrvy~v~~~~~ 396 (450)
T TIGR01213 324 EEVEEVKEEKHRVRKVYRALVEVDDPVSDEDLEELVKELEGATIKQRTPK-R-VLHRRADLVRERRVYEVDLSKV 396 (450)
T ss_pred HHHHHHHCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHCCCEEEECCCC-C-HHHCCCCEEEEEEEEEEEEEEE
T ss_conf 78887630578533158886887599788999999985079878702788-4-2105786134345766420211
No 65
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=85.57 E-value=0.77 Score=26.58 Aligned_cols=40 Identities=28% Similarity=0.644 Sum_probs=20.5
Q ss_pred CCCHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1000001355444554431000234322578854210355310112100
Q gi|254780638|r 134 SLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYT 182 (384)
Q Consensus 134 slee~~~G~~~~i~~~~~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~ 182 (384)
.|..+..|.... .....|..|.|.. ...|+.|+|+-++..
T Consensus 85 ~L~~lL~g~~~~---~~~~~C~~CGg~r------fvpC~~C~GS~k~~~ 124 (147)
T cd03031 85 ELRKLLKGIRAR---AGGGVCEGCGGAR------FVPCSECNGSCKVFA 124 (147)
T ss_pred CHHHHHHHCCCC---CCCCCCCCCCCCC------EEECCCCCCCCEEEE
T ss_conf 699985026566---8898567778837------588999999726863
No 66
>KOG2824 consensus
Probab=85.13 E-value=0.7 Score=26.88 Aligned_cols=15 Identities=33% Similarity=0.693 Sum_probs=6.9
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 210355310112100
Q gi|254780638|r 168 PMDCNICNGSGRVYT 182 (384)
Q Consensus 168 ~~~C~~C~G~G~~~~ 182 (384)
...|..|+|+-++..
T Consensus 240 FlpC~~C~GS~kv~~ 254 (281)
T KOG2824 240 FLPCSNCHGSCKVHE 254 (281)
T ss_pred EEECCCCCCCEEEEE
T ss_conf 575478899535610
No 67
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; InterPro: IPR011888 Many bacterial species are capable of anaerobic growth by using dimethylsulphoxide (DMSO) as the terminal electron acceptor, with DMSO reductase as the terminal elctron transfer enzyme. In Escherichia coli and many other Gram-negative bacteria DMSO reductase is a membrane-bound enzyme composed of three subunits; a catalytic molybdenum-containing subunit (DmsA), an electron transfer subunit containing a [4Fe-4S] cluster (DmsB), and a hydrophobic membrane-spanning anchor subunit which attaches the enzyme to the cytoplasmic membrane (DmsC) , . It is generally thought now that DmsAB faces the periplasm, contradicting previous results suggesting a cytoplasmic location. The N-terminal region of DmsA contains a "twin-arginine" signal sequence, suggesting export to the periplasm occurs via the TAT secretion pathway. This entry represents known and predicted bacterial DmsA polypeptides. Several species contain one or more paralogs of DmsA. In E. coli, the two paralogs of DmsA, YnfE and YnfF, are encoded within the ynfEFGHI operon . YnfE and YnfF cannot form a functional complex with DmsBC, but YnfFGH can restore growth on DMSO when DmABC is deleted. The function of YnfE is not known and it appears to prevent formation of the YnfFGH complex if present.; GO: 0009389 dimethyl sulfoxide reductase activity, 0030151 molybdenum ion binding, 0051539 4 iron 4 sulfur cluster binding.
Probab=84.40 E-value=0.094 Score=33.13 Aligned_cols=47 Identities=34% Similarity=0.562 Sum_probs=31.2
Q ss_pred HHHHHHHHHCCCCCCC-----CHHHHHHHHHHH--HHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 9999999975699887-----987999999999--9987609989999987724876
Q gi|254780638|r 24 AFRSLAMKYHPDQNRN-----DPEAKEKFAQIS--EAYEVLRDPQKRALYDQGGHEA 73 (384)
Q Consensus 24 AYrklA~k~HPDkn~~-----d~~A~ekFkeI~--eAYevLsD~~kR~~YD~~G~~~ 73 (384)
++|+ +-|||||=+- -+-=|-||+.|| ||+++.-|.-||=. .+||.++
T Consensus 99 S~R~--rvY~PDRLkYPmkRVGKRGEGKF~RISWdEA~~~IA~~Lk~~~-~~YGN~a 152 (849)
T TIGR02166 99 SLRR--RVYNPDRLKYPMKRVGKRGEGKFERISWDEATDTIADNLKRII-EKYGNEA 152 (849)
T ss_pred CCCC--CCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHCCCCE
T ss_conf 2132--0048753457400014534655665577999999998778888-7518824
No 68
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=84.40 E-value=0.49 Score=28.01 Aligned_cols=14 Identities=29% Similarity=0.745 Sum_probs=11.0
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 58899999988750
Q gi|254780638|r 369 TGFFARMKDFFDSL 382 (384)
Q Consensus 369 ~~~~~~~~~~~~~~ 382 (384)
.+.|..+|++|...
T Consensus 698 tg~Fd~IR~lFA~t 711 (935)
T COG0178 698 TGVFDDIRELFAGT 711 (935)
T ss_pred HCCHHHHHHHHHHC
T ss_conf 12437899998209
No 69
>KOG2824 consensus
Probab=84.37 E-value=0.91 Score=26.06 Aligned_cols=37 Identities=32% Similarity=0.765 Sum_probs=20.6
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEE--------CCCCCCCCCCEE
Q ss_conf 1035531011210011001246861666565546983--------541200112100
Q gi|254780638|r 169 MDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIP--------HPCSKCHGQGRV 217 (384)
Q Consensus 169 ~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~g~i~~--------~~c~~C~G~g~~ 217 (384)
..|..|.|.+.+ +|..|+|.-+++. .+|..|+-+|.+
T Consensus 230 ~~C~~CGg~rFl------------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLv 274 (281)
T KOG2824 230 GVCESCGGARFL------------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLV 274 (281)
T ss_pred CCCCCCCCCCEE------------ECCCCCCCEEEEEECCCCCCEEECCCCCCCCCE
T ss_conf 767776894657------------547889953561000677767887666778815
No 70
>KOG0714 consensus
Probab=79.50 E-value=0.49 Score=27.98 Aligned_cols=54 Identities=35% Similarity=0.706 Sum_probs=31.7
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 4524871879988999999999999999756998879879999999999987609989999987724
Q gi|254780638|r 4 ADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGG 70 (384)
Q Consensus 4 ~DyY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G 70 (384)
.+||++||++..++.. +++|+ |++.. +. ++.|..+..|..+|+++ +|..||..+
T Consensus 98 ~~~~~~~g~~~~~~~~--~~~~~--------~~~~~-~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~ 151 (306)
T KOG0714 98 KDFYEFFGVSSPFSGS--KKGYR--------DKNAA-PG-EEAFKSEGKAFQSLYGP-KRKQYDSSG 151 (306)
T ss_pred HHHHHHCCCCCCCCCC--CCCCC--------CCCCC-CC-CCCCHHHHHHHHCCCCC-CCCCCCCCC
T ss_conf 6799970988876444--44556--------55556-55-42100123455403675-533333234
No 71
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=79.06 E-value=0.89 Score=26.13 Aligned_cols=11 Identities=36% Similarity=0.444 Sum_probs=6.2
Q ss_pred EEEEEEECCCC
Q ss_conf 99999992989
Q gi|254780638|r 334 YVQVQVETPQK 344 (384)
Q Consensus 334 ~i~~~v~~P~~ 344 (384)
.-.+.|.||-.
T Consensus 625 Lk~v~v~iPlg 635 (944)
T PRK00349 625 LKNVDVEIPLG 635 (944)
T ss_pred CCCCCEEECCC
T ss_conf 88764354389
No 72
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=78.86 E-value=1.3 Score=24.93 Aligned_cols=53 Identities=19% Similarity=0.600 Sum_probs=35.0
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCC
Q ss_conf 5443100023432257885421035531011210011001246861666565546983541200112
Q gi|254780638|r 148 FPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQ 214 (384)
Q Consensus 148 ~~~~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~g~i~~~~c~~C~G~ 214 (384)
|.....|..|. ....||.|...-...+..+ .-.|..|+-. ..+...|+.|.+.
T Consensus 432 ys~~l~C~~Cg--------~v~~Cp~Cd~~lt~H~~~~-----~L~CH~Cg~~-~~~p~~Cp~Cgs~ 484 (730)
T COG1198 432 YAPLLLCRDCG--------YIAECPNCDSPLTLHKATG-----QLRCHYCGYQ-EPIPQSCPECGSE 484 (730)
T ss_pred CCCEEECCCCC--------CCCCCCCCCCCEEEECCCC-----EEEECCCCCC-CCCCCCCCCCCCC
T ss_conf 65400425689--------8024899995127864798-----0670779998-9988779899997
No 73
>cd01801 Tsc13_N Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=77.64 E-value=0.64 Score=27.18 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=28.5
Q ss_pred CCHHHHCC-CCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 52487187-9988999999999999999756998
Q gi|254780638|r 5 DFYQVLGI-DRNATDRQLKTAFRSLAMKYHPDQN 37 (384)
Q Consensus 5 DyY~iLGV-~~~As~~eIKkAYrklA~k~HPDkn 37 (384)
-+|-.+-| +++||-.|||+.++|+-.+|+|+|-
T Consensus 11 k~~~~~kv~s~~aTi~dlK~~~~k~~p~~yp~RQ 44 (77)
T cd01801 11 KPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQ 44 (77)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHE
T ss_conf 6478975069986399999999976889881040
No 74
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=77.34 E-value=1 Score=25.72 Aligned_cols=14 Identities=14% Similarity=0.427 Sum_probs=8.3
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 58899999988750
Q gi|254780638|r 369 TGFFARMKDFFDSL 382 (384)
Q Consensus 369 ~~~~~~~~~~~~~~ 382 (384)
.+.|+.+|++|.++
T Consensus 688 ~g~fd~IR~lfa~~ 701 (1809)
T PRK00635 688 IKAFDDLRELFAEQ 701 (1809)
T ss_pred HCCHHHHHHHHHCC
T ss_conf 53408899998079
No 75
>PRK05580 primosome assembly protein PriA; Validated
Probab=74.02 E-value=2 Score=23.57 Aligned_cols=53 Identities=21% Similarity=0.605 Sum_probs=32.4
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCC
Q ss_conf 5443100023432257885421035531011210011001246861666565546983541200112
Q gi|254780638|r 148 FPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQ 214 (384)
Q Consensus 148 ~~~~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~g~i~~~~c~~C~G~ 214 (384)
|.....|..|. ....|+.|++.-...+.... -.|..|.-. ......|+.|.+.
T Consensus 401 ya~~~~C~~Cg--------~~~~C~~C~~~L~~h~~~~~-----l~Ch~Cg~~-~~~~~~Cp~Cgs~ 453 (699)
T PRK05580 401 YAPFLLCRDCG--------WVARCPHCDGPLTLHRAGRR-----LRCHHCGYQ-EPIPRACPECGST 453 (699)
T ss_pred CCCEEECHHCC--------CEEECCCCCCEEEECCCCCC-----EECCCCCCC-CCCCCCCCCCCCC
T ss_conf 22514745319--------94565678986342068983-----322646883-6575546567997
No 76
>PRK04023 DNA polymerase II large subunit; Validated
Probab=71.58 E-value=2.7 Score=22.63 Aligned_cols=64 Identities=20% Similarity=0.453 Sum_probs=35.2
Q ss_pred CCHHCCC-CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCC
Q ss_conf 0000013-554445544310002343225788542103553101121001100124686166656554698354120011
Q gi|254780638|r 135 LEEAFSG-KTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIPHPCSKCHG 213 (384)
Q Consensus 135 lee~~~G-~~~~i~~~~~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~C~~C~G~g~i~~~~c~~C~G 213 (384)
+.++... ....+.+. ...|+.|.-. .....|+.|.+.-.. ...|+.|.+. .....|++|..
T Consensus 617 I~~Aa~~~g~i~vevg-~R~Cp~Cg~e-----T~~~~C~~CG~~T~~----------~~~c~~C~~~--~~~~~c~~c~~ 678 (1128)
T PRK04023 617 INKAAEKGGTIEVEVG-NRKCPSCGKE-----TFYRRCPFCGTHTEP----------VYRCPRCGIE--VDEEVCPKCGR 678 (1128)
T ss_pred HHHHHHCCCCEEEEEE-EEECCCCCCC-----CCCCCCCCCCCCCCC----------CCCCCCCCCC--CCCCCCCCCCC
T ss_conf 9999833693699982-0288999983-----575578777996654----------3247766665--56653544577
Q ss_pred CCE
Q ss_conf 210
Q gi|254780638|r 214 QGR 216 (384)
Q Consensus 214 ~g~ 216 (384)
...
T Consensus 679 ~~~ 681 (1128)
T PRK04023 679 EPT 681 (1128)
T ss_pred CCC
T ss_conf 677
No 77
>TIGR00354 polC DNA polymerase II, large subunit DP2; InterPro: IPR004475 This family represents the large subunit, DP2, of a two subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0006308 DNA catabolic process.
Probab=69.07 E-value=3.5 Score=21.90 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=29.3
Q ss_pred CEEEEECCCCCCCCEEECCCCCCCCEEEECCEECCCC-CCC--CCCCEEEEEE---EECCCC
Q ss_conf 2488516788823101168517788789888102006-898--8652799999---992989
Q gi|254780638|r 289 GTFDVATLDATHSRVTIPEGTQTGKQFRLKGKGMPVI-NSG--RKGDLYVQVQ---VETPQK 344 (384)
Q Consensus 289 ~~~~i~tldG~~i~i~i~~~~~~~~~~~i~g~G~p~~-~~~--~rGdl~i~~~---v~~P~~ 344 (384)
+.+.|+|+-=.+|.+++. +|+-.|.-.- .+. .-+|+||+++ |++|+.
T Consensus 796 TDlP~THFkP~EigVsVE---------kLRELGY~rD~yG~EL~de~QivELkpQDViipes 848 (1173)
T TIGR00354 796 TDLPVTHFKPAEIGVSVE---------KLRELGYERDIYGDELKDEDQIVELKPQDVIIPES 848 (1173)
T ss_pred CCCCCCCCCCCCCCCEEE---------EEECCCCCCCCCCCCCCCCCEEEEEECCCEEECCC
T ss_conf 578876634650342111---------10003655565666453786589864261674671
No 78
>TIGR02729 Obg_CgtA GTP-binding protein Obg/CgtA; InterPro: IPR014100 This entry describes a universal, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure..
Probab=66.22 E-value=9.7 Score=18.69 Aligned_cols=45 Identities=22% Similarity=0.477 Sum_probs=24.7
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEE---ECCCCEEEEEE
Q ss_conf 114850120367765678841664157531034684286---41484699984
Q gi|254780638|r 231 VDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKR---DGADLYCTVPI 280 (384)
Q Consensus 231 ~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~~~~h~~f~r---~g~dL~~~~~I 280 (384)
..+|+++.+- +| +. |+. |+..|.=-...-|.|-= .|....+.+++
T Consensus 108 ~~~g~~~~~a-kG--G~-GG~-GN~~Fkts~n~AP~~ae~G~~GE~r~~~LEL 155 (296)
T TIGR02729 108 VEEGQKFVIA-KG--GK-GGL-GNAHFKTSTNRAPRFAEPGEPGEEREVRLEL 155 (296)
T ss_pred CCCCCEEEEE-EC--CC-CCC-CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 1789799998-67--88-897-7761028644688524588988558999976
No 79
>PRK01271 4-oxalocrotonate tautomerase; Provisional
Probab=64.66 E-value=6.7 Score=19.85 Aligned_cols=20 Identities=20% Similarity=0.561 Sum_probs=15.9
Q ss_pred EEEEE-CCCCCCHHHHHHHHH
Q ss_conf 99999-298999999999999
Q gi|254780638|r 336 QVQVE-TPQKLNKRQRELLEE 355 (384)
Q Consensus 336 ~~~v~-~P~~Ls~~qk~ll~~ 355 (384)
|+.|+ ||.+||++||+.|-+
T Consensus 3 Hi~IK~fP~~lseeqk~~La~ 23 (75)
T PRK01271 3 HIDIKCFPRELDEEQKAALAA 23 (75)
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 567673588788999999999
No 80
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex . The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. .
Probab=64.60 E-value=3.4 Score=21.97 Aligned_cols=48 Identities=17% Similarity=0.396 Sum_probs=22.7
Q ss_pred CCCCCCCCCCCCCCCCCEEE--EEE-EECCCCCCCCEEEECCCCCCCCCCE
Q ss_conf 10355310112100110012--468-6166656554698354120011210
Q gi|254780638|r 169 MDCNICNGSGRVYTTAQSFF--SIE-RACSTCRGSGQIIPHPCSKCHGQGR 216 (384)
Q Consensus 169 ~~C~~C~G~G~~~~~~~~~~--~~~-~~C~~C~G~g~i~~~~c~~C~G~g~ 216 (384)
..||.|.|...-..++.+.- ++. -.|..|.-.=..++.+|..|.-++.
T Consensus 189 ~~CPaCGs~PvasMv~~g~~~~GlRYlsCslCat~Wh~VRvKCs~Ce~sk~ 239 (312)
T TIGR01562 189 TLCPACGSRPVASMVRIGHKAEGLRYLSCSLCATEWHVVRVKCSACEESKK 239 (312)
T ss_pred CCCCCCCCCCHHHHHCCCCCCCCHHHHCCCCCCCCCCEEEEEECCCCCCCC
T ss_conf 223678778616662036765531222000001476706666527787676
No 81
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family; InterPro: IPR004659 The eubacterial degradosome is a large, multiprotein, multienzyme complex involved in RNA processing and degradation in Escherichia coli and other proteobacteria . The components of the RNA degradosome in E. coli (EBI-1169250 from INTACT) are: Ribonuclease E (Rne), P21513 from SWISSPROT, IPR004659 from INTERPRO ATP-dependent RNA helicase (RhlB), P0A8J8 from SWISSPROT, IPR000629 from INTERPRO Polynucleotide phosphorylase (Pnp), , IPR012162 from INTERPRO Enolase (Eno), P0A6P9 from SWISSPROT, IPR000941 from INTERPRO Associated components: The chaperone protein DnaK (,IPR012725 from INTERPRO) associates to abnormal complexes in which the canonical components RhlB and PNPase are not present or present in limiting amount and could be involved in repairing such incorrectly assembled degradosomes. Polyphosphate kinase (Ppk), P0A7B1 from SWISSPROT, IPR003414 from INTERPRO appears to maintain an appropriate microenvironment, removing inhibitory polyphosphate and NDPs and regenerating ATP. Subunit composition of the E. coli degradosome(see: http://biocyc.org/ECOLI/NEW-IMAGE?type=POLYPEPTIDE&object=CPLX0-2381): [(Ppk)4][(Rne)4][(RhlB)2][(Pnp)3][(Eno)2] In vitro a "minimal" degradosome composed of only RNase E, PNPase and RhlB degrades malEF REP RNA in an ATP-dependent manner in vitro, with activity equivalent to purified whole degradosomes. RNase E enzymatic function is dispensible, whereas PNPase must be catalytically active and incorporated into the degradosome for degradation to occur . RNase E provides the organizational structure for the degradosome . It is tethered to the cytoplasmic membrane via its amino-terminus and its carboxy-terminal half, which is largly unstructured and poorly conserved, cooridnates the binding of PNPase, RhlB and enolase. The loss of this portion of the protein prevents degradation of a number of degradosome substrates, including the ptsG and mukB mRNAs and RNA I , , . Ribonuclease E 3.1.4 from EC is responsible for maturing 5S rRNA from its precursors from all the rRNA genes. It also cleaves RNA I, a molecule that controls the replication of ColE1 plasmid DNA. It is the major endoribonuclease participating in mRNA turnover in Escherichia coli, and initiates decay of RNAs by cutting them internally near their 5'-end. It is able to remove poly A tails by an endonucleolytic process. Ribonuclease G is smaller than RNase E lacking the C-terminal region. It is involved in processing of the 5' end of 16S rRNA, and may be involved in chromosome segregation and cell division too. RNase E is a major subunit the eubacterial degradosome. It is a large, multiprotein, multienzyme complex involved in RNA processing and degradation in Escherichia coli and other proteobacteria . It consists of the RNA degradation enzymes RNase E (Rne) and PNPase (Pnp), as well as the ATP-dependent RNA helicase (RhlB) and the metabolic enzyme enolase (Eno) , , .; GO: 0004540 ribonuclease activity, 0006396 RNA processing, 0005737 cytoplasm.
Probab=64.00 E-value=2.8 Score=22.61 Aligned_cols=50 Identities=26% Similarity=0.319 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH-HHCCHH--HHHHHHHHH
Q ss_conf 9988999999999999999756998879879999999999987-609989--999987724
Q gi|254780638|r 13 DRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYE-VLRDPQ--KRALYDQGG 70 (384)
Q Consensus 13 ~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYe-vLsD~~--kR~~YD~~G 70 (384)
+.+++.++|++=+..|..+|. .-.+|++..+.=+- +=.+++ +|-+-|.++
T Consensus 204 a~g~~~~~l~~D~~~L~~~W~--------~i~~~~~~~~~p~l~l~~E~~~i~r~~rD~~~ 256 (464)
T TIGR00757 204 AEGASEEELKKDLEELLRKWE--------KIKEKAQKRSAPILELYEEDDIIKRVLRDYLD 256 (464)
T ss_pred CCCCCHHHHHHHHHHHHHHHH--------HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 379998999999999999899--------99998504785410112450478999998510
No 82
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=62.68 E-value=6.4 Score=19.97 Aligned_cols=51 Identities=16% Similarity=0.398 Sum_probs=29.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEE-EEEE-EECCCCCCCCEEEECCCCCCCCC
Q ss_conf 885421035531011210011001-2468-61666565546983541200112
Q gi|254780638|r 164 PGTNPMDCNICNGSGRVYTTAQSF-FSIE-RACSTCRGSGQIIPHPCSKCHGQ 214 (384)
Q Consensus 164 ~~~~~~~C~~C~G~G~~~~~~~~~-~~~~-~~C~~C~G~g~i~~~~c~~C~G~ 214 (384)
.+.....||.|.+......+..+. -+.. -.|..|.-.=..++-.|+.|...
T Consensus 183 ~~~~~~~CPvCGs~Pvasvv~~g~~~G~RyL~CslC~teW~~~R~~C~~C~~~ 235 (307)
T PRK03564 183 YGEQRQYCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQS 235 (307)
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 77778859988987514557506878706886487777402135346888898
No 83
>pfam07092 DUF1356 Protein of unknown function (DUF1356). This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=62.18 E-value=5.7 Score=20.37 Aligned_cols=22 Identities=27% Similarity=0.836 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 8542103553101121001100
Q gi|254780638|r 165 GTNPMDCNICNGSGRVYTTAQS 186 (384)
Q Consensus 165 ~~~~~~C~~C~G~G~~~~~~~~ 186 (384)
++...+||.|.|.|++.+.++-
T Consensus 28 g~~~vtCPTCqGtGrIp~eqe~ 49 (231)
T pfam07092 28 GRDSITCPTCQGTGRIPREQEN 49 (231)
T ss_pred CCCCEECCCCCCCCCCCCCHHH
T ss_conf 7885046877677616823031
No 84
>KOG2724 consensus
Probab=61.99 E-value=10 Score=18.50 Aligned_cols=84 Identities=17% Similarity=0.213 Sum_probs=60.7
Q ss_pred CEEEEEECCCCCCEEEECCCCEEEEEECHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCEEE--ECCEECCCCCCCCCC
Q ss_conf 415753103468428641484699984666513542488516788823101168517788789--888102006898865
Q gi|254780638|r 254 DLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEGTQTGKQFR--LKGKGMPVINSGRKG 331 (384)
Q Consensus 254 Dl~i~i~~~~h~~f~r~g~dL~~~~~I~l~eal~G~~~~i~tldG~~i~i~i~~~~~~~~~~~--i~g~G~p~~~~~~rG 331 (384)
-+|++.+++++..|.-.+--+.|...=.+.+-=.| +.-+.-.+...++|-++.-++-|.++. |-.+|||....+..+
T Consensus 370 pkve~~ev~edda~ysKkckvfykKdKEf~dkGvg-tl~lkp~~~~k~qlLvradtnlGnilLN~Ll~kgMkctr~gknn 448 (487)
T KOG2724 370 PKVETVEVQEDDAVYSKKCKVFYKKDKEFTDKGVG-TLHLKPNDRGKFQLLVRADTNLGNILLNSLLNKGMKCTRVGKNN 448 (487)
T ss_pred CEEEEECCCCCCCHHCCCCCEEEEECCCCCCCCCC-EEECCCCCCCCEEEEEHHCCCHHHHHHHHHHCCCCCCEECCCCC
T ss_conf 71576214675410014542378734410115543-12034254651246532004334789987613788642216774
Q ss_pred CEEEEEE
Q ss_conf 2799999
Q gi|254780638|r 332 DLYVQVQ 338 (384)
Q Consensus 332 dl~i~~~ 338 (384)
+|||+.-
T Consensus 449 vlIvcvp 455 (487)
T KOG2724 449 VLIVCVP 455 (487)
T ss_pred EEEEEEC
T ss_conf 5899708
No 85
>pfam03656 Pam16 Pam16. The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM). In Saccharomyces cerevisiae, Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane. Pam16 has a degenerate J domain. J-domain proteins play important regulatory roles as co-chaperones, recruiting Hsp70 partners and accelerating the ATP-hydrolysis step of the chaperone cycle. Pam16's J-like domain strongly interacts with Pam18's J domain, leading to a productive interaction of Pam18 with mtHsp70 at the mitochondria import channel. Pam18 stimulates the ATPase activity of mtHsp70.
Probab=60.84 E-value=8.9 Score=18.95 Aligned_cols=30 Identities=10% Similarity=0.249 Sum_probs=19.1
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 487187998899999999999999975699
Q gi|254780638|r 7 YQVLGIDRNATDRQLKTAFRSLAMKYHPDQ 36 (384)
Q Consensus 7 Y~iLGV~~~As~~eIKkAYrklA~k~HPDk 36 (384)
-.||+|.+.++.+||-+-|..|=-.=-|.+
T Consensus 61 ~qILNV~~~~~~EeI~k~y~~LF~~Ndk~k 90 (127)
T pfam03656 61 CQILNVEEDLNMEEVNKRYEHLFEVNDKSK 90 (127)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 988099999999999999999986379888
No 86
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=59.43 E-value=5.3 Score=20.58 Aligned_cols=57 Identities=11% Similarity=0.028 Sum_probs=25.9
Q ss_pred CCCCCCHHHHHHHHH--H----HHHHHCCCCCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 799889999999999--9----9999756998879-8799999999999876099899999877
Q gi|254780638|r 12 IDRNATDRQLKTAFR--S----LAMKYHPDQNRND-PEAKEKFAQISEAYEVLRDPQKRALYDQ 68 (384)
Q Consensus 12 V~~~As~~eIKkAYr--k----lA~k~HPDkn~~d-~~A~ekFkeI~eAYevLsD~~kR~~YD~ 68 (384)
++-.+..++||..|- | .+++--.+..+.+ +++..+..++.++.+.+-+..+...-++
T Consensus 18 a~~~~eLe~lR~~yLGKKG~Lt~llk~Lk~L~~EEKk~~Gk~iNelK~~Ie~~i~~k~~~l~~~ 81 (338)
T PRK00488 18 ASDLKALEALRVKYLGKKGELTELLKGLGKLPPEERKAAGALINEAKQAVQEALNARKAELEAA 81 (338)
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999949606999999876369999999999999999999999999999999999
No 87
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=59.10 E-value=14 Score=17.49 Aligned_cols=12 Identities=50% Similarity=0.880 Sum_probs=6.4
Q ss_pred HHHHHHHHHCCH
Q ss_conf 999998760998
Q gi|254780638|r 49 QISEAYEVLRDP 60 (384)
Q Consensus 49 eI~eAYevLsD~ 60 (384)
.+..||+.|.|.
T Consensus 6 LL~Ra~~~lp~~ 17 (201)
T PRK12336 6 LLNRAYSVLPDP 17 (201)
T ss_pred HHHHHHHHCCCC
T ss_conf 999999768875
No 88
>TIGR01139 cysK cysteine synthase A; InterPro: IPR005859 This model discriminates cysteine synthase A (CysK) and cysteine synthase B (CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded. Cysteine synthase (O-acetylserine (thiol)-lyase, 2.5.1.47 from EC) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysK differs from CysM in that it can also use sulphide instead of thiosulphate, to produce cysteine instead of cysteine thiosulphonate. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=56.06 E-value=15 Score=17.33 Aligned_cols=45 Identities=13% Similarity=0.361 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH-HHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 999992989999999999999-987288888100588999999887
Q gi|254780638|r 336 QVQVETPQKLNKRQRELLEEF-EQISSQDNNPQSTGFFARMKDFFD 380 (384)
Q Consensus 336 ~~~v~~P~~Ls~~qk~ll~~l-~~~~~~~~~~~~~~~~~~~~~~~~ 380 (384)
+|-+.+|+.+|.|-|.+|+.| +++--.+...+=+|=.+|.++..+
T Consensus 84 kliltMPetMS~ERr~lL~ayGAeLvLTpg~~GMkGAI~KA~Ei~~ 129 (312)
T TIGR01139 84 KLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAE 129 (312)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 4999867432689999998709658872812376667899999998
No 89
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=55.96 E-value=14 Score=17.53 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=22.6
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 9992989999999999999987288888
Q gi|254780638|r 338 QVETPQKLNKRQRELLEEFEQISSQDNN 365 (384)
Q Consensus 338 ~v~~P~~Ls~~qk~ll~~l~~~~~~~~~ 365 (384)
.+.||.+||..|+..+.+|++-..=...
T Consensus 19 el~Fp~sls~~eR~~vH~lA~~~GL~h~ 46 (60)
T cd02641 19 ELEFPPTLSSHDRLLVHELAEELGLRHE 46 (60)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 5788998998999999999998299764
No 90
>pfam03367 zf-ZPR1 ZPR1 zinc-finger domain. The zinc-finger protein ZPR1 is ubiquitous among eukaryotes. It is indeed known to be an essential protein in yeast. In quiescent cells, ZPR1 is localized to the cytoplasm. But in proliferating cells treated with EGF or with other mitogens, ZPR1 accumulates in the nucleolus. ZPR1 interacts with the cytoplasmic domain of the inactive EGF receptor (EGFR) and is thought to inhibit the basal protein tyrosine kinase activity of EGFR. This interaction is disrupted when cells are treated with EGF, though by themselves, inactive EGFRs are not sufficient to sequester ZPR1 to the cytoplasm. Upon stimulation by EGF, ZPR1 directly binds the eukaryotic translation elongation factor-1alpha (eEF-1alpha) to form ZPR1/eEF-1alpha complexes. These move into the nucleus, localising particularly at the nucleolus. Indeed, the interaction between ZPR1 and eEF-1alpha has been shown to be essential for normal cellular proliferation, and ZPR1 is thought to be involved
Probab=54.24 E-value=15 Score=17.23 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=24.3
Q ss_pred CCEEEEEECHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCEEEECCEECC
Q ss_conf 846999846665135424885167888231011685177887898881020
Q gi|254780638|r 273 DLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEGTQTGKQFRLKGKGMP 323 (384)
Q Consensus 273 dL~~~~~I~l~eal~G~~~~i~tldG~~i~i~i~~~~~~~~~~~i~g~G~p 323 (384)
||...+--| +. +++.||-| .+.+|++++.|.+-.|.|-=+.
T Consensus 65 DL~r~VvkS--~t---ati~IPEL-----~~eip~~~~~G~iTtVEG~L~~ 105 (160)
T pfam03367 65 DLNRDVVKS--ET---ASISIPEL-----GLEIPGPALGGRFTTVEGLLER 105 (160)
T ss_pred HHCCEEEEC--CC---EEEEEEEE-----EEEECCCCCCCEEEEHHHHHHH
T ss_conf 815617976--85---38996555-----2586698768689809999999
No 91
>KOG2217 consensus
Probab=51.77 E-value=18 Score=16.68 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=10.5
Q ss_pred CCEEEEEEEECCCCCCHHH
Q ss_conf 5279999999298999999
Q gi|254780638|r 331 GDLYVQVQVETPQKLNKRQ 349 (384)
Q Consensus 331 Gdl~i~~~v~~P~~Ls~~q 349 (384)
=|.-|.+.=.|=..|++.+
T Consensus 613 PdVkI~YvDE~Gr~LtpKE 631 (705)
T KOG2217 613 PDVKIEYVDEFGRELTPKE 631 (705)
T ss_pred CCCCEEEECCCCCCCCHHH
T ss_conf 8876477646575478899
No 92
>KOG0956 consensus
Probab=51.16 E-value=13 Score=17.71 Aligned_cols=17 Identities=12% Similarity=0.018 Sum_probs=8.2
Q ss_pred EEEEEECCCCCCEEEEC
Q ss_conf 15753103468428641
Q gi|254780638|r 255 LYIFISVKKHQFFKRDG 271 (384)
Q Consensus 255 l~i~i~~~~h~~f~r~g 271 (384)
..--+..+--..|.|++
T Consensus 518 ~sa~l~~qsvs~lqr~s 534 (900)
T KOG0956 518 SSAPLVSQSVSDLQRDS 534 (900)
T ss_pred CCCCCCCCCCCCCCCCC
T ss_conf 44566675522010134
No 93
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=51.08 E-value=16 Score=17.06 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=19.3
Q ss_pred CEEEEECCCCCCCCEEECCCCCCCCEEEECCEEC
Q ss_conf 2488516788823101168517788789888102
Q gi|254780638|r 289 GTFDVATLDATHSRVTIPEGTQTGKQFRLKGKGM 322 (384)
Q Consensus 289 ~~~~i~tldG~~i~i~i~~~~~~~~~~~i~g~G~ 322 (384)
+++.||-| .+.++++++.|.+-.|.|-=.
T Consensus 75 ati~IPEL-----~~ei~pg~~~G~vTTVEGlL~ 103 (160)
T smart00709 75 ATISIPEL-----DLEIPPGPLGGFITTVEGLLS 103 (160)
T ss_pred EEEEEEEE-----EEEECCCCCCCEEECHHHHHH
T ss_conf 58998543-----037669776867981899999
No 94
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=47.89 E-value=21 Score=16.26 Aligned_cols=37 Identities=30% Similarity=0.504 Sum_probs=22.6
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEECC
Q ss_conf 114850120367765678841664157531034684286414
Q gi|254780638|r 231 VDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGA 272 (384)
Q Consensus 231 ~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~~~~h~~f~r~g~ 272 (384)
+.+|+++.+.- |. .|+ .|+..|.-.+.+-|.|.-.|.
T Consensus 109 ~~~gq~~~~ak-GG---~GG-~GN~~Fks~~nrAP~~a~~G~ 145 (369)
T COG0536 109 TEHGQRFLVAK-GG---RGG-LGNAHFKSSVNRAPRFATPGE 145 (369)
T ss_pred CCCCCEEEEEC-CC---CCC-CCCHHHCCCCCCCCCCCCCCC
T ss_conf 13771999974-78---887-653211686667866578999
No 95
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=47.56 E-value=21 Score=16.23 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=21.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9999298999999999999998728888
Q gi|254780638|r 337 VQVETPQKLNKRQRELLEEFEQISSQDN 364 (384)
Q Consensus 337 ~~v~~P~~Ls~~qk~ll~~l~~~~~~~~ 364 (384)
-..+||..||.+++.++.++++-..=..
T Consensus 18 ~dL~F~~~ls~~eR~~iH~~a~~~gLks 45 (60)
T cd02640 18 RDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 5147698789899999999999919922
No 96
>KOG1885 consensus
Probab=46.86 E-value=17 Score=16.88 Aligned_cols=42 Identities=17% Similarity=0.396 Sum_probs=19.6
Q ss_pred EEEEECCC--CC-CHHHHHHHHHH-HHHCCCCCCCCC-CCHHHHHHH
Q ss_conf 99999298--99-99999999999-987288888100-588999999
Q gi|254780638|r 336 QVQVETPQ--KL-NKRQRELLEEF-EQISSQDNNPQS-TGFFARMKD 377 (384)
Q Consensus 336 ~~~v~~P~--~L-s~~qk~ll~~l-~~~~~~~~~~~~-~~~~~~~~~ 377 (384)
++.|.||. .| |++..++|..+ +...-+-..|+. ...++||-+
T Consensus 384 ~lgi~l~~~~~l~~~e~~~~L~~~~~~~~v~~p~p~t~arlLdKLvg 430 (560)
T KOG1885 384 ELGIKLPPGSTLHTEETRELLKSLCVDEAVECPPPRTTARLLDKLVG 430 (560)
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 95887898333575316899999877536678983108999999876
No 97
>pfam03589 Antiterm Antitermination protein.
Probab=45.84 E-value=9.6 Score=18.71 Aligned_cols=35 Identities=26% Similarity=0.579 Sum_probs=18.4
Q ss_pred CCCCCCCCCCCCCCCC----CEEEEEEEECCCCCCCCEE
Q ss_conf 1035531011210011----0012468616665655469
Q gi|254780638|r 169 MDCNICNGSGRVYTTA----QSFFSIERACSTCRGSGQI 203 (384)
Q Consensus 169 ~~C~~C~G~G~~~~~~----~~~~~~~~~C~~C~G~g~i 203 (384)
..|..|+|.|.+.-.. +..+.+-.+|..|.|.|..
T Consensus 6 ~~cr~c~g~g~ald~~~s~~q~G~pvfk~c~rc~g~G~s 44 (95)
T pfam03589 6 DSCRACAGDGAALGMKQSKAQLGVPVFKTCERCGGRGYS 44 (95)
T ss_pred CHHHCCCCCCEECCHHHHHHCCCCCEEEECCCCCCCCCC
T ss_conf 077708997446138888760697514347777897859
No 98
>pfam00591 Glycos_transf_3 Glycosyl transferase family, a/b domain. This family includes anthranilate phosphoribosyltransferase (TrpD), thymidine phosphorylase. All these proteins can transfer a phosphorylated ribose substrate.
Probab=45.43 E-value=16 Score=17.14 Aligned_cols=31 Identities=35% Similarity=0.619 Sum_probs=23.4
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHH------HHHHCC
Q ss_conf 4524871879988999999999999------999756
Q gi|254780638|r 4 ADFYQVLGIDRNATDRQLKTAFRSL------AMKYHP 34 (384)
Q Consensus 4 ~DyY~iLGV~~~As~~eIKkAYrkl------A~k~HP 34 (384)
-|..+-|||+-+.+.+++++.+.+. |-.|||
T Consensus 50 aDvLe~lGi~i~~~~~~~~~~l~~~g~~FlfAp~~hP 86 (254)
T pfam00591 50 ADVLEALGINLELTPEQVRKLLDEVGVGFLFAPNYHP 86 (254)
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHCCEEEECCHHHCH
T ss_conf 9999874997679999999999983947864112098
No 99
>pfam04216 FdhE Protein involved in formate dehydrogenase formation. The function of these proteins is unknown. They may possibly be involved in the formation of formate dehydrogenase.
Probab=45.06 E-value=21 Score=16.35 Aligned_cols=48 Identities=15% Similarity=0.320 Sum_probs=27.0
Q ss_pred CCCCCCCCCCCCCCCCCCEEE-EE-EEECCCCCCCCEEEECCCCCCCCCC
Q ss_conf 210355310112100110012-46-8616665655469835412001121
Q gi|254780638|r 168 PMDCNICNGSGRVYTTAQSFF-SI-ERACSTCRGSGQIIPHPCSKCHGQG 215 (384)
Q Consensus 168 ~~~C~~C~G~G~~~~~~~~~~-~~-~~~C~~C~G~g~i~~~~c~~C~G~g 215 (384)
...||+|.+.........+.- +. --.|..|.-.=..++..|+.|....
T Consensus 166 ~~~CPvCGs~P~~s~~~~~~~~G~Ryl~Cs~C~teW~~~R~~C~~Cg~~~ 215 (283)
T pfam04216 166 RGLCPVCGSAPVASVIRGGGAQGLRYLHCSLCETEWHFVRVKCTNCGSTK 215 (283)
T ss_pred CCCCCCCCCCCHHHEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 89699999810001131378788368865888783242265479999999
No 100
>pfam04053 Coatomer_WDAD Coatomer WD associated region. This region is composed of WD40 repeats.
Probab=45.04 E-value=13 Score=17.67 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=13.1
Q ss_pred CCCHHHHHCCCCCCCEEECCCC
Q ss_conf 0000011001148501203677
Q gi|254780638|r 222 LLSVNVPPGVDDGTRIRLSGEG 243 (384)
Q Consensus 222 ~~~I~Ip~G~~~G~~i~~~g~G 243 (384)
++++.|.-|+=+|+.+.|....
T Consensus 188 Ei~e~VkSg~W~~dvFiYTT~n 209 (435)
T pfam04053 188 EVTERVKSGAWDGDVFIYTTLN 209 (435)
T ss_pred ECCCEEEEEEEECCEEEEECCC
T ss_conf 2254478748977899997277
No 101
>pfam12434 Malate_DH Malate dehydrogenase enzyme. This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with pfam00390, pfam03949, pfam01515. There is a conserved AAL sequence motif. There is a single completely conserved residue R that may be functionally important. Malate dehydrogenase is one of the enzymes involved in the citric acid cycle in mitochondria. It converts malate to oxaloacetate using NAD as a cofactor.
Probab=43.99 E-value=20 Score=16.45 Aligned_cols=16 Identities=38% Similarity=0.698 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999999999975
Q gi|254780638|r 18 DRQLKTAFRSLAMKYH 33 (384)
Q Consensus 18 ~~eIKkAYrklA~k~H 33 (384)
.++-|.|-||.|+.||
T Consensus 10 k~qqraalRkAALeYH 25 (28)
T pfam12434 10 KEQQRAALRKAALEYH 25 (28)
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 8999999999988861
No 102
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating; InterPro: IPR006113 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) , . Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved . The protein is a homodimer in which the monomers act independently : each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet . NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket . This model does not specify whether the cofactor is NADP only, NAD only, or both.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt.
Probab=43.81 E-value=11 Score=18.24 Aligned_cols=12 Identities=42% Similarity=0.866 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999987609
Q gi|254780638|r 47 FAQISEAYEVLR 58 (384)
Q Consensus 47 FkeI~eAYevLs 58 (384)
+|.|+|||++|.
T Consensus 195 MQLI~EAY~~lK 206 (480)
T TIGR00873 195 MQLIAEAYDILK 206 (480)
T ss_pred HHHHHHHHHHHH
T ss_conf 989999999998
No 103
>PRK05582 DNA topoisomerase I; Validated
Probab=43.52 E-value=14 Score=17.54 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=13.4
Q ss_pred CHHHHCCCCC---------CCHHHHHHHHH
Q ss_conf 2487187998---------89999999999
Q gi|254780638|r 6 FYQVLGIDRN---------ATDRQLKTAFR 26 (384)
Q Consensus 6 yY~iLGV~~~---------As~~eIKkAYr 26 (384)
.|++|+..+. -|.+.|++|+.
T Consensus 93 i~~~l~~~~~~~~Ri~f~eiT~~aI~~Al~ 122 (692)
T PRK05582 93 VADALKKDENELPRIVFNEITKNAIKNALK 122 (692)
T ss_pred HHHHHCCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 999967888873388983799999999996
No 104
>pfam02319 E2F_TDP E2F/DP family winged-helix DNA-binding domain. This family contains the transcription factor E2F and its dimerization partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
Probab=42.51 E-value=15 Score=17.28 Aligned_cols=44 Identities=32% Similarity=0.358 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 8899999999999999975699887987999999999998760998999998772
Q gi|254780638|r 15 NATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQG 69 (384)
Q Consensus 15 ~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~ 69 (384)
+.|...+-+.|-.|-... ||.- -.+++|-..|.-.+||++||-.
T Consensus 3 ekSL~~Lt~kF~~l~~~~-~~~~----------i~L~~aa~~L~v~~kRRiYDi~ 46 (67)
T pfam02319 3 EKSLGLLTQKFLKLCEKS-PDGI----------TDLNEAAKELDVKQKRRIYDIT 46 (67)
T ss_pred CCCHHHHHHHHHHHHHHC-CCCE----------EEHHHHHHHHCCCCHHHHHHHH
T ss_conf 023999999999999869-9987----------6699999995874023477899
No 105
>PRK12296 obgE GTPase ObgE; Reviewed
Probab=42.08 E-value=26 Score=15.66 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=7.0
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 222122222112322
Q gi|254780638|r 118 SSTGEAGADLRYNLE 132 (384)
Q Consensus 118 ~~~~~~~~d~~~~~~ 132 (384)
...+..+.|+.+.+.
T Consensus 78 ~~~G~~G~Dl~i~VP 92 (495)
T PRK12296 78 NRDGAAGEDLVLPVP 92 (495)
T ss_pred CCCCCCCCCEEEECC
T ss_conf 895999895799369
No 106
>pfam09332 Mcm10 Mcm10 replication factor. Mcm10 is a eukaryotic DNA replication factor that regulates the stability and chromatin association of DNA polymerase alpha.
Probab=42.06 E-value=26 Score=15.65 Aligned_cols=81 Identities=19% Similarity=0.345 Sum_probs=41.1
Q ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE--ECCCCCCCCEEE----ECCCCCCCCCCEECCCCCC
Q ss_conf 4310002343225788542103553101121001100124686--166656554698----3541200112100011100
Q gi|254780638|r 150 TAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTAQSFFSIER--ACSTCRGSGQII----PHPCSKCHGQGRVSEEKLL 223 (384)
Q Consensus 150 ~~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~--~C~~C~G~g~i~----~~~c~~C~G~g~~~~~~~~ 223 (384)
+.+.|.+|..+.- ..-..|.-.......... ..+ .|..|+-+...+ ...|..|.+... ++.-
T Consensus 253 k~V~C~~CkYt~f------~~se~Ck~e~H~l~~~da---~KRFFkC~dC~~Rtisl~r~P~~~C~~Cg~~kw---eR~~ 320 (346)
T pfam09332 253 KAVTCKQCKYTAF------KAADRCVEENHDLHWHDA---VKRFFKCPDCGNRTISLDRLPKKHCKNCGLFKW---ERDA 320 (346)
T ss_pred EEEEECCCCCEEE------CHHHHHHHCCCCEEEEEC---EEEEEECCCCCCCEEEEECCCCCCCCCCCCCCE---EEHH
T ss_conf 5898235666132------626778860895178603---332245688787445621076222323677511---0011
Q ss_pred CHHHHHCCCCCCCEEECCC
Q ss_conf 0001100114850120367
Q gi|254780638|r 224 SVNVPPGVDDGTRIRLSGE 242 (384)
Q Consensus 224 ~I~Ip~G~~~G~~i~~~g~ 242 (384)
.+.=..|...|..+-++|.
T Consensus 321 M~~Ekkg~~~~e~Ll~RG~ 339 (346)
T pfam09332 321 MLKEKKGKIGGETLLPRGE 339 (346)
T ss_pred HHHHCCCCCCCCEECCCCC
T ss_conf 3433066768744214665
No 107
>PRK07220 DNA topoisomerase I; Validated
Probab=41.26 E-value=22 Score=16.09 Aligned_cols=19 Identities=16% Similarity=0.387 Sum_probs=9.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCC
Q ss_conf 989999999999999987288
Q gi|254780638|r 342 PQKLNKRQRELLEEFEQISSQ 362 (384)
Q Consensus 342 P~~Ls~~qk~ll~~l~~~~~~ 362 (384)
|...|+. .||+.|++.--.
T Consensus 466 P~ryTEa--sLIk~ME~~GIG 484 (740)
T PRK07220 466 PGRYGQG--RLIKLMEDLGLG 484 (740)
T ss_pred CCCCCHH--HHHHHHHHCCCC
T ss_conf 9888989--999999738998
No 108
>pfam09538 FYDLN_acid Protein of unknown function (FYDLN_acid). Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=40.89 E-value=15 Score=17.33 Aligned_cols=28 Identities=25% Similarity=0.576 Sum_probs=16.1
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5443100023432257885421035531
Q gi|254780638|r 148 FPTAVKCSTCSGSGAKPGTNPMDCNICN 175 (384)
Q Consensus 148 ~~~~~~C~~C~G~g~~~~~~~~~C~~C~ 175 (384)
+...+.|+.|...-+--...|..||.|.
T Consensus 6 ~g~kr~c~~c~~~fydl~k~p~~cp~cg 33 (104)
T pfam09538 6 WGTKRTCPTCGKRFYDLNKDPIVCPKCG 33 (104)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1676547888882112798987189988
No 109
>PRK08620 DNA topoisomerase III; Provisional
Probab=40.59 E-value=18 Score=16.80 Aligned_cols=13 Identities=23% Similarity=0.521 Sum_probs=5.0
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 0588999999887
Q gi|254780638|r 368 STGFFARMKDFFD 380 (384)
Q Consensus 368 ~~~~~~~~~~~~~ 380 (384)
++.|+..+++++.
T Consensus 577 ~~~fi~~~~~~~~ 589 (726)
T PRK08620 577 KKTFINEMKNYTK 589 (726)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 110
>PRK11712 ribonuclease G; Provisional
Probab=40.13 E-value=9.3 Score=18.83 Aligned_cols=24 Identities=25% Similarity=0.595 Sum_probs=13.3
Q ss_pred ECCCCCCCCCCEECCCCCCCHHHH
Q ss_conf 354120011210001110000011
Q gi|254780638|r 205 PHPCSKCHGQGRVSEEKLLSVNVP 228 (384)
Q Consensus 205 ~~~c~~C~G~g~~~~~~~~~I~Ip 228 (384)
..+|+.|+|.|.++..+++...|-
T Consensus 402 ~~~Cp~C~G~G~v~s~et~~~~i~ 425 (489)
T PRK11712 402 CGECPTCHGRGTVKTVETVCYEIM 425 (489)
T ss_pred CCCCCCCCCEEEECCHHHHHHHHH
T ss_conf 786998898726558999999999
No 111
>pfam03803 Scramblase Scramblase. Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury.
Probab=39.61 E-value=28 Score=15.40 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999992989999999999999
Q gi|254780638|r 336 QVQVETPQKLNKRQRELLEEF 356 (384)
Q Consensus 336 ~~~v~~P~~Ls~~qk~ll~~l 356 (384)
.|.|.||..||.++|++|-..
T Consensus 192 ~f~i~FP~dl~v~~KAllLga 212 (223)
T pfam03803 192 TYVVRFPLDLDVKLKAVLLGA 212 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 069987999998899999999
No 112
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family; InterPro: IPR011976 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This family consists of probable oligoendopeptidases belonging to MEROPS peptidase family M3, subfamily M3B (clan MA(E)). The family is related to lactococcal PepF and group B streptococcal PepB (IPR004438 from INTERPRO) but in a distinct clade with considerable sequence differences not only to IPR004438 from INTERPRO but also to IPR011977 from INTERPRO. Likely substrates are small peptides and not whole proteins, as with PepF, but members are not characterised and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family..
Probab=39.51 E-value=28 Score=15.39 Aligned_cols=123 Identities=16% Similarity=0.204 Sum_probs=64.2
Q ss_pred CCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCC--EEEECCCCEEEE-EECHHHHCCCCEEEEECCCCC
Q ss_conf 00001100114850120367765678841664157531034684--286414846999-846665135424885167888
Q gi|254780638|r 223 LSVNVPPGVDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQF--FKRDGADLYCTV-PISIVTVAMGGTFDVATLDAT 299 (384)
Q Consensus 223 ~~I~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~~~~h~~--f~r~g~dL~~~~-~I~l~eal~G~~~~i~tldG~ 299 (384)
+...+| +.+...+|.+- ++.+||+.+.+++.=|.. |.-.-++++..- .++..-|=+ .+.++..|-=.
T Consensus 318 yC~~Lp---~~~~pFiFsNf------ngt~~Di~~l~HE~GHafh~Y~~~k~~~~~~Y~~~~~E~AEl-~SMsmEll~~~ 387 (553)
T TIGR02289 318 YCTYLP---KYKAPFIFSNF------NGTSGDIDVLTHEAGHAFHVYESRKNDLLPEYRWPTYEAAEL-ASMSMELLSMP 387 (553)
T ss_pred CCCCCC---CCCCCEEEECC------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH-HHHHHHHHHHH
T ss_conf 315355---66786078647------888313678888656889766642467774346864679987-76428886656
Q ss_pred CCCEEECCCCCCCCEEEECCEE-------CCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCC
Q ss_conf 2310116851778878988810-------2006898865279999999298999999999999998728
Q gi|254780638|r 300 HSRVTIPEGTQTGKQFRLKGKG-------MPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQISS 361 (384)
Q Consensus 300 ~i~i~i~~~~~~~~~~~i~g~G-------~p~~~~~~rGdl~i~~~v~~P~~Ls~~qk~ll~~l~~~~~ 361 (384)
.+..== .++.+....+=.- ||. +--+|.+=|+.-.-|+.=.++-++.+.+|..=..
T Consensus 388 ~~~~Fy---~d~~d~~k~k~~~l~~aL~fLp~---~~~vD~FQHwvYeNP~~TP~ER~~~y~~l~k~Y~ 450 (553)
T TIGR02289 388 WMDLFY---TDEEDLKKAKISHLKGALSFLPY---GVIVDHFQHWVYENPNHTPEERDEKYAELEKRYQ 450 (553)
T ss_pred HHHHHC---CCHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 676420---79546758999999999999988---8885031241444888885789999999997317
No 113
>cd07356 HN_L-whirlin_R1_like First harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains. This subgroup contains the first of two harmonin_N_like domains of the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. This first harmonin_N_like domain precedes PDZ1, and is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. This first harmonin_N_like domain has been assayed for interaction with the cytoplasmic domain of cadherin 23 (a component of the Usher network and an interacting partner of the harmonin N-domain), however no interaction could be detected. Th
Probab=39.11 E-value=28 Score=15.34 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=29.0
Q ss_pred HHHHHH-HHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 999999-999756998879879999999999987609989999987724
Q gi|254780638|r 23 TAFRSL-AMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRALYDQGG 70 (384)
Q Consensus 23 kAYrkl-A~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~~G 70 (384)
++|-+. -..||-++|- +.-|.+-+-||-+|+||+++-..+
T Consensus 21 r~~f~~~Ln~Y~~~RNV--------~~Lv~sL~~vLd~P~Krqllp~Lr 61 (78)
T cd07356 21 REEFIHCLNDYHAKRNV--------YDLVQSLKVVLDTPEKRQLLPLLR 61 (78)
T ss_pred HHHHHHHHHHHHHCCCH--------HHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999998620549--------999999999808876878999999
No 114
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=38.80 E-value=29 Score=15.31 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=7.7
Q ss_pred CCCCCCCCCCCCCCHHC
Q ss_conf 22221123222100000
Q gi|254780638|r 123 AGADLRYNLEISLEEAF 139 (384)
Q Consensus 123 ~~~d~~~~~~islee~~ 139 (384)
..+|+.+.+++--+.+|
T Consensus 142 ~~Pdv~i~iEIr~~~ay 158 (383)
T COG0301 142 KNPDVEIHIEIREDKAY 158 (383)
T ss_pred CCCCEEEEEEEECCEEE
T ss_conf 79976999999548279
No 115
>KOG1912 consensus
Probab=37.89 E-value=30 Score=15.22 Aligned_cols=20 Identities=20% Similarity=0.057 Sum_probs=8.8
Q ss_pred CCCCEEEEEECHHHHCCCCE
Q ss_conf 14846999846665135424
Q gi|254780638|r 271 GADLYCTVPISIVTVAMGGT 290 (384)
Q Consensus 271 g~dL~~~~~I~l~eal~G~~ 290 (384)
+.-|..+...++...+-|..
T Consensus 692 ~~~lwdtk~~~lV~siag~d 711 (1062)
T KOG1912 692 WLPLWDTKADTLVLSIAGMD 711 (1062)
T ss_pred CCEECCCCCCEEEEEECCCC
T ss_conf 62101355440145421577
No 116
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=37.09 E-value=30 Score=15.13 Aligned_cols=30 Identities=10% Similarity=0.204 Sum_probs=24.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 999992989999999999999987288888
Q gi|254780638|r 336 QVQVETPQKLNKRQRELLEEFEQISSQDNN 365 (384)
Q Consensus 336 ~~~v~~P~~Ls~~qk~ll~~l~~~~~~~~~ 365 (384)
...+.||.+||+.|+..+..++.-.+=...
T Consensus 17 r~eL~fp~~lsp~qRrivh~La~~lGL~h~ 46 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 216975999999999999999988199204
No 117
>PRK10811 rne ribonuclease E; Reviewed
Probab=36.50 E-value=12 Score=18.01 Aligned_cols=18 Identities=6% Similarity=0.039 Sum_probs=8.0
Q ss_pred CCCHHHHHHHHHHHHHHH
Q ss_conf 889999999999999997
Q gi|254780638|r 15 NATDRQLKTAFRSLAMKY 32 (384)
Q Consensus 15 ~As~~eIKkAYrklA~k~ 32 (384)
+++.+||+.-+..|-..|
T Consensus 174 g~s~eeL~~Dl~~Ll~~W 191 (1063)
T PRK10811 174 GKSAEALQWDLSFRLKHW 191 (1063)
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 999999999999999999
No 118
>pfam01018 GTP1_OBG GTP1/OBG. The N-terminal domain of the Spo0B-associated GTP-binding protein has the OBG fold, which is formed by three glycine-rich regions inserted into a small 8-stranded beta-sandwich these regions form six left-handed collagen-like helices packed and H-bonded together.
Probab=36.17 E-value=31 Score=15.03 Aligned_cols=14 Identities=7% Similarity=0.024 Sum_probs=4.6
Q ss_pred CEEEEEECCCCCCE
Q ss_conf 41575310346842
Q gi|254780638|r 254 DLYIFISVKKHQFF 267 (384)
Q Consensus 254 Dl~i~i~~~~h~~f 267 (384)
+..|.=...+-|.|
T Consensus 125 N~~Fkss~n~aP~~ 138 (156)
T pfam01018 125 NAAFKSPVNRAPGY 138 (156)
T ss_pred CCCCCCCCCCCCCC
T ss_conf 64004777889852
No 119
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=36.12 E-value=31 Score=15.03 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=22.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 9992989999999999999987288888
Q gi|254780638|r 338 QVETPQKLNKRQRELLEEFEQISSQDNN 365 (384)
Q Consensus 338 ~v~~P~~Ls~~qk~ll~~l~~~~~~~~~ 365 (384)
...||..||.+++.++.++++-..=...
T Consensus 18 el~Fp~slt~~eRa~iH~la~k~GLksk 45 (59)
T cd06007 18 EYEFPSSLTNHERAVIHRLCRKLGLKSK 45 (59)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 6887997887899999999999098104
No 120
>TIGR00398 metG methionyl-tRNA synthetase; InterPro: IPR002304 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Methionyl-tRNA synthetase (6.1.1.10 from EC) is an alpha 2 dimer that belongs to class Ia. In some species (archaea, eubacteria and eukaryota) a coding sequence, similar to the C-term end of MetRS, is present as an independent gene which is a tRNA binding domain as a dimer. In eubacteria, MetRS can also be splitted in two sub-classes corresponding to the presence of one or two CXXC domain specific to zinc binding. The crystal structures of a number of methionyl-tRNA synthases are known , , .; GO: 0000166 nucleotide binding, 0004825 methionine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006431 methionyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=36.04 E-value=25 Score=15.73 Aligned_cols=94 Identities=19% Similarity=0.275 Sum_probs=44.3
Q ss_pred CCCCCEEEECCCCEEEEEECHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCEEEECCEECCCCCCCCCCCEEEEEEEEC
Q ss_conf 34684286414846999846665135424885167888231011685177887898881020068988652799999992
Q gi|254780638|r 262 KKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVET 341 (384)
Q Consensus 262 ~~h~~f~r~g~dL~~~~~I~l~eal~G~~~~i~tldG~~i~i~i~~~~~~~~~~~i~g~G~p~~~~~~rGdl~i~~~v~~ 341 (384)
+.+..+..-|-|+++-+.|=..-.|.|..= ++++|.-+-.+--+.+.|.=| +++ +|+ |+.
T Consensus 296 ~~~~~~HfIGKDI~~FH~iyWPa~L~~~~e----------N~~lP~q~~~hGyl~~eG~KM--SKS--~G~------vv~ 355 (573)
T TIGR00398 296 EDAELIHFIGKDIVRFHTIYWPAMLMGLGE----------NLPLPTQVFAHGYLTVEGQKM--SKS--LGN------VVD 355 (573)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCC----------HHHHHHHHEEEEEEEECCEEE--CCC--CCC------EEC
T ss_conf 650278884241202033344588851121----------002121324301688478443--232--475------323
Q ss_pred CCC-CCHH--HHHHHHHH--HH-HCCCCCCCCCCCHHHHH
Q ss_conf 989-9999--99999999--98-72888881005889999
Q gi|254780638|r 342 PQK-LNKR--QRELLEEF--EQ-ISSQDNNPQSTGFFARM 375 (384)
Q Consensus 342 P~~-Ls~~--qk~ll~~l--~~-~~~~~~~~~~~~~~~~~ 375 (384)
|.. +-+. -.+.||=+ ++ -...+.+-+.+.|.+|+
T Consensus 356 ~~~~~~~~~~g~D~lRYYl~~~~~~~~D~~F~~~~f~~r~ 395 (573)
T TIGR00398 356 PEDDLLARGYGADILRYYLLKEVPLGKDGDFSWEDFVERV 395 (573)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 2178764478805788899864243447656889999997
No 121
>pfam09862 DUF2089 Protein of unknown function(DUF2089). This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=35.27 E-value=21 Score=16.33 Aligned_cols=19 Identities=32% Similarity=0.765 Sum_probs=9.7
Q ss_pred CCCCCCCCEEEECCCCCCC
Q ss_conf 6665655469835412001
Q gi|254780638|r 194 CSTCRGSGQIIPHPCSKCH 212 (384)
Q Consensus 194 C~~C~G~g~i~~~~c~~C~ 212 (384)
|+.|.+.-.|.+-.|+.|+
T Consensus 1 CPvCg~~l~Vt~L~C~~C~ 19 (113)
T pfam09862 1 CPVCGEELTVTRLECSKCG 19 (113)
T ss_pred CCCCCCCEEEEEEECCCCC
T ss_conf 9989981389998848998
No 122
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=34.73 E-value=32 Score=15.00 Aligned_cols=54 Identities=24% Similarity=0.251 Sum_probs=31.8
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHH--HHHHCCHHHHH
Q ss_conf 718799889999999999999997569988-798799999999999--87609989999
Q gi|254780638|r 9 VLGIDRNATDRQLKTAFRSLAMKYHPDQNR-NDPEAKEKFAQISEA--YEVLRDPQKRA 64 (384)
Q Consensus 9 iLGV~~~As~~eIKkAYrklA~k~HPDkn~-~d~~A~ekFkeI~eA--YevLsD~~kR~ 64 (384)
-|-|+++||..+||.---+.|.+| |==+- .|+. .-.|.-||.. .|.|-|+.+|-
T Consensus 3 ~l~v~~~aTi~~IK~~Lw~~A~~~-PL~~ll~d~~-~Y~f~~In~~ae~Eel~DEtrRL 59 (78)
T smart00143 3 TLRVLREATLSTIKHELFKQARKM-PLGQLLQDES-SYIFVSVNQTAEIEEFFDETRRL 59 (78)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHC-CHHHHHCCCC-CEEEEEECCCCCCCCCCCCCHHC
T ss_conf 264574141999999999999868-7788855944-13999834665031000220210
No 123
>TIGR02892 spore_yabP sporulation protein YabP; InterPro: IPR012504 Check - See: .
Probab=34.48 E-value=33 Score=14.85 Aligned_cols=71 Identities=18% Similarity=0.405 Sum_probs=48.1
Q ss_pred CEEEEECCCCCCCCEEECCCCCCCCEEEECCEECCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 24885167888231011685177887898881020068-98865279999999298999999999999998728888810
Q gi|254780638|r 289 GTFDVATLDATHSRVTIPEGTQTGKQFRLKGKGMPVIN-SGRKGDLYVQVQVETPQKLNKRQRELLEEFEQISSQDNNPQ 367 (384)
Q Consensus 289 ~~~~i~tldG~~i~i~i~~~~~~~~~~~i~g~G~p~~~-~~~rGdl~i~~~v~~P~~Ls~~qk~ll~~l~~~~~~~~~~~ 367 (384)
+...|..+|.+.+.++..-|. +.|+|+.|.+.+ .=+.|++.|.=.|.==+.+++.|+ .....+
T Consensus 15 GV~~V~SFd~eei~LeT~~G~-----L~ikG~~L~~~~LDv~~G~v~i~G~i~~~~Y~~Pr~~-----------~~~~~k 78 (88)
T TIGR02892 15 GVKEVISFDDEEILLETVMGF-----LTIKGQELKMNKLDVENGQVIIKGFISELTYLEPREK-----------EESKEK 78 (88)
T ss_pred CEEEEECCCCCEEEEEECCCE-----EEEECCCCEECCCCCCCCEEEEEEEEEEEECCCCCCC-----------CCCCCC
T ss_conf 115532148878998631455-----8882276300473055567998778756306772235-----------632102
Q ss_pred CCCHHHHH
Q ss_conf 05889999
Q gi|254780638|r 368 STGFFARM 375 (384)
Q Consensus 368 ~~~~~~~~ 375 (384)
.++||+||
T Consensus 79 ~~~~~srL 86 (88)
T TIGR02892 79 GKGFFSRL 86 (88)
T ss_pred CCCEEEEC
T ss_conf 46703330
No 124
>KOG0049 consensus
Probab=34.06 E-value=34 Score=14.80 Aligned_cols=46 Identities=20% Similarity=0.343 Sum_probs=33.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHHCCH
Q ss_conf 79988999999999999999756998879--87999999999998760998
Q gi|254780638|r 12 IDRNATDRQLKTAFRSLAMKYHPDQNRND--PEAKEKFAQISEAYEVLRDP 60 (384)
Q Consensus 12 V~~~As~~eIKkAYrklA~k~HPDkn~~d--~~A~ekFkeI~eAYevLsD~ 60 (384)
..-.-|..+|++-|+.- .|||.|+.+ +|-+|+.+.|.+|-.-++=+
T Consensus 230 fEgsrS~~~~~~~W~n~---l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~ 277 (939)
T KOG0049 230 FEGSRSEWAVKSKWYNE---LNPKWNKEHWSNEEVEKLKALAEAPKFVSWP 277 (939)
T ss_pred CCCCCCHHHHHHHHHHH---CCCCCCHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 55667889999998651---3876323106858889999998520335279
No 125
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=33.97 E-value=34 Score=14.79 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=28.5
Q ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 88652799999992989999999999999987
Q gi|254780638|r 328 GRKGDLYVQVQVETPQKLNKRQRELLEEFEQI 359 (384)
Q Consensus 328 ~~rGdl~i~~~v~~P~~Ls~~qk~ll~~l~~~ 359 (384)
-.+|+-++.|....|..+++.|+.++.++.+.
T Consensus 107 i~~g~~vLifT~Tt~~~ftp~q~~~~~~~I~S 138 (147)
T COG5435 107 IERGDTVLIFTLTTPGEFTPSQKKAWEQVIQS 138 (147)
T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 21498389999527988897899999999975
No 126
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=33.69 E-value=33 Score=14.90 Aligned_cols=39 Identities=10% Similarity=0.207 Sum_probs=30.0
Q ss_pred CHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 2487187998899999999999999975699887987999999999
Q gi|254780638|r 6 FYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQIS 51 (384)
Q Consensus 6 yY~iLGV~~~As~~eIKkAYrklA~k~HPDkn~~d~~A~ekFkeI~ 51 (384)
-|.|+..+++-+.+++|+|+++.-.+|=.= +.-+|+||+
T Consensus 8 ty~i~~~~~~l~~~~~r~~i~~Af~~Ws~v-------~~l~F~ev~ 46 (157)
T cd04278 8 TYRILNYPPDLPRDDVRRAIARAFRVWSDV-------TPLTFREVT 46 (157)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCC-------CCCCEEEEC
T ss_conf 899842799989999999999999998664-------785559815
No 127
>PRK12298 obgE GTPase ObgE; Reviewed
Probab=33.12 E-value=35 Score=14.70 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=16.4
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEE
Q ss_conf 14850120367765678841664157531034684286
Q gi|254780638|r 232 DDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKR 269 (384)
Q Consensus 232 ~~G~~i~~~g~G~~~~~~~~~GDl~i~i~~~~h~~f~r 269 (384)
.+|+++.+..-| .|+ .|+..|.-.....|.|.-
T Consensus 110 ~~g~~~lva~GG----~GG-~GN~~Fkss~n~aPr~~~ 142 (380)
T PRK12298 110 EHGQRLLVAKGG----WHG-LGNTRFKSSVNRAPRQKT 142 (380)
T ss_pred CCCCEEEEECCC----CCC-CCCCCCCCCCCCCCCCCC
T ss_conf 699589997578----787-675212465668984446
No 128
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=32.95 E-value=6.6 Score=19.89 Aligned_cols=49 Identities=22% Similarity=0.400 Sum_probs=30.1
Q ss_pred HHHHHHHHHHCCCCCC------C------C----HHHHHHHHHHH--HHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 9999999997569988------7------9----87999999999--99876099899999877248765
Q gi|254780638|r 23 TAFRSLAMKYHPDQNR------N------D----PEAKEKFAQIS--EAYEVLRDPQKRALYDQGGHEAL 74 (384)
Q Consensus 23 kAYrklA~k~HPDkn~------~------d----~~A~ekFkeI~--eAYevLsD~~kR~~YD~~G~~~~ 74 (384)
+|+. .+-|||||-. + + +-=+.+|.+|| ||++.+.+. -+++-|+||.++.
T Consensus 35 ~~~~--~~vy~pdRl~~PmkR~G~~~~~~~~~~~~RG~g~f~rISWDEAld~IA~k-l~~i~~~~G~~sv 101 (609)
T cd02769 35 DGVP--DAVYSPTRIKYPMVRRGWLEKGPGSDRSLRGKEEFVRVSWDEALDLVAAE-LKRVRKTYGNEAI 101 (609)
T ss_pred HCCH--HHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHH-HHHHHHHHCCCEE
T ss_conf 1418--75149003368868622544566666566778987983599999999999-9999998598579
No 129
>pfam09606 Med15 ARC105 or Med15 subunit of Mediator complex non-fungal. The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.
Probab=32.22 E-value=28 Score=15.39 Aligned_cols=48 Identities=15% Similarity=0.357 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHCCCC-----CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 9999999999975699-----88798799999999999876099899999877
Q gi|254780638|r 21 LKTAFRSLAMKYHPDQ-----NRNDPEAKEKFAQISEAYEVLRDPQKRALYDQ 68 (384)
Q Consensus 21 IKkAYrklA~k~HPDk-----n~~d~~A~ekFkeI~eAYevLsD~~kR~~YD~ 68 (384)
-+..||+|++=--|=| =.+|++-.++..+...-.|||+||.||..++.
T Consensus 508 y~ek~kqlskYiePLrrmi~k~~~~~~~~~~l~kMk~ll~iL~~p~~r~pl~t 560 (768)
T pfam09606 508 YREKYKQLSKYIEPLRRMIAKIDNDEGRIKDLSKMKSLLDILSNPSSRCPLET 560 (768)
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 99999875324439999998455787525677778899988628421454155
No 130
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic; InterPro: IPR010109 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site . The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH . This entry includes both mitochondrial and peroxisomal forms of citrate synthase. Peroxisomal forms of the enzyme, recognized by the C-terminal targeting motif SKL, act in the glyoxylate cycle. Eukaryotic homologs include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans (Emericella nidulans).; GO: 0004108 citrate (Si)-synthase activity, 0044262 cellular carbohydrate metabolic process.
Probab=31.09 E-value=32 Score=14.99 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=10.4
Q ss_pred CCCHHHHHCCCCCCCEEECCCCCC
Q ss_conf 000001100114850120367765
Q gi|254780638|r 222 LLSVNVPPGVDDGTRIRLSGEGGA 245 (384)
Q Consensus 222 ~~~I~Ip~G~~~G~~i~~~g~G~~ 245 (384)
.++=-|=+-..+|.+ ++|.||-
T Consensus 300 qlKdy~WktLnsG~V--VPGYGHa 321 (430)
T TIGR01793 300 QLKDYVWKTLNSGKV--VPGYGHA 321 (430)
T ss_pred HHHHHHHHHHCCCCE--ECCCCCC
T ss_conf 789999976058954--2576652
No 131
>pfam02192 PI3K_p85B PI3-kinase family, p85-binding domain.
Probab=31.01 E-value=38 Score=14.46 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=21.6
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8718799889999999999999997
Q gi|254780638|r 8 QVLGIDRNATDRQLKTAFRSLAMKY 32 (384)
Q Consensus 8 ~iLGV~~~As~~eIKkAYrklA~k~ 32 (384)
-.|-|+++||..|||.---+.|.+|
T Consensus 2 i~l~v~~~aTl~eIK~~Lw~eA~~~ 26 (78)
T pfam02192 2 LNLEVSREATLSDIKQELWKEAKSY 26 (78)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 4375475264999999999999869
No 132
>PRK05978 hypothetical protein; Provisional
Probab=30.77 E-value=15 Score=17.39 Aligned_cols=25 Identities=32% Similarity=0.979 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEECCCCC
Q ss_conf 03553101121001100124686166656
Q gi|254780638|r 170 DCNICNGSGRVYTTAQSFFSIERACSTCR 198 (384)
Q Consensus 170 ~C~~C~G~G~~~~~~~~~~~~~~~C~~C~ 198 (384)
.||.| |.|+.. .+|+.+...|+.|.
T Consensus 36 rCP~C-G~G~LF---~gyLkv~~~C~~CG 60 (149)
T PRK05978 36 RCPHC-GEGKLF---RAFLKPVDHCSACG 60 (149)
T ss_pred CCCCC-CCCHHH---HHHCCCCCCCHHCC
T ss_conf 59899-994156---42166765501308
No 133
>KOG3803 consensus
Probab=30.20 E-value=20 Score=16.42 Aligned_cols=10 Identities=40% Similarity=0.909 Sum_probs=5.7
Q ss_pred CCCCCCCEEE
Q ss_conf 6656554698
Q gi|254780638|r 195 STCRGSGQII 204 (384)
Q Consensus 195 ~~C~G~g~i~ 204 (384)
+.|.|.|.|.
T Consensus 743 ~GC~GqGHIs 752 (968)
T KOG3803 743 PGCDGQGHIS 752 (968)
T ss_pred CCCCCCCCCC
T ss_conf 8857766424
No 134
>pfam03444 DUF293 Domain of unknown function. This domain is always found with a pair of CBS domains pfam00571. this region may be distantly related to the HrcA proteins of prokaryotes (Bateman A pers. obs.).
Probab=30.05 E-value=39 Score=14.35 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=13.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 999999999999987288888100
Q gi|254780638|r 345 LNKRQRELLEEFEQISSQDNNPQS 368 (384)
Q Consensus 345 Ls~~qk~ll~~l~~~~~~~~~~~~ 368 (384)
||..|+++|+.|.+++.+...|-.
T Consensus 2 LT~~Qr~IL~aLI~lY~~~~~pVk 25 (79)
T pfam03444 2 LTPVQKEILQALINLYRKKGRAVK 25 (79)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 778999999999999997299866
No 135
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=29.87 E-value=39 Score=14.33 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=10.1
Q ss_pred HHHHHHHHCCHHHHHHHHH
Q ss_conf 9999876099899999877
Q gi|254780638|r 50 ISEAYEVLRDPQKRALYDQ 68 (384)
Q Consensus 50 I~eAYevLsD~~kR~~YD~ 68 (384)
+-.-|+.|..|-=-+.|+.
T Consensus 79 L~aKYqklY~PlYsKR~ei 97 (360)
T PTZ00007 79 LRQKYHDLYGPIYDKRREA 97 (360)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999862888889999
No 136
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=29.52 E-value=35 Score=14.64 Aligned_cols=30 Identities=17% Similarity=0.379 Sum_probs=13.8
Q ss_pred CCCCEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 443100023432257885421035531011
Q gi|254780638|r 149 PTAVKCSTCSGSGAKPGTNPMDCNICNGSG 178 (384)
Q Consensus 149 ~~~~~C~~C~G~g~~~~~~~~~C~~C~G~G 178 (384)
+....|..|.-...........||.|++.+
T Consensus 69 p~~~~C~~Cg~~f~~~~~~~~~CP~Cgs~~ 98 (117)
T PRK00564 69 KVELECKDCSHVFKPNALDYGVCEKCHSKN 98 (117)
T ss_pred CCEEECCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf 878991008998822774068590988999
No 137
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=29.10 E-value=15 Score=17.35 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=20.0
Q ss_pred CCHHHHH-HHHHH-HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 8999999-99999-999975699887987999999999998760998999
Q gi|254780638|r 16 ATDRQLK-TAFRS-LAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKR 63 (384)
Q Consensus 16 As~~eIK-kAYrk-lA~k~HPDkn~~d~~A~ekFkeI~eAYevLsD~~kR 63 (384)
+.-+|+| .+|-. +++.--| +.+--..|+++|+-.+-..+-
T Consensus 36 ~Al~e~rn~~~G~~~~l~~~~--------~~~~~~~~~~~Y~~~~~~a~~ 77 (495)
T TIGR02533 36 AALDEVRNRLFGAAVELIIAT--------ASEIDDAINSVYARSSSSAAQ 77 (495)
T ss_pred HHHHHHHHHHCCCCCEECCCC--------HHHHHHHHHHHHCCCCHHHHH
T ss_conf 579999864338520000168--------478999999874166278999
No 138
>cd01802 AN1_N AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=28.87 E-value=41 Score=14.21 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=26.2
Q ss_pred CCCCCEEEE-CCCCEEEEEECHHHHCCCCEEEEECCCCCCCCEEECC
Q ss_conf 346842864-1484699984666513542488516788823101168
Q gi|254780638|r 262 KKHQFFKRD-GADLYCTVPISIVTVAMGGTFDVATLDATHSRVTIPE 307 (384)
Q Consensus 262 ~~h~~f~r~-g~dL~~~~~I~l~eal~G~~~~i~tldG~~i~i~i~~ 307 (384)
+.-|+|-.+ |.-||+. +++.+. -.+-|+||.|+.+.|.+.+
T Consensus 5 ~~~~~~n~~~~~~~~~~--l~~~~~---MqIfVKTLtGK~i~l~Vep 46 (103)
T cd01802 5 KEPPFFNEDNMGPFHYK--LPFYDT---MELFIETLTGTCFELRVSP 46 (103)
T ss_pred CCCCEEECCCCCEEEEE--ECCCCC---CEEEEEECCCCEEEEEECC
T ss_conf 68983460589578998--337997---4899993599579999778
No 139
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase; InterPro: IPR005941 The lysine/diaminopimelic acid branch of the aspartate pathway produces the essential amino acid lysine via the intermediate meso-diaminopimelic acid (meso-DAP), which is also a vital cell wall component in Gram-negative bacteria . The production of dihydropicolinate from aspartate-semialdehyde controls flux into the lysine/diaminopimelic acid pathway. Three variants of this pathway exist, differing in how tetrahydropicolinate (formed by reduction of dihydropicolinate) is metabolised to meso-DAP. One variant, the most commonly found one in archaea and bacteria, uses primarily succinyl intermediates, while a second variant, found only in Bacillus, utilises primarily acetyl intermediates. In the third variant, found in some Gram-positive bacteria, a dehydrogenase converts tetrahydropicolinate directly to meso-DAP. In all variants meso-DAP is subsequently converted to lysine by a decarboxylase, or, in Gram-negative bacteria, assimilated into the cell wall. Evidence exists that a fourth, currently unknown, variant of this pathway may function in plants . Succinyl-diaminopimelate desuccinylase (3.5.1.18 from EC) hydrolyses N-succinyl-L,L-diaminopimelic acid which is required for the bacterial synthesis of lysine and meso-diaminopimelic acid. This group of bacterial sequences belong to the MEROPS peptidase family M20 (clan MH), subfamily M20A (non-peptidase homologs). ; GO: 0009014 succinyl-diaminopimelate desuccinylase activity, 0009089 lysine biosynthetic process via diaminopimelate.
Probab=28.78 E-value=36 Score=14.63 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=24.2
Q ss_pred CCCEEEEEEEECCCCCCHHH-HHHHHHHHHHC
Q ss_conf 65279999999298999999-99999999872
Q gi|254780638|r 330 KGDLYVQVQVETPQKLNKRQ-RELLEEFEQIS 360 (384)
Q Consensus 330 rGdl~i~~~v~~P~~Ls~~q-k~ll~~l~~~~ 360 (384)
-|+|.|+|||.|=+.+|.+. |+.+.+|-+-.
T Consensus 251 Pg~L~v~FN~Rfs~e~~~e~~k~~v~~il~~h 282 (383)
T TIGR01246 251 PGELKVQFNIRFSTEVSEETLKSRVEAILDQH 282 (383)
T ss_pred CHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 11120013410286677178999999999742
No 140
>pfam11983 DUF3484 Domain of unknown function (DUF3484). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 65 to 81 amino acids in length. This domain is found associated with pfam02491.
Probab=28.50 E-value=41 Score=14.17 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=15.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCC
Q ss_conf 881005889999998875059
Q gi|254780638|r 364 NNPQSTGFFARMKDFFDSLKN 384 (384)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~ 384 (384)
++..+....+|+|++|.||=|
T Consensus 50 ~~e~k~k~~dRvrg~FgsmFD 70 (70)
T pfam11983 50 PEEPKEKLTDRVKGFFGNMFD 70 (70)
T ss_pred CCCCCCCHHHHHHHHHHHHCC
T ss_conf 444430078999998875049
No 141
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=28.21 E-value=37 Score=14.53 Aligned_cols=11 Identities=27% Similarity=0.652 Sum_probs=5.3
Q ss_pred CCCCEECCCCC
Q ss_conf 44310002343
Q gi|254780638|r 149 PTAVKCSTCSG 159 (384)
Q Consensus 149 ~~~~~C~~C~G 159 (384)
+....|..|+.
T Consensus 68 p~~~~C~~C~~ 78 (114)
T PRK03681 68 EAECWCETCQQ 78 (114)
T ss_pred CCEEECCCCCC
T ss_conf 85899655998
No 142
>PRK08938 DNA topoisomerase I; Validated
Probab=28.17 E-value=37 Score=14.52 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=10.5
Q ss_pred CHHHHCCCCC---------CCHHHHHHHHH
Q ss_conf 2487187998---------89999999999
Q gi|254780638|r 6 FYQVLGIDRN---------ATDRQLKTAFR 26 (384)
Q Consensus 6 yY~iLGV~~~---------As~~eIKkAYr 26 (384)
++++|++.+. -|.++|++|+.
T Consensus 95 i~~~l~~~~~~~~Ri~f~eiT~~aI~~A~~ 124 (692)
T PRK08938 95 LAHILNLDPSDKNRVVFNEITKDAVKESFK 124 (692)
T ss_pred HHHHHCCCCCCCEEEEEECCCHHHHHHHHH
T ss_conf 999867788875378995689999999996
No 143
>PRK12297 obgE GTPase ObgE; Reviewed
Probab=28.16 E-value=42 Score=14.13 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCCCCCCCC
Q ss_conf 422221222221123222
Q gi|254780638|r 116 RSSSTGEAGADLRYNLEI 133 (384)
Q Consensus 116 ~~~~~~~~~~d~~~~~~i 133 (384)
.....+..+.|+.+.+++
T Consensus 74 ~~~~~G~~g~d~~i~VP~ 91 (429)
T PRK12297 74 GKNMHGRNGEDLIIKVPV 91 (429)
T ss_pred CCCCCCCCCCCEEEEECC
T ss_conf 888838999857998189
No 144
>KOG2577 consensus
Probab=27.78 E-value=22 Score=16.20 Aligned_cols=19 Identities=42% Similarity=0.578 Sum_probs=15.7
Q ss_pred HHHHHHHHCCHHHHHHHHHH
Q ss_conf 99998760998999998772
Q gi|254780638|r 50 ISEAYEVLRDPQKRALYDQG 69 (384)
Q Consensus 50 I~eAYevLsD~~kR~~YD~~ 69 (384)
+|+|-++|--- |||+||-.
T Consensus 94 Ln~aA~~L~Vq-KRRIYDIT 112 (354)
T KOG2577 94 LNKAAEVLNVQ-KRRIYDIT 112 (354)
T ss_pred HHHHHHHHCCC-CCEEEEHH
T ss_conf 89988885215-21133024
No 145
>CHL00175 minD septum-site determining protein; Validated
Probab=27.37 E-value=43 Score=14.03 Aligned_cols=45 Identities=16% Similarity=0.196 Sum_probs=24.1
Q ss_pred EEEEECCCCC-CHHHHHHHHHHHH--HCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9999929899-9999999999998--7288888100588999999887
Q gi|254780638|r 336 QVQVETPQKL-NKRQRELLEEFEQ--ISSQDNNPQSTGFFARMKDFFD 380 (384)
Q Consensus 336 ~~~v~~P~~L-s~~qk~ll~~l~~--~~~~~~~~~~~~~~~~~~~~~~ 380 (384)
=+.+..|+.. +..-+++-++|.. .......+..++||+||+++|-
T Consensus 229 Pvv~~~P~S~~a~a~~~iA~~l~~~~~~~~~~~~~~~~~~~kl~~~f~ 276 (279)
T CHL00175 229 PLVLKKKLTLSGIAFENAARRLVGKQVYFIDLDSPSKGPLKRLRRFFL 276 (279)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 589849999999999999999957876766555445659999999856
No 146
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I; InterPro: IPR006424 This group of sequences represent glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilise NAD (1.2.1.12 from EC), NADP (1.2.1.13 from EC) or either (1.2.1.59 from EC). In some species, NAD- and NADP- utilising forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively . An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine . This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria . This enzyme is described by IPR006422 from INTERPRO. These two groups of sequences exhibit a close evolutionary relationship. There exists the possibility that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to possess a limited E4PD activity as well as a robust GAPDH activity ).; GO: 0008943 glyceraldehyde-3-phosphate dehydrogenase activity, 0051287 NAD binding, 0006006 glucose metabolic process.
Probab=27.13 E-value=44 Score=14.00 Aligned_cols=90 Identities=17% Similarity=0.170 Sum_probs=40.5
Q ss_pred HHHCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCC--CCEEEE---CCCCEEEEEECHHHHCCCCEEEEECCCCCCC
Q ss_conf 11001148501203677656788416641575310346--842864---1484699984666513542488516788823
Q gi|254780638|r 227 VPPGVDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKH--QFFKRD---GADLYCTVPISIVTVAMGGTFDVATLDATHS 301 (384)
Q Consensus 227 Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~~~~h--~~f~r~---g~dL~~~~~I~l~eal~G~~~~i~tldG~~i 301 (384)
=.-|+..|+.-++.- .-+-|+ +.-.+| ..++|- ..|++-+=+ =|-.=-..-||.|.|+ |
T Consensus 197 e~FGI~~G~MTTvHs-----yT~dQ~------l~D~~~~~~D~Rr~RAAa~NiIPtsT----GAAkA~~~VlP~L~GK-L 260 (366)
T TIGR01534 197 EEFGIVSGLMTTVHS-----YTNDQN------LVDGPHRHKDLRRARAAALNIIPTST----GAAKAIGKVLPELAGK-L 260 (366)
T ss_pred HCCCEEEEEEEEEEE-----ECCCCE------EECCCCCCCCCCCCCCCCCCCCHHHH----HHHHHHHHHCCCCCCC-E
T ss_conf 104301016999986-----508710------42077688875201300026630034----6888998743577764-0
Q ss_pred CEEECCCCCCCCEEEECCEECCCCCCCCCCCEEEEEEEECCCCCCHHHHH
Q ss_conf 10116851778878988810200689886527999999929899999999
Q gi|254780638|r 302 RVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRE 351 (384)
Q Consensus 302 ~i~i~~~~~~~~~~~i~g~G~p~~~~~~rGdl~i~~~v~~P~~Ls~~qk~ 351 (384)
. |.-+|| |..+.. +|.+.+.+=+..|.++.+
T Consensus 261 ~---------G~A~RV-----Pt~~vS-----~vdL~~~l~k~~~~~~vn 291 (366)
T TIGR01534 261 T---------GMAIRV-----PTPNVS-----LVDLVVNLEKKVTKEEVN 291 (366)
T ss_pred E---------EEEEEE-----ECCCCE-----EEEEEEECCCCCCHHHHH
T ss_conf 1---------789976-----538952-----999997337877889999
No 147
>PRK10927 essential cell division protein; Provisional
Probab=27.11 E-value=42 Score=14.12 Aligned_cols=12 Identities=50% Similarity=0.786 Sum_probs=4.1
Q ss_pred CCHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780638|r 345 LNKRQRELLEEF 356 (384)
Q Consensus 345 Ls~~qk~ll~~l 356 (384)
||++|++||++|
T Consensus 114 LT~EQRQLLeQM 125 (319)
T PRK10927 114 LTPEQRQLLEQM 125 (319)
T ss_pred CCHHHHHHHHHH
T ss_conf 799999999999
No 148
>TIGR01674 phage_lambda_G phage minor tail protein G; InterPro: IPR010027 This entry identifies a family of bacteriophage proteins including G of phage lambda. This protein has been described as undergoing a translational frameshift at a Gly-Lys dipeptide near the C terminus of protein G from phage lambda, with about 4 0.000000e+00fficiency, to produce tail assembly protein G-T..
Probab=26.86 E-value=44 Score=13.97 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=23.4
Q ss_pred CCCCHHH-HHHHHHHHHHH---HCCCCCCCCHHHHHHHHHHH
Q ss_conf 9889999-99999999999---75699887987999999999
Q gi|254780638|r 14 RNATDRQ-LKTAFRSLAMK---YHPDQNRNDPEAKEKFAQIS 51 (384)
Q Consensus 14 ~~As~~e-IKkAYrklA~k---~HPDkn~~d~~A~ekFkeI~ 51 (384)
..+..+. ||-||.+.||. |||-|..-++++.+--+.|.
T Consensus 45 ~~~~~~~~~~~g~~~vAm~lw~~~~~ks~~~~~~~~~v~~l~ 86 (138)
T TIGR01674 45 EKAEAEKAVRVGALLVAMSLWHWLVSKSLQNEEASQDVETLE 86 (138)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 822478999999999999986100112237863699999999
No 149
>KOG1957 consensus
Probab=26.57 E-value=36 Score=14.64 Aligned_cols=21 Identities=43% Similarity=0.754 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 889999999999999997569988
Q gi|254780638|r 15 NATDRQLKTAFRSLAMKYHPDQNR 38 (384)
Q Consensus 15 ~As~~eIKkAYrklA~k~HPDkn~ 38 (384)
.-|+.+||+|-+.|- |||.|-
T Consensus 147 aitekdi~~am~~lg---~p~~ne 167 (555)
T KOG1957 147 AITEKDIKKAMRNLG---EPDQNE 167 (555)
T ss_pred CCCHHHHHHHHHHCC---CCCCCH
T ss_conf 022778999998538---998321
No 150
>pfam04829 DUF638 Possible hemagglutinin (DUF638). This family represents a conserved region found in a bacterial protein which may be a hemagglutinin or hemolysin.
Probab=26.35 E-value=43 Score=14.08 Aligned_cols=19 Identities=16% Similarity=0.517 Sum_probs=12.9
Q ss_pred CCCCCHHHHHHHHHHHHHC
Q ss_conf 9899999999999999872
Q gi|254780638|r 342 PQKLNKRQRELLEEFEQIS 360 (384)
Q Consensus 342 P~~Ls~~qk~ll~~l~~~~ 360 (384)
|..||++||+.+..|..+.
T Consensus 2 ~~~Lte~qKq~is~ls~la 20 (56)
T pfam04829 2 PSTLTEEQKQKISALAKLA 20 (56)
T ss_pred HHHCCHHHHHHHHHHHHHH
T ss_conf 7774999999999999999
No 151
>pfam12057 DUF3538 Domain of unknown function (DUF3538). This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain is found associated with pfam00240. This domain has a conserved SDL sequence motif.
Probab=26.04 E-value=40 Score=14.27 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 9999999987609
Q gi|254780638|r 46 KFAQISEAYEVLR 58 (384)
Q Consensus 46 kFkeI~eAYevLs 58 (384)
-|.-++.||-.||
T Consensus 53 ~lH~LsHa~hAlS 65 (118)
T pfam12057 53 ALHYLSHAQHALS 65 (118)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 152
>KOG0276 consensus
Probab=26.02 E-value=46 Score=13.87 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=10.6
Q ss_pred CCCCEEEEEECCCCCCEEEECCCC
Q ss_conf 166415753103468428641484
Q gi|254780638|r 251 APGDLYIFISVKKHQFFKRDGADL 274 (384)
Q Consensus 251 ~~GDl~i~i~~~~h~~f~r~g~dL 274 (384)
..|-|+=.|.+.+...|.-+.-+|
T Consensus 452 ~~~~lVrrI~v~~k~v~w~d~g~l 475 (794)
T KOG0276 452 ESGELVRRIEVTSKHVYWSDNGEL 475 (794)
T ss_pred CCCEEEEEEEECCCEEEEECCCCE
T ss_conf 533488887503560699269878
No 153
>pfam02963 EcoRI Restriction endonuclease EcoRI.
Probab=25.55 E-value=33 Score=14.88 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=28.4
Q ss_pred CEEEEECCCCCCCCEEECCCC-CCCCEEEECCEECCCC
Q ss_conf 248851678882310116851-7788789888102006
Q gi|254780638|r 289 GTFDVATLDATHSRVTIPEGT-QTGKQFRLKGKGMPVI 325 (384)
Q Consensus 289 ~~~~i~tldG~~i~i~i~~~~-~~~~~~~i~g~G~p~~ 325 (384)
-++.|+-+||+.+.|.-..|. +-=+.++-.+.|||+.
T Consensus 161 eti~v~rpdGr~v~l~~~sg~lnrlDRlTAanygMpIN 198 (257)
T pfam02963 161 ENISVTRPDGRVVNLEYNSGMLNRLDRLTAANYGMPIN 198 (257)
T ss_pred EEEEEECCCCCEEEEEECCCCCCCHHHHHHHHCCCCCC
T ss_conf 04786569983799972675302103555653197356
No 154
>TIGR00496 frr ribosome recycling factor; InterPro: IPR002661 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth . Thus ribosomes are 'recycled' and ready for another round of protein synthesis.; GO: 0006412 translation.
Probab=25.44 E-value=30 Score=15.22 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=15.5
Q ss_pred HHCCCCEEEE-ECCCCCCCCEEECCCCC
Q ss_conf 5135424885-16788823101168517
Q gi|254780638|r 284 TVAMGGTFDV-ATLDATHSRVTIPEGTQ 310 (384)
Q Consensus 284 eal~G~~~~i-~tldG~~i~i~i~~~~~ 310 (384)
.|++-..+-| |..||..|.|.+|+.|+
T Consensus 72 ~aI~~adLGl~P~~DG~~IR~~~PplT~ 99 (177)
T TIGR00496 72 KAILRADLGLNPNNDGEVIRINFPPLTE 99 (177)
T ss_pred HHHHHCCCCCCCCCCCCEEEECCCCCCH
T ss_conf 9998606887777887621025889874
No 155
>KOG2653 consensus
Probab=25.19 E-value=31 Score=15.11 Aligned_cols=12 Identities=50% Similarity=0.847 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999987609
Q gi|254780638|r 47 FAQISEAYEVLR 58 (384)
Q Consensus 47 FkeI~eAYevLs 58 (384)
++.|+|||.||+
T Consensus 198 MqLI~EaY~vlk 209 (487)
T KOG2653 198 MQLICEAYDVLK 209 (487)
T ss_pred HHHHHHHHHHHH
T ss_conf 899999999999
No 156
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=25.10 E-value=40 Score=14.30 Aligned_cols=37 Identities=3% Similarity=0.010 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHHHH
Q ss_conf 9999999999999872888881-005889999998875
Q gi|254780638|r 345 LNKRQRELLEEFEQISSQDNNP-QSTGFFARMKDFFDS 381 (384)
Q Consensus 345 Ls~~qk~ll~~l~~~~~~~~~~-~~~~~~~~~~~~~~~ 381 (384)
-.+.-|.+|.=|..-.-++.++ |.=--.+||+.+|+.
T Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (864)
T PRK06319 807 RGEATKKIWDYIKEHQLQSPENKKLIIPDSKLAGVIGP 844 (864)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCC
T ss_conf 17899999999987247882114414852334542198
No 157
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.91 E-value=26 Score=15.65 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=23.6
Q ss_pred CCCEEEEEECCCCCCE-------EEECCCCEEEEEE--------CHHHHCCCCEEEEECCC
Q ss_conf 6641575310346842-------8641484699984--------66651354248851678
Q gi|254780638|r 252 PGDLYIFISVKKHQFF-------KRDGADLYCTVPI--------SIVTVAMGGTFDVATLD 297 (384)
Q Consensus 252 ~GDl~i~i~~~~h~~f-------~r~g~dL~~~~~I--------~l~eal~G~~~~i~tld 297 (384)
+|=..+.|+.+..=.| -|..-|+++.=+| -+.-||+ +...+.|+.
T Consensus 301 ~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD~ETAeiavqAalT-GHLVlSTlH 360 (500)
T COG2804 301 PGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRDLETAEIAVQAALT-GHLVLSTLH 360 (500)
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEECC
T ss_conf 985156314035997899999986659985998355778899999999842-886766102
No 158
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=24.53 E-value=48 Score=13.68 Aligned_cols=12 Identities=25% Similarity=0.230 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHH
Q ss_conf 989999987724
Q gi|254780638|r 59 DPQKRALYDQGG 70 (384)
Q Consensus 59 D~~kR~~YD~~G 70 (384)
||+.|+.|=.|-
T Consensus 75 ~~~~r~~f~dfL 86 (351)
T PRK13654 75 DPETRKEFIDFL 86 (351)
T ss_pred CHHHHHHHHHHH
T ss_conf 999999999999
No 159
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=24.38 E-value=49 Score=13.66 Aligned_cols=18 Identities=39% Similarity=0.499 Sum_probs=11.4
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 879988999999999999
Q gi|254780638|r 11 GIDRNATDRQLKTAFRSL 28 (384)
Q Consensus 11 GV~~~As~~eIKkAYrkl 28 (384)
-|+++|+-.|||+|--+|
T Consensus 20 ~V~~~AnK~eIK~AVE~l 37 (77)
T TIGR03636 20 IVDRKATKGDIKRAVEKL 37 (77)
T ss_pred EECCCCCHHHHHHHHHHH
T ss_conf 988979989999999998
No 160
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=24.29 E-value=8.5 Score=19.10 Aligned_cols=48 Identities=17% Similarity=0.351 Sum_probs=19.4
Q ss_pred CCCCCCCCCCCCCCCCCCE--EEEEE-EECCCCCCCCEEEECCCCCCCCCC
Q ss_conf 2103553101121001100--12468-616665655469835412001121
Q gi|254780638|r 168 PMDCNICNGSGRVYTTAQS--FFSIE-RACSTCRGSGQIIPHPCSKCHGQG 215 (384)
Q Consensus 168 ~~~C~~C~G~G~~~~~~~~--~~~~~-~~C~~C~G~g~i~~~~c~~C~G~g 215 (384)
...||.|.+......++.+ ..++. -.|..|--.=-.++.+|..|...+
T Consensus 185 ~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR~KC~nC~~t~ 235 (308)
T COG3058 185 RQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVRVKCSNCEQSK 235 (308)
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 410777688774313463475334302120667878899998733666667
No 161
>KOG3442 consensus
Probab=24.28 E-value=49 Score=13.65 Aligned_cols=16 Identities=6% Similarity=0.360 Sum_probs=5.0
Q ss_pred HCCCCCCCHHHHHHHH
Q ss_conf 1879988999999999
Q gi|254780638|r 10 LGIDRNATDRQLKTAF 25 (384)
Q Consensus 10 LGV~~~As~~eIKkAY 25 (384)
|+|+..-+.+||-+-|
T Consensus 65 LnV~~~ln~eei~k~y 80 (132)
T KOG3442 65 LNVKEPLNREEIEKRY 80 (132)
T ss_pred HCCCCCCCHHHHHHHH
T ss_conf 1889988999999999
No 162
>TIGR00100 hypA hydrogenase nickel insertion protein HypA; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions . One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanococcus jannaschii. ; GO: 0016151 nickel ion binding, 0006464 protein modification process.
Probab=24.16 E-value=36 Score=14.61 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=13.4
Q ss_pred CCC-CCCCCCC-CCCCEECCCCCCCCC
Q ss_conf 013-5544455-443100023432257
Q gi|254780638|r 139 FSG-KTVQIRF-PTAVKCSTCSGSGAK 163 (384)
Q Consensus 139 ~~G-~~~~i~~-~~~~~C~~C~G~g~~ 163 (384)
..| +...|.. +....|.+|.-....
T Consensus 64 ~~gDA~L~i~~~~~~~~C~~C~~~~~~ 90 (128)
T TIGR00100 64 AEGDAKLEIEDEPVECRCEDCSEEVEP 90 (128)
T ss_pred ECCCEEEEEEEECCEEEEEECCCCCEE
T ss_conf 205207877885539998108801200
No 163
>pfam02520 DUF148 Domain of unknown function DUF148. This domain has no known function nor do any of the proteins that possess it. In one member of this family the aligned region is repeated twice.
Probab=24.11 E-value=49 Score=13.62 Aligned_cols=29 Identities=21% Similarity=0.492 Sum_probs=26.5
Q ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 745248718799889999999999999997
Q gi|254780638|r 3 KADFYQVLGIDRNATDRQLKTAFRSLAMKY 32 (384)
Q Consensus 3 ~~DyY~iLGV~~~As~~eIKkAYrklA~k~ 32 (384)
.++||.|++ +++-|..||-..-..+|.+|
T Consensus 4 ~~ef~~I~~-N~~lT~~e~~~~l~~Wa~k~ 32 (114)
T pfam02520 4 RQEFFAILK-NETLTIAEIDAQLEAWAEKY 32 (114)
T ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHHHC
T ss_conf 899999983-87467998999999999985
No 164
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=23.67 E-value=50 Score=13.57 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 9999999999987609989999
Q gi|254780638|r 43 AKEKFAQISEAYEVLRDPQKRA 64 (384)
Q Consensus 43 A~ekFkeI~eAYevLsD~~kR~ 64 (384)
+-+|.+.|++.-.-.+..++|+
T Consensus 10 ~~~kL~~i~~~vk~~~~~~~~k 31 (366)
T cd05175 10 AMEKLINLTDILKQEKKDETQK 31 (366)
T ss_pred HHHHHHHHHHHHHHCCCCHHHH
T ss_conf 9999999999986414317789
No 165
>PRK08136 glycosyl transferase family protein; Provisional
Probab=23.59 E-value=50 Score=13.56 Aligned_cols=29 Identities=10% Similarity=0.275 Sum_probs=19.2
Q ss_pred CCCCCCHHHHCCCC----CCCHHHHHHHHHHHH
Q ss_conf 98745248718799----889999999999999
Q gi|254780638|r 1 MKKADFYQVLGIDR----NATDRQLKTAFRSLA 29 (384)
Q Consensus 1 ~~~~DyY~iLGV~~----~As~~eIKkAYrklA 29 (384)
|.-+.|-+.||--+ +=|.+|-..|+..+-
T Consensus 1 m~~~~~ik~iG~G~~gardLt~~eA~~a~~~im 33 (316)
T PRK08136 1 MDYAKIIKEIGRGKNGARDLDRDTARALYAAML 33 (316)
T ss_pred CCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 987999999818999999979999999999998
No 166
>pfam01870 Hjc Archaeal holliday junction resolvase (hjc). This family of archaebacterial proteins are holliday junction resolvases (hjc gene). The Holliday junction is an essential intermediate of homologous recombination. This protein is the archaeal equivalent of RuvC but is not sequence similar.
Probab=23.47 E-value=51 Score=13.54 Aligned_cols=48 Identities=29% Similarity=0.387 Sum_probs=29.6
Q ss_pred CEEEECCEECCCCCC----CCCCCEEEEEEEECCC----CCCHHHHHHHHHHHHHC
Q ss_conf 878988810200689----8865279999999298----99999999999999872
Q gi|254780638|r 313 KQFRLKGKGMPVINS----GRKGDLYVQVQVETPQ----KLNKRQRELLEEFEQIS 360 (384)
Q Consensus 313 ~~~~i~g~G~p~~~~----~~rGdl~i~~~v~~P~----~Ls~~qk~ll~~l~~~~ 360 (384)
.++|++|-|+-.... -.+|+.++-+.|..-+ .|+.+|.+.|.++.+.-
T Consensus 16 avvR~~gSG~~~~~~pDiiA~~g~~~~~iEvKst~~~kiyl~~eqve~L~~f~~~f 71 (93)
T pfam01870 16 AVVRAAGSGGAVKPLPDIIAGNGGVYLVIEVKSRKKDKIYLKKEQVEKLVEFARRF 71 (93)
T ss_pred EEEEECCCCCCCCCCCCEEEECCCEEEEEEEEECCCCCEEECHHHHHHHHHHHHHC
T ss_conf 69995678998889998898569879999999616981887899999999999973
No 167
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=23.22 E-value=51 Score=13.51 Aligned_cols=20 Identities=20% Similarity=0.516 Sum_probs=12.3
Q ss_pred CHHHHHCCCCCCCEEECCCC
Q ss_conf 00011001148501203677
Q gi|254780638|r 224 SVNVPPGVDDGTRIRLSGEG 243 (384)
Q Consensus 224 ~I~Ip~G~~~G~~i~~~g~G 243 (384)
+.+||.|+..|+.|++.|.=
T Consensus 2 ~~~ip~gl~~G~~i~i~G~~ 21 (128)
T smart00276 2 TLPIPGGLKPGQTLTVRGIV 21 (128)
T ss_pred EEECCCCCCCCCEEEEEEEE
T ss_conf 02427998689899999997
No 168
>PRK09665 galactitol-specific PTS system component IIA; Provisional
Probab=22.83 E-value=52 Score=13.46 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=43.5
Q ss_pred CHHHHCCCCEEEEEC-CCCCCCCEEECC-----CCCCCCEEEECCEECCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Q ss_conf 666513542488516-788823101168-----51778878988810200689886527999999929899999999999
Q gi|254780638|r 281 SIVTVAMGGTFDVAT-LDATHSRVTIPE-----GTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLE 354 (384)
Q Consensus 281 ~l~eal~G~~~~i~t-ldG~~i~i~i~~-----~~~~~~~~~i~g~G~p~~~~~~rGdl~i~~~v~~P~~Ls~~qk~ll~ 354 (384)
++.+|++--+...|| |.-....|.||- ..+|.-.+....+.......+.-+++-|++-+.+.-+=...|.++|+
T Consensus 35 sf~~ai~~RE~~fPTGL~~~~~~VAIPHtd~e~V~k~~I~v~~lk~PV~F~~m~d~~~v~v~~vf~Lai~~~~~ql~~Lq 114 (150)
T PRK09665 35 SYPQALIAREAEFPTGIMLEQHAVAIPHCEAIHAKSPAIYLIRPDKKVHFQQADDDNDVAVSLVIALIVENPQQQLKLLR 114 (150)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCEECCCCCHHHCCCCEEEEEEECCCEEEEECCCCCCEEEEEEEEECCCCHHHHHHHHH
T ss_conf 99999999876189776789987564788800126665899993896166846899831489999980589578999999
Q ss_pred HHHHHCC
Q ss_conf 9998728
Q gi|254780638|r 355 EFEQISS 361 (384)
Q Consensus 355 ~l~~~~~ 361 (384)
+|-++-.
T Consensus 115 ~Lm~~~q 121 (150)
T PRK09665 115 CLFGKLQ 121 (150)
T ss_pred HHHHHHC
T ss_conf 9999972
No 169
>TIGR01418 PEP_synth phosphoenolpyruvate synthase; InterPro: IPR006319 This family represents phosphoenolpyruvate synthase; also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes. ; GO: 0008986 pyruvate water dikinase activity, 0006094 gluconeogenesis.
Probab=22.75 E-value=45 Score=13.92 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=10.7
Q ss_pred HHHHHHHHHHCCHH
Q ss_conf 99999987609989
Q gi|254780638|r 48 AQISEAYEVLRDPQ 61 (384)
Q Consensus 48 keI~eAYevLsD~~ 61 (384)
.+|-+||+.||+..
T Consensus 98 ~aI~~AY~~L~~~~ 111 (877)
T TIGR01418 98 EAIREAYDKLSEKY 111 (877)
T ss_pred HHHHHHHHHHCHHC
T ss_conf 99999998617010
No 170
>pfam11239 DUF3040 Protein of unknown function (DUF3040). Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=22.65 E-value=52 Score=13.43 Aligned_cols=13 Identities=38% Similarity=0.613 Sum_probs=8.4
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780638|r 345 LNKRQRELLEEFE 357 (384)
Q Consensus 345 Ls~~qk~ll~~l~ 357 (384)
||++++.+|+||+
T Consensus 3 LSe~Eqr~L~eiE 15 (82)
T pfam11239 3 LSEHEQRRLEEIE 15 (82)
T ss_pred CCHHHHHHHHHHH
T ss_conf 9889999999999
No 171
>pfam06748 DUF1217 Protein of unknown function (DUF1217). This family represents a conserved region that is found within bacterial proteins, most of which are hypothetical. Some members contain multiple copies.
Probab=22.42 E-value=53 Score=13.40 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHH------HHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 8899999999999999975699887987------9999999999987609989999987
Q gi|254780638|r 15 NATDRQLKTAFRSLAMKYHPDQNRNDPE------AKEKFAQISEAYEVLRDPQKRALYD 67 (384)
Q Consensus 15 ~As~~eIKkAYrklA~k~HPDkn~~d~~------A~ekFkeI~eAYevLsD~~kR~~YD 67 (384)
.+..++|-.+|.....+-- ....++. .+.+...|+.+|+||+|+.-|.+-.
T Consensus 57 ~~~~~~iv~~Y~~~~~E~~--~g~~n~~~rlALyf~r~~~~its~~~iL~d~~L~~v~~ 113 (150)
T pfam06748 57 AAQTQATVDKYLRQSLEEA--AGEQNEGVRLALYFRRKAGTITSAYDILADPALREVAL 113 (150)
T ss_pred HHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 8899999999999999999--73557779999999997177856999987888999999
No 172
>TIGR00345 arsA arsenite-activated ATPase (arsA); InterPro: IPR003348 This ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell. In Escherichia coli an anion-translocating ATPase has been identified as the product of the arsenical resistance operon of resistance plasmid R773. This ATP-driven oxyanion pump catalyses extrusion of the oxyanions arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance . The ArsA and ArsB proteins form a membrane-bound pump that functions as an oxyanion-translocating ATPase. The ArsC protein is an arsenate reductase that reduces arsenate to arsenite, which is subsequently pumped out of the cell .; GO: 0005524 ATP binding, 0006820 anion transport, 0016020 membrane.
Probab=22.32 E-value=53 Score=13.39 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=15.5
Q ss_pred EEEEEECC-CC-----------CCHHHHHHHHHHHHHCCCCC
Q ss_conf 99999929-89-----------99999999999998728888
Q gi|254780638|r 335 VQVQVETP-QK-----------LNKRQRELLEEFEQISSQDN 364 (384)
Q Consensus 335 i~~~v~~P-~~-----------Ls~~qk~ll~~l~~~~~~~~ 364 (384)
|.+|=++| ++ ..+.|++.|++|.+.-...+
T Consensus 261 vIvN~vLP~E~~~~hnd~f~~Ar~~~q~~~L~~I~~~f~d~~ 302 (330)
T TIGR00345 261 VIVNQVLPKEEAQEHNDEFCQARKELQQKYLKEIEEKFEDLP 302 (330)
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 787022578887435787899999999999987798618973
No 173
>COG1974 LexA SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]
Probab=22.27 E-value=53 Score=13.38 Aligned_cols=46 Identities=17% Similarity=0.321 Sum_probs=29.3
Q ss_pred HHHCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCC---EEEECCCCEEE
Q ss_conf 1100114850120367765678841664157531034684---28641484699
Q gi|254780638|r 227 VPPGVDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQF---FKRDGADLYCT 277 (384)
Q Consensus 227 Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~~~~h~~---f~r~g~dL~~~ 277 (384)
+.+|+.+|+.+.+... ....+||+++....-.-.. |.++|+.++..
T Consensus 123 ~~~gi~dGDlvvV~~~-----~~a~~GdiVvA~i~g~e~TvKrl~~~g~~i~L~ 171 (201)
T COG1974 123 IDAGILDGDLVVVDPT-----EDAENGDIVVALIDGEEATVKRLYRDGNQILLK 171 (201)
T ss_pred CCCCCCCCCEEEECCC-----CCCCCCCEEEEECCCCCEEEEEEEEECCEEEEE
T ss_conf 0277888989998388-----877799789998389817899999819879998
No 174
>PRK10613 hypothetical protein; Provisional
Probab=21.06 E-value=31 Score=15.04 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=6.2
Q ss_pred HHHHHCCHHHHHHHH
Q ss_conf 987609989999987
Q gi|254780638|r 53 AYEVLRDPQKRALYD 67 (384)
Q Consensus 53 AYevLsD~~kR~~YD 67 (384)
.-.-+-|+.+-..|+
T Consensus 48 ~ia~~eD~~QA~vf~ 62 (74)
T PRK10613 48 QIAQIEDEAQAAVFS 62 (74)
T ss_pred HHHHCCCHHHHHHHH
T ss_conf 998505888999999
No 175
>pfam10769 DUF2594 Protein of unknown function (DUF2594). This family of proteins with unknown function appear to be restricted to Enterobacteriaceae.
Probab=20.90 E-value=32 Score=14.97 Aligned_cols=26 Identities=12% Similarity=0.304 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 79999999999987609989999987
Q gi|254780638|r 42 EAKEKFAQISEAYEVLRDPQKRALYD 67 (384)
Q Consensus 42 ~A~ekFkeI~eAYevLsD~~kR~~YD 67 (384)
+|..-.-.+-..-.-+-|+..-..|.
T Consensus 37 DAGkvii~mEr~ia~~eD~~QAevf~ 62 (74)
T pfam10769 37 DAGRVILNMERQIAEIEDAEQAAVFT 62 (74)
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 30247899999998713888999999
No 176
>PRK02935 hypothetical protein; Provisional
Probab=20.83 E-value=41 Score=14.20 Aligned_cols=25 Identities=16% Similarity=0.720 Sum_probs=16.6
Q ss_pred EEEEECCCCCCCCEEE--ECCCCCCCC
Q ss_conf 4686166656554698--354120011
Q gi|254780638|r 189 SIERACSTCRGSGQII--PHPCSKCHG 213 (384)
Q Consensus 189 ~~~~~C~~C~G~g~i~--~~~c~~C~G 213 (384)
.++..|+.|+...+.. .+.|-.|+-
T Consensus 67 AvqV~CP~C~K~TKmLGrvD~CM~C~e 93 (117)
T PRK02935 67 AVQVICPSCDKPTKMLGRVDACMHCNQ 93 (117)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCC
T ss_conf 057789899971134202143130699
No 177
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=20.74 E-value=50 Score=13.58 Aligned_cols=14 Identities=14% Similarity=0.119 Sum_probs=5.9
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 99999999999998
Q gi|254780638|r 345 LNKRQRELLEEFEQ 358 (384)
Q Consensus 345 Ls~~qk~ll~~l~~ 358 (384)
-....++++.++..
T Consensus 243 ~~~~~~~~~~~~l~ 256 (269)
T COG0796 243 DPDEFEQLLKRWLG 256 (269)
T ss_pred CCHHHHHHHHHHHC
T ss_conf 95899999999854
No 178
>PRK06835 DNA replication protein DnaC; Validated
Probab=20.63 E-value=32 Score=15.00 Aligned_cols=14 Identities=7% Similarity=0.086 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780638|r 18 DRQLKTAFRSLAMK 31 (384)
Q Consensus 18 ~~eIKkAYrklA~k 31 (384)
.+||=+.|-+..++
T Consensus 6 ~~~i~r~ye~~r~~ 19 (330)
T PRK06835 6 ISEILKEYEKRRQK 19 (330)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 179
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=20.40 E-value=50 Score=13.59 Aligned_cols=24 Identities=25% Similarity=0.620 Sum_probs=12.9
Q ss_pred CCEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31000234322578854210355310
Q gi|254780638|r 151 AVKCSTCSGSGAKPGTNPMDCNICNG 176 (384)
Q Consensus 151 ~~~C~~C~G~g~~~~~~~~~C~~C~G 176 (384)
-=.|+.|.-.- .. ..|..||.|+-
T Consensus 134 ~~vC~vCGy~~-~g-e~P~~CPiCga 157 (166)
T COG1592 134 VWVCPVCGYTH-EG-EAPEVCPICGA 157 (166)
T ss_pred EEECCCCCCCC-CC-CCCCCCCCCCC
T ss_conf 78768788812-68-99876999998
No 180
>pfam07709 SRR Seven Residue Repeat. Associated with pfam02969 in This repeat is found in some Plasmodium and Theileria proteins.
Probab=20.39 E-value=42 Score=14.11 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHCCHH
Q ss_conf 9999999987609989
Q gi|254780638|r 46 KFAQISEAYEVLRDPQ 61 (384)
Q Consensus 46 kFkeI~eAYevLsD~~ 61 (384)
.|.++.+||+-|+...
T Consensus 2 ~fe~V~naYe~L~~~~ 17 (26)
T pfam07709 2 NFEKVKNAYEQLSXXX 17 (26)
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 7899999999973210
No 181
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=20.22 E-value=58 Score=13.09 Aligned_cols=29 Identities=3% Similarity=0.090 Sum_probs=17.8
Q ss_pred CCCCCHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 87452487187998899999999999999
Q gi|254780638|r 2 KKADFYQVLGIDRNATDRQLKTAFRSLAM 30 (384)
Q Consensus 2 ~~~DyY~iLGV~~~As~~eIKkAYrklA~ 30 (384)
.=+++-+-|.=.++=|.+|++.+++.+..
T Consensus 2 ~~~~~i~k~~~g~~Lt~eEa~~~~~~i~~ 30 (339)
T PRK00188 2 TMKELLNKLLEGEDLSEEEAEELMDQIMS 30 (339)
T ss_pred CHHHHHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf 87999999976999799999999999986
No 182
>pfam11023 DUF2614 Protein of unknown function (DUF2614). This is a family of proteins conserved in the Bacillaceae family. Some members are annotated as being protein YgzB. The function is not known.
Probab=20.19 E-value=43 Score=14.04 Aligned_cols=25 Identities=16% Similarity=0.712 Sum_probs=16.4
Q ss_pred EEEEECCCCCCCCEEE--ECCCCCCCC
Q ss_conf 4686166656554698--354120011
Q gi|254780638|r 189 SIERACSTCRGSGQII--PHPCSKCHG 213 (384)
Q Consensus 189 ~~~~~C~~C~G~g~i~--~~~c~~C~G 213 (384)
.++..|+.|....+.. .+.|-.|+-
T Consensus 67 AvqV~CP~C~K~TKmLGrvD~CM~C~e 93 (114)
T pfam11023 67 AVQVVCPNCGKPTKMLGRVDACMHCNE 93 (114)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCC
T ss_conf 057789899971134202143130699
Done!