RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780638|ref|YP_003065051.1| molecular chaperone protein
DnaJ [Candidatus Liberibacter asiaticus str. psy62]
         (384 letters)



>gnl|CDD|182712 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
          Length = 371

 Score =  604 bits (1560), Expect = e-173
 Identities = 220/382 (57%), Positives = 266/382 (69%), Gaps = 13/382 (3%)

Query: 1   MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60
           M K D+Y+VLG+ RNA++ ++K A+R LAMKYHPD+N  D EA+EKF +I EAYEVL DP
Sbjct: 1   MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDP 60

Query: 61  QKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSST 120
           QKRA YDQ GH A E G    G GGFG    G   F ++F  IFG I G GR        
Sbjct: 61  QKRAAYDQYGHAAFEQGG---GGGGFG----GGGGFGDIFGDIFGDIFGGGRG--GGRQR 111

Query: 121 GEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRV 180
              GADLRYN+EI+LEEA  G T +IR PT V C TC GSGAKPGT+P  C  C+G+G+V
Sbjct: 112 ARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQV 171

Query: 181 YTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLS 240
               Q FF++++ C TC G G+II  PC KCHGQGRV +EK LSV +P GVD G RIRLS
Sbjct: 172 -RMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLS 230

Query: 241 GEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATH 300
           GEG AG  GG  GDLY+ I VK+H  F+RDG DLYC VPIS  T A+GG  +V TLD   
Sbjct: 231 GEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDG-R 289

Query: 301 SRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQI- 359
            ++ IPEGTQTGK FRL+GKG+  + SG +GDLY QV VETP  L KRQ+ELLEEFE+  
Sbjct: 290 VKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEFEESF 349

Query: 360 -SSQDNNPQSTGFFARMKDFFD 380
            S + ++P+S GFF ++KDFFD
Sbjct: 350 ESGEKHSPKSKGFFDKVKDFFD 371


>gnl|CDD|162815 TIGR02349, DnaJ_bact, chaperone protein DnaJ.  This model
           represents bacterial forms of DnaJ, part of the
           DnaK-DnaJ-GrpE chaperone system. The three components
           typically are encoded by consecutive genes. DnaJ
           homologs occur in many genomes, typically not near DnaK
           and GrpE-like genes; most such genes are not included by
           this family. Eukaryotic (mitochondrial and chloroplast)
           forms are not included in the scope of this family.
          Length = 354

 Score =  464 bits (1197), Expect = e-131
 Identities = 175/359 (48%), Positives = 230/359 (64%), Gaps = 8/359 (2%)

Query: 5   DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRA 64
           D+Y++LG+ ++A++ ++K A+R LA KYHPD+N+ D EA+EKF +I+EAYEVL DP+KRA
Sbjct: 1   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRA 59

Query: 65  LYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSSTGEAG 124
            YDQ GH     G    G G  G  +    DF ++F   FGG  GSGR   R  S    G
Sbjct: 60  QYDQFGHAGFNGGGGGGGGGFNGFDIGFFGDFGDIFGDFFGGGGGSGR---RRRSGPRRG 116

Query: 125 ADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTA 184
            DLRY+LE++ EEA  G   +I  P    C TC G+GAKPGT+P  C  C G+G+V    
Sbjct: 117 EDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQ 176

Query: 185 QS---FFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLSG 241
            +   FF  ++ C TC G G+II  PCS C G+GRV E K ++V +P GVD G R+R+SG
Sbjct: 177 GTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSG 236

Query: 242 EGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHS 301
           +G AG  GG  GDLY+ I VK H+ F+RDG DLY  VPIS     +GG  +V TLD    
Sbjct: 237 KGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGD-V 295

Query: 302 RVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQIS 360
           ++ IP GTQ+G  FRLKGKG+P +    +GDL V V+VETP+ L+K Q+ELLEE  + S
Sbjct: 296 KLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELLEELAEAS 354


>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
          Length = 386

 Score =  399 bits (1026), Expect = e-112
 Identities = 181/387 (46%), Positives = 245/387 (63%), Gaps = 11/387 (2%)

Query: 1   MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60
             K D+Y++LG+DRNAT+ ++K A+R LA KYHPD N  D EA++KF +I+EAYE+L DP
Sbjct: 2   AAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDP 61

Query: 61  QKRALYDQGGHEALEYGAQSQG---AGGFGAGM--YGNSDFSELFEGIFGGIMGSGRSYK 115
           QKRA YDQ GH A + G   QG    GGFG G   +    F ++FE IFG   G+GR   
Sbjct: 62  QKRAQYDQFGHAAFDPGGFGQGGFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTGRRRA 121

Query: 116 RSSSTGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICN 175
            +    + GAD+RY+LE++ EEA  G   +I      KC  C GSGAKPG+ P+ C +C+
Sbjct: 122 ETGP--QKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCH 179

Query: 176 GSGRVYTTAQSFFS---IERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVD 232
           G+G+V T   + F      R C  C G G+II  PC+KC G GR+   + + VN+P G+D
Sbjct: 180 GTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGID 239

Query: 233 DGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFD 292
           DG  I L GEG  G+ GG  GDLYI I VK H  FKR+G ++Y  +PI+    A+GG  +
Sbjct: 240 DGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIE 299

Query: 293 VATLDATHSRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQREL 352
           + TLD    + TIPEGTQTG +FRL+GKG+P +    +GD  V+V +E P+KL ++Q+EL
Sbjct: 300 IPTLDGK-VKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKEL 358

Query: 353 LEEFEQISSQDNNPQSTGFFARMKDFF 379
           L EFE++S ++       FF RMKD F
Sbjct: 359 LREFEKLSGEEGTESRKSFFQRMKDAF 385


>gnl|CDD|184602 PRK14280, PRK14280, chaperone protein DnaJ; Provisional.
          Length = 376

 Score =  394 bits (1014), Expect = e-110
 Identities = 173/384 (45%), Positives = 233/384 (60%), Gaps = 16/384 (4%)

Query: 1   MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60
           M K D+Y+VLG+ ++A+  ++K A+R L+ KYHPD N+ +  A EKF +ISEAYEVL D 
Sbjct: 1   MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINK-EEGADEKFKEISEAYEVLSDD 59

Query: 61  QKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSEL--FEGIFGGIMGSGRSYKRSS 118
           QKRA YDQ GH     G       GFG G +G  DF     FE IF    G G   +R  
Sbjct: 60  QKRAQYDQFGHA----GPN----QGFGGGGFGGGDFGGGFGFEDIFSSFFGGG-GRRRDP 110

Query: 119 STGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSG 178
           +    GADL+Y + ++ EEA  GK  +I  P    C TC GSGAKPGT+   C+ C GSG
Sbjct: 111 NAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSG 170

Query: 179 RVYTTAQSFFS---IERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGT 235
           +V     + F      + C  C G+GQ I   C  CHG+G+V + K ++V +P GVD+G 
Sbjct: 171 QVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQ 230

Query: 236 RIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVAT 295
           +IR+SGEG  GV GG  GDLY+   V+ H+FF+RDG D+YC +P++    A+G   +V T
Sbjct: 231 QIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPT 290

Query: 296 LDATHSRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEE 355
           L     ++ IP GTQTG QFRLKGKG+P +    +GD YV V+V TP KL  RQ+ELL E
Sbjct: 291 LHG-KVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKELLRE 349

Query: 356 FEQISSQDNNPQSTGFFARMKDFF 379
           F ++S ++ + Q + FF + K  F
Sbjct: 350 FAELSGEEIDEQPSSFFDKAKRAF 373


>gnl|CDD|172782 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
          Length = 366

 Score =  385 bits (990), Expect = e-107
 Identities = 176/362 (48%), Positives = 234/362 (64%), Gaps = 9/362 (2%)

Query: 1   MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60
           M K D+Y++LG+ R+A++ ++K ++R LAMKYHPD+N  D EA+E F + +EAYEVL DP
Sbjct: 1   MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDP 60

Query: 61  QKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSST 120
           +KR +YDQ GHE L  G    G  GF       S F ++FE  FG   G GR   RS + 
Sbjct: 61  KKRGIYDQYGHEGLS-GTGFSGFSGFDDIF---SSFGDIFEDFFG--FGGGRR-GRSRTA 113

Query: 121 GEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRV 180
             AGADLRY+L +   EA  G   +IR      C  C GSG +PGT+P  C  C GSG+V
Sbjct: 114 VRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQV 173

Query: 181 YTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLS 240
            T +Q FFSI   C  CRG G++I  PC  CHGQGRV   K + V +P GVD G+R+RL 
Sbjct: 174 -TQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLR 232

Query: 241 GEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATH 300
           GEG AGV GG PGDLY+F++V+ H+FF+RDG D++C VPIS V  A+G   +V TL+   
Sbjct: 233 GEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGER 292

Query: 301 SRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQIS 360
             + IP+GTQ G  FR KGKG+P +  G +GD  ++V+V+ P +L K+Q ELL EF ++ 
Sbjct: 293 E-LKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEFARLE 351

Query: 361 SQ 362
           S+
Sbjct: 352 SE 353


>gnl|CDD|172789 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
          Length = 373

 Score =  381 bits (979), Expect = e-106
 Identities = 169/362 (46%), Positives = 227/362 (62%), Gaps = 9/362 (2%)

Query: 1   MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60
           M + D+Y+VLG+ R+A++ ++K A+R LA++YHPD+N ++PEA++KF + +EAYEVLRD 
Sbjct: 1   MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDA 60

Query: 61  QKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSST 120
           +KRA YD+ GH  +          G   G     D    F  IFG + G      R    
Sbjct: 61  EKRARYDRFGHAGV-------NGNGGFGGFSSAEDIFSHFSDIFGDLFGFSGGGSRRGPR 113

Query: 121 GEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRV 180
            +AG+DLRYNL +S  +A  G  V +R P  V C  C GSGA PGT+P  C  C GSG+V
Sbjct: 114 PQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQV 173

Query: 181 YTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLS 240
              +Q FF I   C  CRG G++I HPC KC G G V + + L V +P GVD G+R+RL 
Sbjct: 174 -RQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLR 232

Query: 241 GEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATH 300
           GEG  GV+GG PGDLY+ I+V+  + F+R G DL  T  IS V  A+G   +V TLD   
Sbjct: 233 GEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPV 292

Query: 301 SRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQIS 360
           + + IP+GTQ+G+ FRL+GKG+P + S +KGDL V+V V TP KL KRQ ELL EFE + 
Sbjct: 293 T-LDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLREFEALE 351

Query: 361 SQ 362
            +
Sbjct: 352 EE 353


>gnl|CDD|184598 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
          Length = 380

 Score =  354 bits (911), Expect = 2e-98
 Identities = 163/388 (42%), Positives = 230/388 (59%), Gaps = 18/388 (4%)

Query: 1   MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60
           M   ++Y  LG+ ++A+  ++K A+R L+ KYHPD N+ +P A+EK+ ++ EAYE L DP
Sbjct: 1   MNNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINK-EPGAEEKYKEVQEAYETLSDP 59

Query: 61  QKRALYDQGGHEALE--YGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSS 118
           QKRA YDQ G       +G  + G GGF  G  G   F ++F   FGG  G  R   R+ 
Sbjct: 60  QKRAAYDQYGAAGANGGFGGGAGGFGGFD-GSGGFGGFEDIFSSFFGG--GGAR---RNP 113

Query: 119 STGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSG 178
           +    G DL+Y + +  EEA  GK  ++ +     C TC+GSGAKPGT+P+ C  C+GSG
Sbjct: 114 NAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSG 173

Query: 179 RVYTTAQSFFSIER---ACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGT 235
            +    Q+   + R    C  C G+G+ I  PC  CHG G   +   +SV +P GV+ G 
Sbjct: 174 VITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQ 233

Query: 236 RIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVAT 295
           +IRL G+G AG  GG  GDLY+   V+  + F+RDG+ +Y T+PIS V  A+G T +V T
Sbjct: 234 QIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPT 293

Query: 296 LDATHSRV--TIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELL 353
           +   H  V   IP GTQTGK+FRL+GKG P +  G  GD +V V + TP KLN  Q+E L
Sbjct: 294 V---HGDVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKEAL 350

Query: 354 EEFEQISSQDN-NPQSTGFFARMKDFFD 380
           + F + S + + NP+  GFF ++KD F+
Sbjct: 351 KAFAKASGEKDVNPKKKGFFDKVKDAFE 378


>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional.
          Length = 378

 Score =  349 bits (897), Expect = 8e-97
 Identities = 168/387 (43%), Positives = 229/387 (59%), Gaps = 24/387 (6%)

Query: 1   MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60
            +K D+Y+VLG+DRNA  +++K A+R LA KYHPD +  +  A+EKF +ISEAY VL D 
Sbjct: 2   AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVS-EEEGAEEKFKEISEAYAVLSDD 60

Query: 61  QKRALYDQGGHEALEYGAQSQGAGGFGA-GMYGNSDFSELFEGIFGGI------MGSGRS 113
           +KR  YDQ GH          G  GF    ++ N +F ++F+G   GI       G G  
Sbjct: 61  EKRQRYDQFGH---------AGMDGFSQEDIFNNINFEDIFQGFGFGIGNIFDMFGFGGG 111

Query: 114 YKRSSSTGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNI 173
              S    + GAD+   +EI+LEEA SG    I+     KC  C+GS A+PG+    C  
Sbjct: 112 ---SRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPT 168

Query: 174 CNGSGRVYTTAQSFFS---IERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPG 230
           C G+G+V     +          C  C+G G+I+  PCS CHG+G V E K +SV +P G
Sbjct: 169 CGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAG 228

Query: 231 VDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGT 290
           V+ G+R+R+SGEG  G  GG PGDLY+ I VK H+ F+R+GA+LY   PIS V  A+G T
Sbjct: 229 VETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDT 288

Query: 291 FDVATLDATHSRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQR 350
            DV T+D     + IP GTQ+G  FRLKG GMP +    KG+LYV+V+V  P+KL+ +Q+
Sbjct: 289 VDVPTIDGP-VELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQK 347

Query: 351 ELLEEFEQISSQDNNPQSTGFFARMKD 377
           ELL EF  IS  + +    G F ++KD
Sbjct: 348 ELLREFASISGDEIHHVKKGLFDKVKD 374


>gnl|CDD|184600 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
          Length = 378

 Score =  344 bits (885), Expect = 2e-95
 Identities = 156/383 (40%), Positives = 216/383 (56%), Gaps = 19/383 (4%)

Query: 5   DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRA 64
           D+Y +LG+ RNA+D ++K A+R LA + HPD N  D EA+EKF +IS AYEVL DP+KR 
Sbjct: 4   DYYGLLGVSRNASDAEIKRAYRKLARELHPDVN-PDEEAQEKFKEISVAYEVLSDPEKRR 62

Query: 65  LYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSSTGEAG 124
           + D GG + LE      G GGFG G  G     ++FE  FGG  G+     R       G
Sbjct: 63  IVDLGG-DPLESAGG--GGGGFGGGFGG---LGDVFEAFFGG--GAASRGPRGRV--RPG 112

Query: 125 ADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTA 184
           +D    + + LEE  +G T Q+   TAV C  C G G    + P+ C+ C G G V T  
Sbjct: 113 SDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQ 172

Query: 185 QSFFS---IERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLSG 241
           +SF       R C TCRG G++IP PC +C G GRV   + ++V +P GV DG RIRL+ 
Sbjct: 173 RSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAA 232

Query: 242 EGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHS 301
           +G  G  GG  GDLY+ +  + H  F RDG DL+CTV + +V  A+G T  V  +    S
Sbjct: 233 QGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPS 292

Query: 302 RVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQISS 361
            +TIP GTQ G    L+G+GMP + SG +GDL+  V+V  P +L+    ELL E + +  
Sbjct: 293 EITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIELLRELKALRG 352

Query: 362 QD-----NNPQSTGFFARMKDFF 379
           ++     +     G F+R+++ F
Sbjct: 353 REVAEVRSTHAQGGLFSRLRETF 375


>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
          Length = 380

 Score =  343 bits (882), Expect = 4e-95
 Identities = 167/389 (42%), Positives = 232/389 (59%), Gaps = 20/389 (5%)

Query: 1   MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60
           M   D+Y+VLG+++ A+D ++K AFR LA+KYHPD+N+ + EA+EKF +I+EAY+VL DP
Sbjct: 1   MASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDP 60

Query: 61  QKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSEL------FEGIFGGIMGSGRSY 114
           QK+A YDQ G       A   GAGGFG+G +G  DFS++      F+  FGG  GS    
Sbjct: 61  QKKAQYDQFGT------ADFNGAGGFGSGGFGGFDFSDMGGFGDIFDSFFGGGFGSSS-- 112

Query: 115 KRSSSTGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNIC 174
            R  +  + GAD+ Y + ++ EEA  G   +I       C TC+G+GAKPGT+P  C+ C
Sbjct: 113 -RRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKC 171

Query: 175 NGSGRVYT---TAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGV 231
            G+G++     T    F     C  C GSG++I  PC+KCHG+G+V + + + VNVP GV
Sbjct: 172 GGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGV 231

Query: 232 DDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTF 291
           D G  I L G+G  G  GG  GDLYI I V  H+ FKR G D+Y    IS    A+G   
Sbjct: 232 DTGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEI 291

Query: 292 DVATLDATHSRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRE 351
            V T+D    +  +P GTQ G  FRLKGKG+P +NS  +G+ YV V V+ P+KLN +Q+E
Sbjct: 292 KVPTVDG-EVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKE 350

Query: 352 LLEEFEQISSQD-NNPQSTGFFARMKDFF 379
            L  F + S +  +  +    F ++K  F
Sbjct: 351 ALTMFMEASGETVDGKEKKTIFEKIKKGF 379


>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
          Length = 372

 Score =  343 bits (880), Expect = 6e-95
 Identities = 173/377 (45%), Positives = 244/377 (64%), Gaps = 11/377 (2%)

Query: 5   DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRA 64
           D+YQ+LG+ + A+   LK A+  LA +YHPD   +  +A++KF +I+ AY+VL+D QKRA
Sbjct: 4   DYYQILGVSKTASQADLKKAYLKLAKQYHPD-TTDAKDAEKKFKEINAAYDVLKDEQKRA 62

Query: 65  LYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSSTGEAG 124
            YD+ GH+A +   QS+G GG   G +   D +++F   F   MG  R  + +SS    G
Sbjct: 63  AYDRFGHDAFQN-QQSRGGGGNHGGFH--PDINDIFGDFFSDFMGGSRRSRPTSSKVR-G 118

Query: 125 ADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYTTA 184
           +DL+YNL I+LEEAF G    I F + VKC TC GSG++ G     C+ C+G G      
Sbjct: 119 SDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVG-ATRMQ 177

Query: 185 QSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLSGEGG 244
           Q FF+IE+AC  C+G+GQII +PC KCHG GR  +++ LSVN+P GV++GTRIR +GEG 
Sbjct: 178 QGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGE 237

Query: 245 AGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHSRVT 304
           AG+ GG  GDLY+ I++K H  +K DGA+L+C +PIS V  A+GG  +V  ++     +T
Sbjct: 238 AGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLT 297

Query: 305 IPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEF--EQISSQ 362
           IP GTQ G Q RL+ KGM  + S  +GD+   + VE P+ L+KRQRELLEEF  E I+ +
Sbjct: 298 IPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQRELLEEFKKESINEK 357

Query: 363 DNNPQSTGFFARMKDFF 379
           +N+     FF +MK  +
Sbjct: 358 END---GSFFNKMKSLW 371


>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
          Length = 377

 Score =  341 bits (875), Expect = 2e-94
 Identities = 174/388 (44%), Positives = 236/388 (60%), Gaps = 23/388 (5%)

Query: 3   KADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQK 62
             D+Y++LG+ ++A+   +K A+R LAMKYHPD+N+ +P+A+EKF +ISEAY VL D +K
Sbjct: 4   TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNK-EPDAEEKFKEISEAYAVLSDAEK 62

Query: 63  RALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSSTGE 122
           RA YD+ GH  ++   Q      F    +G   F ++FE  FGG    GR   R      
Sbjct: 63  RAQYDRFGHAGID--NQYSAEDIFRGADFG--GFGDIFEMFFGGGGRRGRMGPRR----- 113

Query: 123 AGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRVYT 182
            G+DLRY+L I+LEEA  G    I  P A +CSTCSG+GAKPGT+P  C  C G+G+V T
Sbjct: 114 -GSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTT 172

Query: 183 TAQSF---FSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRL 239
           T  +    F     CSTC G GQ+I  PC  C G G+V + + ++VNVP G D G R++L
Sbjct: 173 TRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKL 232

Query: 240 SGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDAT 299
           SGEG AG  G   GDLYI + VK+H +F+R G D+   +PIS    A+G    V TL   
Sbjct: 233 SGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTL--- 289

Query: 300 HSRV--TIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFE 357
           + +V   IP GTQT   FRLK KGMP ++   KGD  V+V V+TP KL + Q+ELL EF+
Sbjct: 290 YGKVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREFD 349

Query: 358 QISSQDNNPQ----STGFFARMKDFFDS 381
           ++S+  N  +      G F ++KD F+S
Sbjct: 350 ELSNGKNPSKAGKKKKGIFDKVKDAFES 377


>gnl|CDD|184609 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
          Length = 374

 Score =  331 bits (851), Expect = 2e-91
 Identities = 156/378 (41%), Positives = 217/378 (57%), Gaps = 15/378 (3%)

Query: 4   ADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKR 63
           AD+Y++LG+ R+A   +LK A+R LA KYHPD N+ +P A+++F +I+ AYEVL DP+ R
Sbjct: 3   ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNK-EPGAEDRFKEINRAYEVLSDPETR 61

Query: 64  ALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSSTGEA 123
           A YDQ G   +       GA GF   M     F+++FE  F G  G+G    R    G  
Sbjct: 62  ARYDQFGEAGV------SGAAGFP-DMGDMGGFADIFETFFSGFGGAGGQGGRRRRRGPQ 114

Query: 124 -GADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSG---R 179
            G DLRY+L++   EA  G   +IR P    C TC GSGAKPGT P  C+ C G+G   R
Sbjct: 115 RGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRR 174

Query: 180 VYTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRL 239
              T    F+    C TC G+GQ+I  PC  C GQG     K L +N+P GVD GTR+R+
Sbjct: 175 ATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRV 234

Query: 240 SGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDAT 299
           SGEG AG+ GG PGDLY+++ VK    F+RDG ++   + IS +   +G T +V T+D  
Sbjct: 235 SGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGP 294

Query: 300 HSRVTIPEGTQTGKQFRLKGKGMPVI-NSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQ 358
              +TIP GTQ      L+ KG+P + N   +GD  + V+V+ P +++  +RELLE+  +
Sbjct: 295 VE-LTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKLAK 353

Query: 359 ISSQDNNPQS-TGFFARM 375
           I  +        GFF  +
Sbjct: 354 IKGERQGKGGIEGFFGGL 371


>gnl|CDD|184606 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
          Length = 371

 Score =  328 bits (842), Expect = 1e-90
 Identities = 173/382 (45%), Positives = 248/382 (64%), Gaps = 17/382 (4%)

Query: 1   MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60
           M K D+Y+VLG+DRNA+  ++K A+R LA KYHPD N+  P+A++KF ++ EAY+ L DP
Sbjct: 1   MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNK-APDAEDKFKEVKEAYDTLSDP 59

Query: 61  QKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSST 120
           QK+A YDQ GH        +QG GG GAG +G   FS++F+  FGG  G GR   R+ + 
Sbjct: 60  QKKAHYDQFGHTD-----PNQGFGGGGAGDFGG--FSDIFDMFFGG--GGGR---RNPNA 107

Query: 121 GEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRV 180
              GADL+Y + +  +EA  GK  +I  P    C TC GSGAKPGT P  C+ C GSG++
Sbjct: 108 PRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQL 167

Query: 181 YTTAQSFFSI---ERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRI 237
                + F      R C  C G+G+II   C+ C G+G+V + K ++V VP G+D G ++
Sbjct: 168 NVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQL 227

Query: 238 RLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLD 297
           R+SG+G AGV GG PGDLY+  +VK H+FF+RDG D+YC +P++   VA+G   +V TL+
Sbjct: 228 RVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLN 287

Query: 298 ATHSRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFE 357
               ++ IP GTQTG  FRL+GKG+P ++   +GD +VQV+V TP+ L ++++EL+ EF 
Sbjct: 288 GK-VKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMREFA 346

Query: 358 QISSQDNNPQSTGFFARMKDFF 379
            +S    + Q+ GFFA++K  F
Sbjct: 347 GMSGGRPDEQNDGFFAKVKRAF 368


>gnl|CDD|184607 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
          Length = 382

 Score =  326 bits (838), Expect = 5e-90
 Identities = 156/375 (41%), Positives = 223/375 (59%), Gaps = 26/375 (6%)

Query: 3   KADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQK 62
           K D+Y++LG+ RNAT  ++K A+R LA KYHPD N+N PEA+EKF +I+EAY+VL DP+K
Sbjct: 2   KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEK 60

Query: 63  RALYDQGGHEALE-YGAQSQGAGGFGAGMYGNSD--FSEL-----FEGIFGGIMGSG--- 111
           R LYDQ GH A    G Q QG  GF     GN +    ++     F  IFG    +    
Sbjct: 61  RKLYDQFGHAAFSGSGQQQQGQEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERR 120

Query: 112 RSYKRSSSTGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDC 171
           ++Y+R       G D+   +EISLEEA++G TV +  P  V C  C G+G  PG+    C
Sbjct: 121 KTYQRP----VKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVC 176

Query: 172 NICNGSGRVYTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGV 231
             C GSG +Y     FF I + C TC G G ++  PCSKC+G+G V +++ + V +PPGV
Sbjct: 177 PTCGGSGEIYQR-GGFFRISQTCPTCGGEG-VLREPCSKCNGRGLVIKKETIKVRIPPGV 234

Query: 232 DDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTF 291
           D+G+++R+ G+G AG +GG PGDLYI + VK H  F+R G +LY  V I++    +G   
Sbjct: 235 DNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTEL 294

Query: 292 DVATLDATHSRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQK------- 344
           +V  LD    +V IP GT+ G + R+ GKGMP +     GDL V+V ++ P+        
Sbjct: 295 EVPLLDGKKEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVPKISMLSKLM 354

Query: 345 -LNKRQRELLEEFEQ 358
              K+ ++LL+E ++
Sbjct: 355 GDGKKAKKLLKELDK 369


>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
          Length = 372

 Score =  324 bits (831), Expect = 3e-89
 Identities = 163/379 (43%), Positives = 240/379 (63%), Gaps = 12/379 (3%)

Query: 1   MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60
           M +  +Y +LG+ ++A D ++K+A+R LA+KYHPD+N+ + E++EKF + +EAYE+LRDP
Sbjct: 1   MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDP 60

Query: 61  QKRALYDQGGHEALEYGAQSQGAGGFGAGMYGN-----SDFSELFEGIFGGIMGSGRSYK 115
           +KR  YDQ G   +     + GAGGFG G Y +      DF ++F   FGG  G G    
Sbjct: 61  KKRQAYDQFGKAGV-----NAGAGGFGQGAYTDFSDIFGDFGDIFGDFFGGGRGGGSGGG 115

Query: 116 RSSSTGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICN 175
           R S   + G+DLRYNLE+SLE+A  G+  +I  P    C  C+GSGA  G++P  C  C 
Sbjct: 116 RRSGP-QRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCG 174

Query: 176 GSGRVYTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGT 235
           GSG++  T Q FFS+   C TCRG G +I +PC  C GQG   + + +++ +PPGV+ G+
Sbjct: 175 GSGQIRRT-QGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGS 233

Query: 236 RIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVAT 295
           R+++SGEG AG  GG  GDLY+   +KKH+ F+R G DL     IS+    +G   +V T
Sbjct: 234 RLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPT 293

Query: 296 LDATHSRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEE 355
           +D   +++ IPEGT++G+ FRLKG GMP + +  KGD +V V++E P+K+ +RQREL+EE
Sbjct: 294 IDGKKAKMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELIEE 353

Query: 356 FEQISSQDNNPQSTGFFAR 374
           F + S ++        F +
Sbjct: 354 FARESGENIPGSKGKIFTK 372


>gnl|CDD|184605 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
          Length = 391

 Score =  322 bits (827), Expect = 1e-88
 Identities = 153/392 (39%), Positives = 223/392 (56%), Gaps = 22/392 (5%)

Query: 4   ADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKR 63
            D+Y +LG+ + A+  ++K A+R LA+KYHPD+N  D EA+++F ++SEAYEVL D QKR
Sbjct: 1   MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKR 60

Query: 64  ALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFS-ELFEGIFGGIMGSGRSYKRS--SST 120
             YD+ G +         GAGGFG    GN + +   F G FGG  G G S+        
Sbjct: 61  ESYDRYGKDGP-----FAGAGGFGGAGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGL 115

Query: 121 GEA------------GADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNP 168
           GEA            GA  + ++ +S EEA  G   ++       C  CSGSGA      
Sbjct: 116 GEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGI 175

Query: 169 MDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVP 228
             C+ C GSG+V  + + FFS+   C  C G G++I  PCS C GQGR+ +++ + V++P
Sbjct: 176 KVCDRCKGSGQVVQS-RGFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIP 234

Query: 229 PGVDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMG 288
            GVD G R+++ G G AG  G   GDLY+FI V+ H  F+R G DL   +PI  V  A+G
Sbjct: 235 AGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALG 294

Query: 289 GTFDVATLDATHS-RVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNK 347
              ++ TL    + R+TIPEG Q+G   +++G+G P ++   +GDL V++ VETPQ L++
Sbjct: 295 MKKEIPTLLKEGTCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSE 354

Query: 348 RQRELLEEFEQISSQDNNPQSTGFFARMKDFF 379
            Q+ELL +F      +N P+   F  ++K FF
Sbjct: 355 EQKELLRQFAATEKAENFPKKRSFLDKIKGFF 386


>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
          Length = 369

 Score =  294 bits (755), Expect = 2e-80
 Identities = 140/370 (37%), Positives = 216/370 (58%), Gaps = 10/370 (2%)

Query: 1   MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQN-RNDPEAKEKFAQISEAYEVLRD 59
            +K D+Y++LG+ RNAT  ++K A++ L  ++HPD++  N  EA++KF +I EAYEVL D
Sbjct: 1   REKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSD 60

Query: 60  PQKRALYDQGGH--EALEYGAQSQGAGGFGAGMYGNSDFSELF-EGIFGGIMGSGRSYKR 116
           PQKRA+YD+ G+  E   Y  +++  GGF   ++   DF  +F   IF    G  R+ + 
Sbjct: 61  PQKRAMYDRFGYVGEQPPY-QETESGGGFFEDIF--KDFENIFNRDIFDIFFGERRTQEE 117

Query: 117 SSSTGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNG 176
                  G D+RY +E++L +  +G  + + +     C  C G+G +PG+  + C  C+G
Sbjct: 118 QREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHG 177

Query: 177 SGRVYTTAQSFFSI---ERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDD 233
           +GR+    +SFF +   ER C  C G+G+I    C +C G GR+      +V +P GV+D
Sbjct: 178 TGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVED 237

Query: 234 GTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDV 293
           GT +R++G G AG YGG  GDLY+ + V+    FKR G+DL   V I  +   +G T +V
Sbjct: 238 GTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEV 297

Query: 294 ATLDATHSRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELL 353
              +   + + IP GTQ    FRLKGKG+P +  GR+GDL V V VE P++L++ +R+LL
Sbjct: 298 PLPEGGTTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLL 357

Query: 354 EEFEQISSQD 363
           +E  +     
Sbjct: 358 KELAKKRGVT 367


>gnl|CDD|184601 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
          Length = 392

 Score =  291 bits (747), Expect = 2e-79
 Identities = 147/372 (39%), Positives = 204/372 (54%), Gaps = 22/372 (5%)

Query: 5   DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRA 64
           DFY+ LG+  +A+  ++K A+R LA + HPD N  DP A+E+F  +SEA++VL DP KR 
Sbjct: 10  DFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRK 69

Query: 65  LYDQ------GGHEALEYGAQSQGAGGFGAGMYG-NSDFSELFEG-----------IFGG 106
            YD+      GG           G GGFG G  G   + ++LF+            +FGG
Sbjct: 70  EYDETRRLFAGGGFGGRRFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGG 129

Query: 107 IMGSGRSYKRSSSTGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGT 166
           +   G       S    G DL     +   EA  G T+ +R  +   C+TC GSGA+PGT
Sbjct: 130 LFNRG-GGSARPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGT 188

Query: 167 NPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVN 226
           +P  C  CNGSG V +  Q  F     C+ CRG+G II  PC +C G G  +  + ++V 
Sbjct: 189 SPKVCPTCNGSG-VISRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRTINVR 247

Query: 227 VPPGVDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVA 286
           +PPGV+DG RIRL+G+G AG+ G   GDLY+ + V+  + F RDG DL  TVP+S   +A
Sbjct: 248 IPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELA 307

Query: 287 MGGTFDVATLDATHSRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLN 346
           +G T  V TLD     V +P GT  G+  R++G+G+P   SG  GDL V V+V  P  L+
Sbjct: 308 LGSTLSVPTLDGP-VGVKVPAGTADGRILRVRGRGVPK-RSGGAGDLLVTVKVAVPPNLD 365

Query: 347 KRQRELLEEFEQ 358
               E LE + +
Sbjct: 366 GAAAEALEAYAE 377


>gnl|CDD|172769 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
          Length = 397

 Score =  283 bits (726), Expect = 4e-77
 Identities = 149/402 (37%), Positives = 224/402 (55%), Gaps = 29/402 (7%)

Query: 1   MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60
           MK+ D+Y+VLG+ R+A   ++K A+R LA+KYHPD+N ++ EA+E F +++EAYEVL + 
Sbjct: 1   MKR-DYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSND 59

Query: 61  QKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMG----------- 109
            KR  YDQ GH  +   A S G  G+G G    +D    F  +FGG              
Sbjct: 60  DKRRRYDQFGHAGVGSSAASGGGPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFED 119

Query: 110 --SGRSYKRSSSTGEAGADLRYNLEISLEEAFSG--KTVQIRFPTAVKCSTCSGSGAKPG 165
              G   +R +S G  G DL+  L+++LEE   G  KT++I+    V C  C+G+G+K G
Sbjct: 120 VFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIK--KQVPCKECNGTGSKTG 177

Query: 166 TNPMDCNICNGSGRVYTTAQSFF----SIERACSTCRGSGQIIPHPCSKCHGQGRVSEEK 221
                C  C+GSG V   +++ F    +I  AC TC G G+++   C  C+G+G    E 
Sbjct: 178 ATET-CPTCHGSGEVRQASKTMFGQFVNIT-ACPTCGGEGRVVKDRCPACYGEGIKQGEV 235

Query: 222 LLSVNVPPGVDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPIS 281
            + V VP GV DG  + L G+G AG  GGAPGDL + I  K H+ F R+G D+   + +S
Sbjct: 236 TVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVS 295

Query: 282 IVTVAMGGTFDVATLDATHSRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVET 341
              + +G   +V TLD    ++TIP GTQ     R+ GKG+  +    +GD YV+V V  
Sbjct: 296 YPDLVLGTKVEVPTLDG-AVKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFV 354

Query: 342 PQKLNKRQRELLEEFEQIS----SQDNNPQSTGFFARMKDFF 379
           P++++ + +ELL+E ++ S    +  N+ +   FF + KD F
Sbjct: 355 PKEVSHQDKELLKELKKSSHISPNAHNDKEEKSFFEKAKDIF 396


>gnl|CDD|184608 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
          Length = 371

 Score =  280 bits (717), Expect = 6e-76
 Identities = 138/382 (36%), Positives = 208/382 (54%), Gaps = 21/382 (5%)

Query: 4   ADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKR 63
            D+Y++LG+ R A+  ++K+A+R LA+KYHPD+N+ +  A EKFAQI+EAY VL D +KR
Sbjct: 2   MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKR 60

Query: 64  ALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFS--ELFEGIFGGIMGSGRSYKRSSSTG 121
           A YD+ G         + GAG  G   +G   F   ++FE +FGG    G   +R  + G
Sbjct: 61  AHYDRFG--------TAPGAGMPGGDPFGGMGFDPMDIFEQLFGGAGFGGGRGRRGPARG 112

Query: 122 EAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNP-MDCNICNGSGRV 180
           +   DL     I+LE+A +G+ V++      +C  C GS  +PG  P   C  C G+G V
Sbjct: 113 D---DLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAV 169

Query: 181 YTTAQSFFSI---ERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRI 237
              A++ F +   ++ C TCRG GQII  PC+ C G+GR  + + + V +P G+D+G RI
Sbjct: 170 RAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRI 229

Query: 238 RLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLD 297
           R++G G  G  G   GDLY+ I ++ H   +R+   L     I     A+GG   V TLD
Sbjct: 230 RVAGMGNEGPGGN--GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLD 287

Query: 298 ATHSRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFE 357
                + +  GTQ G   RL+G+GMP +     GDL V+ ++  P++L+   RE LE + 
Sbjct: 288 GPQV-IEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALEAYA 346

Query: 358 QISSQDNNPQSTGFFARMKDFF 379
           +    +      G F ++   F
Sbjct: 347 RAVGDEVPEPHEGLFDKVGKLF 368


>gnl|CDD|172777 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
          Length = 386

 Score =  279 bits (714), Expect = 1e-75
 Identities = 144/390 (36%), Positives = 213/390 (54%), Gaps = 15/390 (3%)

Query: 1   MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60
            +K D+Y+VLG+ + AT  ++K A+R  A++YHPD+N  D EA+EKF + +EAY+VL DP
Sbjct: 2   AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDP 61

Query: 61  QKRALYDQGGHEALEYGAQSQGAGGFGAGMYG-NSDFSELFEGIFGGI-----MGSGRSY 114
            KR+ YDQ GH  +   A   G  G G  M    S F ++F G  GG       G G S 
Sbjct: 62  DKRSRYDQFGHAGVGGAAGGGGFSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQ 121

Query: 115 KRSSSTGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNIC 174
           +R       G+DLR  ++++L+E  +G   + +    V CS C G+GA+       C  C
Sbjct: 122 QRVFR----GSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTC 177

Query: 175 NGSGRVYTTAQSFF---SIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGV 231
            GSG V     +       +  C TC G G+II   C KC G+G V  E++++V +P GV
Sbjct: 178 KGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGV 237

Query: 232 DDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTF 291
            +G ++ ++G+G AG +GG  GDL + I  + H    RD  DL   + +S+ T A+GG  
Sbjct: 238 AEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAV 297

Query: 292 DVATLDATHSRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRE 351
           +V T+D   ++V I  GTQ GK  RL+ KG+P +N    GDL V V V  P+ L+K +++
Sbjct: 298 EVPTIDG-KAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKEEKQ 356

Query: 352 LLEEFEQISS-QDNNPQSTGFFARMKDFFD 380
            LE+ E   + +         F + K FFD
Sbjct: 357 TLEKMENSDNFKPTTSIKEKIFKKFKSFFD 386


>gnl|CDD|184610 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
          Length = 389

 Score =  277 bits (710), Expect = 4e-75
 Identities = 146/390 (37%), Positives = 206/390 (52%), Gaps = 30/390 (7%)

Query: 5   DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRA 64
           D+Y+VLG+ ++AT+ ++K A+R LA +YHPD N+ D +A+E+F +ISEAY+VL D +KR 
Sbjct: 10  DYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRK 69

Query: 65  LYDQG----GHEALEYGAQSQGAGGF--------------GAGMYGNSDFSELFEGIFGG 106
            YD+     G+     G    G GGF              G G  G     ++F G+F  
Sbjct: 70  EYDEARSLFGNGGFRPGPGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNR 129

Query: 107 IMGSGRSYKRSSSTGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGT 166
             G  R+  R       GAD+   + +S  EA  G TV +R  +   C  CSG+GAK GT
Sbjct: 130 --GGRRTQPRR------GADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGT 181

Query: 167 NPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVN 226
            P  C  C+G+G+V +     FS+   C  C+G G I   PC  C G GR    + + V 
Sbjct: 182 TPRVCPTCSGTGQV-SRNSGGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVR 240

Query: 227 VPPGVDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVA 286
           +P GV DG RIRL G+G  G  GG  GDLY+ + V  H  F R G +L  TVP++    A
Sbjct: 241 IPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAA 300

Query: 287 MGGTFDVATLDATHSRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLN 346
           +G    V TL      V +P GT  G+  R++GKG      G +GDL V V+V  P+ L+
Sbjct: 301 LGAEVRVPTLGGPPVTVKLPPGTPNGRVLRVRGKGAVR-KDGTRGDLLVTVEVAVPKDLS 359

Query: 347 KRQRELLEEFEQISSQDNNPQSTGFFARMK 376
            + RE LE F + ++ D +P++   F   K
Sbjct: 360 GKAREALEAF-REATADEDPRA-ELFQAAK 387


>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
          Length = 365

 Score =  276 bits (707), Expect = 7e-75
 Identities = 137/360 (38%), Positives = 215/360 (59%), Gaps = 13/360 (3%)

Query: 3   KADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQK 62
           K D+Y++LG+ + A+  ++K A+R +A+KYHPD+N+ + EA+  F + +EAYEVL D  K
Sbjct: 2   KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNK 61

Query: 63  RALYDQGGHEALEYGAQSQGAGGFGAGMYGNSD----FSELFEGIFGGIMGSGRSYKRSS 118
           RA YD+ GH A E G    G  GF  G  G SD    F ++F+  F G  G  ++ K   
Sbjct: 62  RAQYDRFGHTAFEGGG---GFEGFSGGFSGFSDIFEDFGDIFDSFFTGNRGQDKNRKH-- 116

Query: 119 STGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSG 178
              E G DL Y +EISLE+A+ G    I     + C +C G  ++ GT+P  CN+CNGSG
Sbjct: 117 ---EKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSG 173

Query: 179 RVYTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIR 238
           RV      FF +   C  C G+G+II +PC  C G+G + +++ + + +P G+DD  +I+
Sbjct: 174 RV-MQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIK 232

Query: 239 LSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDA 298
           + G+G         GDLYI I +K H+ FKR+G DLY T+PIS    A+G    + T+ +
Sbjct: 233 MRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIAS 292

Query: 299 THSRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQ 358
              ++ IP+GT+  +Q  +K +GMP++++ + G+L + ++++TP+ LN    +LLE   +
Sbjct: 293 KKIKIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLENLSK 352


>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
          Length = 365

 Score =  274 bits (703), Expect = 2e-74
 Identities = 144/362 (39%), Positives = 207/362 (57%), Gaps = 16/362 (4%)

Query: 5   DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQN-RNDPEAKEKFAQISEAYEVLRDPQKR 63
           D+Y++LG+DRNA+   +K AFR LA K+HPD +  N  EA+EKF +ISEAYEVL DPQKR
Sbjct: 4   DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKR 63

Query: 64  ALYDQGGHEALEYGAQSQGAGGFGAGMYGN-SDFSELFEGIFGGIMGSG--RSYKRSSST 120
             YDQ G   +++GA   G   F    + + SD +++F  IFGG  GS     +    ST
Sbjct: 64  RQYDQTG--TVDFGA---GGSNFNWDNFTHFSDINDIFNQIFGGNFGSDFFSGFGNQQST 118

Query: 121 GEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGRV 180
                D+  NL+ISLE+A+ G   +I++     C  CSG+GAK G   + C  C+G+G+ 
Sbjct: 119 RNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGK-LITCPTCHGTGQQ 177

Query: 181 YTT-AQSFFSIERA--CSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRI 237
                Q FF +     C TC G G+I    C +C+G G V   + +SV +P G  D  R+
Sbjct: 178 RIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRL 237

Query: 238 RLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLD 297
           R+ G+G +  YGG  GDLY+ + V      +R   DLY    I+    A+GG  ++    
Sbjct: 238 RVKGKGQS--YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFR 295

Query: 298 ATHSRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFE 357
             ++ + IPEGTQ G+  ++KG GMP +N    GDL V++ VE P++L  +Q+EL+ EF 
Sbjct: 296 EKYN-LKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREFF 354

Query: 358 QI 359
            I
Sbjct: 355 DI 356


>gnl|CDD|172784 PRK14296, PRK14296, chaperone protein DnaJ; Provisional.
          Length = 372

 Score =  235 bits (601), Expect = 1e-62
 Identities = 120/374 (32%), Positives = 203/374 (54%), Gaps = 24/374 (6%)

Query: 1   MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60
           MKK D+Y+VLG+ + A++++++ A+R LA +YHPD N+  P+A +K  +I+EA +VL D 
Sbjct: 1   MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDK 59

Query: 61  QKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNSD-FSEL-------FEGIFGGIMGSGR 112
            KR  YDQ GH A +      G+ GF +      D FS +       F  IF    GS +
Sbjct: 60  DKRKQYDQFGHAAFD------GSSGFSSNFGDFEDLFSNMGSSGFSSFTNIFSDFFGSNK 113

Query: 113 SYKRSSSTGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCN 172
           S  + S+ G+    +  ++ ++ +E   G    I       CS C GSGA+  ++   CN
Sbjct: 114 SDYQRSTKGQ---SVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICN 170

Query: 173 ICNGSGRVYTTAQ-SFFSIERA--CSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPP 229
            C+G+G V       FF  +++  C+ C G+G+II + C  C G+G+  E K + VN+P 
Sbjct: 171 NCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPK 230

Query: 230 GVDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKR-DGADLYCTVPISIVTVAMG 288
           G+    +I+LS +G A +  G  GDL I I +K+ + F+  +  D+  T  IS +   +G
Sbjct: 231 GIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILG 290

Query: 289 GTFDVATLDATHSRVTIPEGTQTGKQFRLKGKGM-PVINSGRKGDLYVQVQVETPQKLNK 347
               + TLD    +  +P+   + +   +  KG+   IN  ++GDL ++V +  P+ L+K
Sbjct: 291 NEIIIKTLDGD-IKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSK 349

Query: 348 RQRELLEEFEQISS 361
           +++EL+E+  + +S
Sbjct: 350 KEKELIEQIYEQTS 363


>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional.
          Length = 369

 Score =  209 bits (534), Expect = 7e-55
 Identities = 130/383 (33%), Positives = 204/383 (53%), Gaps = 28/383 (7%)

Query: 6   FYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRAL 65
           +Y++L +++++    +K ++R LA+KYHPD+N  D EA+EKF  I+EAY VL D +KRAL
Sbjct: 5   YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRAL 64

Query: 66  YDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGI---FGGIMG-SGRSYKRSSSTG 121
           YD+ G + L     SQ            SDFS+ FE +   F    G   R  KR  S+ 
Sbjct: 65  YDRYGKKGLNQAGASQ------------SDFSDFFEDLGSFFEDAFGFGARGSKRQKSS- 111

Query: 122 EAGADLRYNLEISLEEAFSG--KTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSGR 179
               D    +E+S +EA  G  KT+++++ +   C +C G+GAK       C  CNG G+
Sbjct: 112 -IAPDYLQTIELSFKEAVFGCKKTIKVQYQSV--CESCDGTGAKDKALE-TCKQCNGQGQ 167

Query: 180 VYTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRL 239
           V+   Q F S  + C  C+G G+II  PC  C G+  + +++ +   +P G+DD  R+ L
Sbjct: 168 VFMR-QGFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVL 226

Query: 240 SGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDAT 299
             +G      G  GDLY+   VK+ + FKR+G DL+   P+   T+A+G T  V +L   
Sbjct: 227 KNKGNE-YEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGD 285

Query: 300 HSRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQI 359
              + IP   +  + F  + +G+    S  +G L V++QV  P+ LNK Q+ELLE+    
Sbjct: 286 ELELKIPRNARDRQTFAFRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQELLEKLHAS 345

Query: 360 SSQDNNPQSTGF---FARMKDFF 379
              +  P  +      +++KD+F
Sbjct: 346 FGYEGEPHKSVLETCISKIKDWF 368


>gnl|CDD|173334 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
          Length = 421

 Score =  200 bits (509), Expect = 7e-52
 Identities = 122/360 (33%), Positives = 180/360 (50%), Gaps = 37/360 (10%)

Query: 6   FYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRAL 65
            Y+VL + ++ T  ++K A+R LA+K+HPD+   DPE   KF +IS AYEVL DP+KR +
Sbjct: 30  LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKG-GDPE---KFKEISRAYEVLSDPEKRKI 85

Query: 66  YDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSSSTGEAGA 125
           YD+ G E LE             G    +D S+LF+ IFGG    G   KR       G 
Sbjct: 86  YDEYGEEGLE-------------GGEQPADASDLFDLIFGGGRKPGGK-KR-------GE 124

Query: 126 DLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSG-RVYTTA 184
           D+  +L+++LE+ ++G   ++     V C+ C G G  P    +DC +CNG G RV    
Sbjct: 125 DIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGG-PKDAFVDCKLCNGQGIRVQIRQ 183

Query: 185 QS--FFSIERACSTCRGSGQIIPHP--CSKCHGQGRVSEEKLLSVNVPPGVDDGTRIRLS 240
                   +  C++C G G+IIP    C  C G+G     K+L VN+  GV +  +I   
Sbjct: 184 MGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFH 243

Query: 241 GEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATH 300
           GE         PG++   ++ K H  FKR+G DL+ T  IS+     G  F +  LD   
Sbjct: 244 GEADEKP-NEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRK 302

Query: 301 SRVTIPEG--TQTGKQFRLKGKGMPVINSG-RKGDLYVQVQVETP--QKLNKRQRELLEE 355
             V  P G   + G    +  +GMP   S  +KG+LYV  +V  P  +K    ++E+L+ 
Sbjct: 303 LLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKS 362


>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional.
          Length = 306

 Score =  175 bits (445), Expect = 2e-44
 Identities = 102/371 (27%), Positives = 165/371 (44%), Gaps = 71/371 (19%)

Query: 1   MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60
           M+  D+Y ++G+      + +KTA+R LA KYHPD ++ +P+A+ +F +++EA+EVL D 
Sbjct: 1   MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDE 59

Query: 61  QKRALYDQ--GGHEALEYGAQSQGAGGFGAGMYGNSDFSELFEGIFGGIMGSGRSYKRSS 118
           Q+RA YDQ        ++  Q Q   G     +   DF ++F  IFG       + +   
Sbjct: 60  QRRAEYDQLWQHRNDPQFNRQFQHGDG---QSFNAEDFDDIFSSIFG-----QHARQSRQ 111

Query: 119 STGEAGADLRYNLEISLEEAFSGKTVQIRFPTAVKCSTCSGSGAKPGTNPMDCNICNGSG 178
                G D+   + + LEE  +     I +   V                      N  G
Sbjct: 112 RPAARGHDIEIEVAVFLEETLTEHKRTISYNLPVY---------------------NAFG 150

Query: 179 RVYTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSVNVPPGVDDGTRIR 238
            +                     Q IP               K L+V +P GV +G RIR
Sbjct: 151 MI--------------------EQEIP---------------KTLNVKIPAGVGNGQRIR 175

Query: 239 LSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDA 298
           L G+G  G  GG  GDL++ I +  H  F   G DL   VP++    A+G    V TL  
Sbjct: 176 LKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKE 235

Query: 299 THSRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQ 358
           +   +TIP G+Q G++ R+KGKG+  ++  + GDLY  +++  P K +++   L ++   
Sbjct: 236 SIL-LTIPPGSQAGQRLRVKGKGL--VSKKQTGDLYAVLKIVMPPKPDEKTAALWQQLAD 292

Query: 359 ISSQDNNPQST 369
            +    +P+  
Sbjct: 293 -AQSSFDPRKD 302


>gnl|CDD|184613 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
          Length = 291

 Score =  146 bits (370), Expect = 8e-36
 Identities = 112/374 (29%), Positives = 158/374 (42%), Gaps = 103/374 (27%)

Query: 1   MKKADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDP 60
           M   D+Y +LG+ +NA+  ++K AF+ LA KYHPD N+  P A+EKF +I+EAY VL DP
Sbjct: 1   MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDP 59

Query: 61  QKRALYDQGGHEALEYGAQSQGAGGFGAGMYGNS---DFSELFEGIFGGIMGSGRSYKRS 117
           +KR +YD  G  A   G Q    G  G G +      DFS+ F+ +FGG  G G      
Sbjct: 60  EKRRIYDTYGTTAASAGWQGPPPGPPGGGDFSGFNVGDFSDFFQQLFGGRGGFGGFGDLF 119

Query: 118 SSTG---EAGADLRYNLEISLEEAF---------SGKTVQIRFPTAVKCSTCSGSGAKPG 165
            S G     G DL   L ++LEEA+         +G+ + +R P  V+            
Sbjct: 120 GSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVAGERLSVRIPPGVR------------ 167

Query: 166 TNPMDCNICNGSGRVYTTAQSFFSIERACSTCRGSGQIIPHPCSKCHGQGRVSEEKLLSV 225
                                              GQ+I        G+GR   +  L V
Sbjct: 168 ----------------------------------EGQVIRLA-----GKGRQGGDLYLVV 188

Query: 226 NVPPGVDDGTRIRLSGEGGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTV 285
            + P        RL G+           DLY  + V                 PI++V  
Sbjct: 189 RLLPHPV----FRLEGD-----------DLYATVDVP---------------APIAVV-- 216

Query: 286 AMGGTFDVATLDATHSRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKL 345
             GG   V TLD     VTIP  TQ G++ RLKGKG P   +GR GD Y +V++  P + 
Sbjct: 217 --GGKVRVMTLDGP-VEVTIPPRTQAGRKLRLKGKGWPRGPAGR-GDQYAEVRITIPTRP 272

Query: 346 NKRQRELLEEFEQI 359
              +  L ++  ++
Sbjct: 273 TPEEERLYKQLAEL 286


>gnl|CDD|163547 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
           TopJ.  This model describes TopJ (MG_200, CbpA), a DnaJ
           homolog and probable assembly protein of the Mycoplasma
           terminal organelle. The terminal organelle is involved
           in both cytadherence and gliding motility.
          Length = 871

 Score = 98.7 bits (245), Expect = 2e-21
 Identities = 51/123 (41%), Positives = 74/123 (60%), Gaps = 7/123 (5%)

Query: 3   KADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQK 62
           K D+Y+VLGIDR+A ++++K AFR LA KYHPD+N   P+A   FA+I+EA +VL +P+K
Sbjct: 1   KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRN-KAPDAASIFAEINEANDVLSNPKK 59

Query: 63  RALYDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELFE-GIFGGIMGSGRSYKRSSSTG 121
           RA YD+ GH+    G   +    F A ++ NS F E+ + G F  I       K+     
Sbjct: 60  RANYDKYGHD----GVDREDDFDFQADVF-NSFFEEINKSGEFDNITDDDTPSKKKKKKK 114

Query: 122 EAG 124
           + G
Sbjct: 115 KKG 117



 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 34/145 (23%), Positives = 52/145 (35%), Gaps = 20/145 (13%)

Query: 243 GGAGVYGGAPGDLYIFISVKKHQFFKRDGADLYCTVPISIVTVAMGGTFDVATLDATHSR 302
           G    +G   GDL +   V    FF+     L+    +  +    GG  DV   +     
Sbjct: 717 GFGHDFGNGCGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGIIDVFGPN-KLFN 775

Query: 303 VTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQV--------------QVETPQKLNKR 348
           V IP G +   Q   K  G+       KG L V +              QV+   KL  R
Sbjct: 776 VRIPGGIKVNDQVIFKDLGL-TKTKYDKGSLIVHLYYSSVMKKNDRTNVQVQQFNKLALR 834

Query: 349 QRELL----EEFEQISSQDNNPQST 369
           + +LL    +E +   S  +N + +
Sbjct: 835 EYKLLKYNQKELQNFQSNLSNGKKS 859


>gnl|CDD|128567 smart00271, DnaJ, DnaJ molecular chaperone homology domain. 
          Length = 60

 Score = 93.8 bits (234), Expect = 6e-20
 Identities = 33/59 (55%), Positives = 48/59 (81%), Gaps = 1/59 (1%)

Query: 5  DFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDP-EAKEKFAQISEAYEVLRDPQK 62
          D+Y++LG+ R+A+  ++K A+R LA+KYHPD+N  D  EA+EKF +I+EAYEVL DP+K
Sbjct: 2  DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60


>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
           Provisional.
          Length = 1136

 Score = 51.7 bits (123), Expect = 4e-07
 Identities = 23/70 (32%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 6   FYQVLGIDRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRAL 65
           FY +LG+  NA  +++   +  LA  Y+P + R+  E   KF +I+EAY++L D  K+ +
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYPPK-RSGNEGFHKFKKINEAYQILGDIDKKKM 633

Query: 66  YDQGGHEALE 75
           Y++ G++ ++
Sbjct: 634 YNKFGYDGIK 643


>gnl|CDD|166894 PRK00294, hscB, co-chaperone HscB; Provisional.
          Length = 173

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 7/60 (11%)

Query: 20 QLKTAFRSLAMKYHPDQNRNDPE-----AKEKFAQISEAYEVLRDPQKRALY--DQGGHE 72
          QL T +R LA + HPD+  + PE     A E+ A ++EAY+ L+ P +RA Y     GHE
Sbjct: 22 QLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSGHE 81


>gnl|CDD|179598 PRK03578, hscB, co-chaperone HscB; Provisional.
          Length = 176

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 7/73 (9%)

Query: 1  MKKADFYQVLGIDRN-ATDRQ-LKTAFRSLAMKYHPDQNRNDPEAKEKFA-----QISEA 53
            K D + + G+    A D   L  A+R++  + HPD+     +A+++ A     + +EA
Sbjct: 3  SLKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEA 62

Query: 54 YEVLRDPQKRALY 66
          Y+ LRDP KRA Y
Sbjct: 63 YQTLRDPLKRARY 75


>gnl|CDD|181850 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional.
          Length = 267

 Score = 46.3 bits (111), Expect = 1e-05
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 7/62 (11%)

Query: 4   ADFYQVLGIDRNATDRQLKTAFRSLAMKYHPDQ--NRNDPE-----AKEKFAQISEAYEV 56
            D Y+VLG+  +  D+++K A+R L  ++HPD+   +  P      AKEK  +I  AYE+
Sbjct: 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYEL 259

Query: 57  LR 58
           ++
Sbjct: 260 IK 261


>gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional.
          Length = 171

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 5/52 (9%)

Query: 20 QLKTAFRSLAMKYHPDQNRNDPE-----AKEKFAQISEAYEVLRDPQKRALY 66
           L + ++ L  ++HPD+  N  E     A ++ A I++AY+ L+ P KRA Y
Sbjct: 19 LLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEY 70


>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional.
          Length = 166

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 7/68 (10%)

Query: 5  DFYQVLGI--DRNATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQIS----EAYEVLR 58
          +++Q+LG+  + N   + L+  + ++ +KYHPD+ +   E KE+   I+     AY  L+
Sbjct: 3  NYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQE-KEQNLIIASELNNAYSTLK 61

Query: 59 DPQKRALY 66
          D  KRA Y
Sbjct: 62 DALKRAEY 69


>gnl|CDD|129797 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB.  This
          model describes the small subunit, Hsc20 (20K heat
          shock cognate protein) of a pair of proteins
          Hsc66-Hsc20, related to the DnaK-DnaJ heat shock
          proteins, which also serve as molecular chaperones.
          Hsc20, unlike DnaJ, appears not to have chaperone
          activity on its own, but to act solely as a regulatory
          subunit for Hsc66 (i.e., to be a co-chaperone). The
          gene for Hsc20 in E. coli, hscB, is not induced by heat
          shock.
          Length = 157

 Score = 38.0 bits (88), Expect = 0.005
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 21 LKTAFRSLAMKYHPDQN-----RNDPEAKEKFAQISEAYEVLRDPQKRALY 66
          L   ++ L  +YHPD+      +    A ++   +++AY+ L+DP  RA Y
Sbjct: 8  LSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEY 58


>gnl|CDD|177528 PHA03102, PHA03102, Small T antigen; Reviewed.
          Length = 153

 Score = 36.6 bits (85), Expect = 0.011
 Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 8   QVLGIDRNA--TDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKRAL 65
            +LG+ R+A      ++ A+    +++HPD+  ++    EK  +++  Y+  R+  K   
Sbjct: 9   DLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDE----EKMKELNTLYKKFRESVKSLR 64

Query: 66  YDQGGHEALEYGAQSQGAGGFGAGMYGNSDFSELF 100
              G  E      +     G+    +G    + L+
Sbjct: 65  DLDG--EEDSSSEEEDVPSGYVGATFG-DRVNALY 96


>gnl|CDD|162959 TIGR02642, phage_xxxx, uncharacterized phage protein.  This
           uncharacterized protein is found in prophage regions of
           Shewanella oneidensis MR-1, Vibrio vulnificus YJ016,
           Yersinia pseudotuberculosis IP 32953, and Aeromonas
           hydrophila ATCC7966. It appears to have regions of
           sequence similarity to phage lambda antitermination
           protein Q.
          Length = 186

 Score = 32.2 bits (73), Expect = 0.25
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 153 KCSTCSGSGAKPGTNPMDCNICNGSGRVYTT 183
           KC  C G+G        +C+ C G+GR   T
Sbjct: 101 KCPRCRGTGLIQRRQR-ECDTCAGTGRFRPT 130



 Score = 32.2 bits (73), Expect = 0.26
 Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 4/29 (13%)

Query: 192 RACSTCRGSGQIIPHP---CSKCHGQGRV 217
             C  CRG+G +I      C  C G GR 
Sbjct: 100 CKCPRCRGTG-LIQRRQRECDTCAGTGRF 127


>gnl|CDD|162790 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family.  Characterized
           members of this protein family include benzoate-CoA
           ligase, 4-hydroxybenzoate-CoA ligase,
           2-aminobenzoate-CoA ligase, etc. Members are related to
           fatty acid and acetate CoA ligases.
          Length = 508

 Score = 31.7 bits (72), Expect = 0.30
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 233 DGTRIRLSGEGGAGVYGGAPGDLYI 257
            G R+RL G+GG  V  G PG+L I
Sbjct: 337 PGYRLRLVGDGGQDVAAGEPGELLI 361


>gnl|CDD|177441 PHA02624, PHA02624, large T antigen; Provisional.
          Length = 647

 Score = 30.7 bits (70), Expect = 0.62
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 13/77 (16%)

Query: 8  QVLGIDR----NATDRQLKTAFRSLAMKYHPDQNRNDPEAKEKFAQISEAYEVLRDPQKR 63
           +LG+      N     ++ A+     +YHPD+  ++    EK  +++  Y+ L++  K 
Sbjct: 15 DLLGLPMAAWGNLPL--MRKAYLRKCKEYHPDKGGDE----EKMKRLNSLYKKLQEGVKS 68

Query: 64 ALYDQGGHEALE---YG 77
          A    G  ++ E   YG
Sbjct: 69 ARQSFGTQDSSEIPTYG 85


>gnl|CDD|151679 pfam11237, DUF3038, Protein of unknown function (DUF3038).  This
           family of proteins with unknown function appear to be
           restricted to Cyanobacteria.
          Length = 171

 Score = 30.3 bits (69), Expect = 0.75
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 7/43 (16%)

Query: 345 LNKRQ----RELLEEFEQISSQDNNPQSTGFFARMKDFFDSLK 383
           L KR     R+LL   EQ+SSQ+  P  T     + ++ D  +
Sbjct: 79  LAKRLYPLIRQLLLLLEQMSSQEPPPLQT---QLLSEYLDRFR 118


>gnl|CDD|182039 PRK09706, PRK09706, transcriptional repressor DicA; Reviewed.
          Length = 135

 Score = 30.2 bits (68), Expect = 0.81
 Identities = 13/42 (30%), Positives = 26/42 (61%)

Query: 337 VQVETPQKLNKRQRELLEEFEQISSQDNNPQSTGFFARMKDF 378
           V +  P +L++ Q+ELLE F+ +   + + Q +   AR+++F
Sbjct: 77  VPLNQPVELSEDQKELLELFDALPESEQDAQLSEMRARVENF 118


>gnl|CDD|182098 PRK09828, PRK09828, putative fimbrial outer membrane usher protein;
           Provisional.
          Length = 865

 Score = 30.5 bits (69), Expect = 0.84
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 285 VAMGGTFDVATLDATHSRVTIPE-GTQTGKQFRL 317
           + M  +      D THS   IP+  T  G+ +RL
Sbjct: 413 LGMNTSVGAFAFDVTHSNAEIPDDKTYQGQSYRL 446


>gnl|CDD|180564 PRK06446, PRK06446, hypothetical protein; Provisional.
          Length = 436

 Score = 30.1 bits (68), Expect = 0.94
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 320 KGMPVINSGRKGDLYVQVQVETPQK 344
           KG P I  G KG LYV++ + T  K
Sbjct: 169 KGRPQIVLGVKGLLYVELVLRTGTK 193


>gnl|CDD|162275 TIGR01263, 4HPPD, 4-hydroxyphenylpyruvate dioxygenase.  This
           protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and
           phenylalanine catabolite, to homogentisate.
           Homogentisate can undergo a further non-enzymatic
           oxidation and polymerization into brown pigments that
           protect some bacterial species from light. A similar
           process occurs spontaneously in blood and is hemolytic
           (see PubMed:8000039). In some bacterial species, this
           enzyme has been studied as a hemolysin.
          Length = 353

 Score = 28.8 bits (65), Expect = 2.8
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 5/25 (20%)

Query: 79  QSQGAGGFGAGMYGNSDFSELFEGI 103
           Q +GAGGFG G     +F  LFE I
Sbjct: 324 QRKGAGGFGEG-----NFKALFEAI 343


>gnl|CDD|182916 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase;
           Provisional.
          Length = 741

 Score = 28.4 bits (64), Expect = 3.1
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 4/24 (16%)

Query: 285 VAMGGTFDVA--TLDA--THSRVT 304
           +AMG   DVA  T DA  TH+R+ 
Sbjct: 651 IAMGSGTDVALETADAALTHNRLR 674


>gnl|CDD|184095 PRK13504, PRK13504, sulfite reductase subunit beta; Provisional.
          Length = 569

 Score = 28.6 bits (65), Expect = 3.2
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 10/59 (16%)

Query: 18  DRQLKTAFRSLAMKYHPD----QNRN------DPEAKEKFAQISEAYEVLRDPQKRALY 66
            R LKT  R +A  +  D     N+N       P  K K   +   Y ++   ++  L 
Sbjct: 370 GRPLKTGLREIAKIHKGDFRLTANQNLIIANVPPSDKAKIEALLREYGLIDGVEESPLR 428


>gnl|CDD|118803 pfam10279, Latarcin, Latarcin precursor.  This family represents
           the precursor proteins for a number of short
           antimicrobial peptides called Latarcins. Latarcins were
           discovered in the venom of the spider Lachesana
           tarabaevi. Latarcins are likely to adopt amphipathic
           alpha-helical structure in the plasma membrane.
          Length = 88

 Score = 28.3 bits (63), Expect = 3.6
 Identities = 7/34 (20%), Positives = 18/34 (52%)

Query: 351 ELLEEFEQISSQDNNPQSTGFFARMKDFFDSLKN 384
           ++ E  E++   +N  ++ GFF ++K+     + 
Sbjct: 49  DIAEALEKLEDFENTEEARGFFGKLKEKLKKFRE 82


>gnl|CDD|151545 pfam11101, DUF2884, Protein of unknown function (DUF2884).  Some
           members in this bacterial family of proteins are
           annotated as YggN which currently has no known function.
          Length = 229

 Score = 28.1 bits (63), Expect = 3.7
 Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 311 TGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQ 358
             +   +  K  P       G L+V  +      L+  Q++ LE++  
Sbjct: 12  DPQSLEVVDKSGPKYQIDEDGQLFVDGK---WVTLSADQQQALEQYSD 56


>gnl|CDD|165115 PHA02748, PHA02748, viral inexin-like protein; Provisional.
          Length = 360

 Score = 28.1 bits (63), Expect = 4.0
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)

Query: 167 NPMDCNIC---NGSGRVYTTAQSFFSIERACSTCRGSGQIIPHP 207
           +P+DC+     NGS   Y   QS F +ER           +P P
Sbjct: 50  DPIDCDFPDYPNGSLNTYCYVQSTFLVER--KVTHTVNSTVPDP 91


>gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
          Length = 1809

 Score = 28.3 bits (63), Expect = 4.1
 Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 6/28 (21%)

Query: 193 ACSTCRGSGQII------PHPCSKCHGQ 214
           AC+ C+G G I         PC  C G+
Sbjct: 722 ACAECQGLGSITTTDNRTSIPCPSCLGK 749


>gnl|CDD|184529 PRK14133, PRK14133, DNA polymerase IV; Provisional.
          Length = 347

 Score = 27.8 bits (62), Expect = 4.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 205 PHPCSKCHGQGRVSEEKLLSVNV 227
           P P SK HG G+ S EKL ++ +
Sbjct: 172 PLPISKVHGIGKKSVEKLNNIGI 194


>gnl|CDD|180310 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
          Length = 509

 Score = 27.7 bits (62), Expect = 4.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 339 VETPQKLNKRQRELLEE 355
           VET  KL + +RELL+E
Sbjct: 354 VETINKLGRIERELLQE 370


>gnl|CDD|148612 pfam07104, DUF1366, Protein of unknown function (DUF1366).  This
           family consists of several hypothetical Streptococcus
           thermophilus bacteriophage proteins of around 130
           residues in length. One of the sequences in this family,
           from phage Sfi11 is known as Gp149. The function of this
           family is unknown.
          Length = 119

 Score = 27.6 bits (61), Expect = 5.4
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 301 SRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQVETPQKLNKRQRELLEEFEQIS 360
           S   + + + +  +  L        +     ++ V +  E    ++K   E L+E E+I 
Sbjct: 8   SPEYLEDKSISATKVILAN-----RDPHVGANVPVFLPAE---FIDKSFAETLKECEKII 59

Query: 361 SQDNNPQ 367
            Q+  PQ
Sbjct: 60  YQELFPQ 66


>gnl|CDD|185184 PRK15284, PRK15284, putative fimbrial outer membrane usher protein
           StfC; Provisional.
          Length = 881

 Score = 27.5 bits (61), Expect = 6.6
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 5/35 (14%)

Query: 284 TVAMGGTFDVATL-----DATHSRVTIPEGTQTGK 313
           + A+G   D+A       D THS   + + +  GK
Sbjct: 417 SAALGVGRDLALFGAVAFDVTHSHTKLDKDSAYGK 451


>gnl|CDD|178463 PLN02875, PLN02875, 4-hydroxyphenylpyruvate dioxygenase.
          Length = 398

 Score = 27.3 bits (61), Expect = 7.2
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 5/25 (20%)

Query: 79  QSQGAGGFGAGMYGNSDFSELFEGI 103
           Q+ G GGFG G     +FSELF+ I
Sbjct: 370 QAGGCGGFGKG-----NFSELFKSI 389


>gnl|CDD|181824 PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component;
           Reviewed.
          Length = 924

 Score = 27.0 bits (61), Expect = 8.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)

Query: 231 VDDGTRIRLSGE 242
           +D+G  +RLSG+
Sbjct: 598 LDEGYPVRLSGQ 609


>gnl|CDD|161731 TIGR00145, TIGR00145, FTR1 family protein.  A characterized member
           from yeast acts as oxidase-coupled high affinity iron
           transporter. Note that the apparent member from E. coli
           K12-MG1655 has a frameshift by homology with member
           sequences from other species.
          Length = 283

 Score = 27.0 bits (60), Expect = 8.4
 Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 14/70 (20%)

Query: 78  AQSQGAGGFGAGMYGNS---DFSELFEGIFGGIMGSGRSY-----KRSSSTGEAGADLRY 129
           A     G    G YG+    +F EL EGIFG I     SY      R           R 
Sbjct: 50  AACLAIGIGVIGAYGSLQKDEFKELLEGIFGVIAVVMLSYMGLWMLRMQR------KWRV 103

Query: 130 NLEISLEEAF 139
            +E  L +A 
Sbjct: 104 KIERQLVQAL 113


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.317    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0487    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,368,584
Number of extensions: 414577
Number of successful extensions: 1302
Number of sequences better than 10.0: 1
Number of HSP's gapped: 923
Number of HSP's successfully gapped: 73
Length of query: 384
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 289
Effective length of database: 3,941,713
Effective search space: 1139155057
Effective search space used: 1139155057
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.7 bits)