Query gi|254780639|ref|YP_003065052.1| hypothetical protein CLIBASIA_02630 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 39
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 08:36:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780639.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j5pa4 c.2.1.3 (A:-1-108,A:22 8.5 68 0.0049 13.6 1.4 30 5-34 73-105 (132)
2 d2vvpa1 c.121.1.1 (A:3-158) Al 8.2 54 0.0039 14.1 0.8 24 14-37 119-143 (156)
3 d1t0ga_ d.120.1.2 (A:) Putativ 6.9 90 0.0066 13.0 1.6 13 13-25 86-98 (109)
4 d2i5ua1 a.275.1.1 (A:2-75) Unc 5.7 82 0.006 13.2 0.7 21 4-25 9-29 (74)
5 d1wixa_ a.40.3.1 (A:) Hook hom 5.3 33 0.0024 15.3 -1.5 15 16-30 13-27 (164)
6 d2a6qa1 d.306.1.1 (A:10-92) An 5.3 1.1E+02 0.0083 12.4 3.2 23 6-28 34-56 (83)
7 d1xe7a_ b.82.1.16 (A:) Hypothe 3.9 76 0.0056 13.4 -0.5 21 8-28 12-33 (194)
8 d2baya1 g.44.1.2 (A:1-56) Pre- 3.6 1.5E+02 0.011 11.7 1.9 15 10-24 21-35 (56)
9 d1yb3a1 d.296.1.2 (A:2-167) Hy 3.3 1.6E+02 0.012 11.6 1.6 17 18-34 11-27 (166)
10 d1ucva_ a.60.1.2 (A:) Ephrin t 3.2 1.4E+02 0.01 11.9 0.4 16 13-28 6-21 (81)
No 1
>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643 {Thermotoga maritima [TaxId: 2336]}
Probab=8.45 E-value=68 Score=13.62 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=22.8
Q ss_pred CCEEEEEEEHHHHHH---HHHHHHHHHHHHHHH
Q ss_conf 403776652366999---999988548841477
Q gi|254780639|r 5 YGISVVMMEKTAIQD---WIETFELGKEHGRKL 34 (39)
Q Consensus 5 ygisvvmmektaiqd---wietfelgkehgrkl 34 (39)
-|+.|+.+.+.++.| +-+.+++.+++|.++
T Consensus 73 ~gk~vvi~s~~~lad~~~~~~l~~~A~~~g~~i 105 (132)
T d1j5pa4 73 NPVNYIIISTSAFADEVFRERFFSELKNSPARV 105 (132)
T ss_dssp SSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEE
T ss_pred CCCCEEEECCHHHCCHHHHHHHHHHHHHCCCEE
T ss_conf 179889953604304269999999999849979
No 2
>d2vvpa1 c.121.1.1 (A:3-158) Alternate ribose 5-phosphate isomerase B, RpiB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=8.21 E-value=54 Score=14.14 Aligned_cols=24 Identities=13% Similarity=0.405 Sum_probs=16.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHH
Q ss_conf 3669999999-88548841477751
Q gi|254780639|r 14 KTAIQDWIET-FELGKEHGRKLEKT 37 (39)
Q Consensus 14 ktaiqdwiet-felgkehgrklekt 37 (39)
+.-+..|++| |.-|-.|.|+++|-
T Consensus 119 ~~iv~~~l~t~F~~ggRh~~Rv~ki 143 (156)
T d2vvpa1 119 LAIVDAFVTTPWSKAQRHQRRIDIL 143 (156)
T ss_dssp HHHHHHHHHSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 9999999869999987289999999
No 3
>d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=6.93 E-value=90 Score=12.96 Aligned_cols=13 Identities=38% Similarity=0.843 Sum_probs=10.5
Q ss_pred EHHHHHHHHHHHH
Q ss_conf 2366999999988
Q gi|254780639|r 13 EKTAIQDWIETFE 25 (39)
Q Consensus 13 ektaiqdwietfe 25 (39)
|...+++|.+.|+
T Consensus 86 e~~~L~~W~~~f~ 98 (109)
T d1t0ga_ 86 EINTLNDWETKFE 98 (109)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999996
No 4
>d2i5ua1 a.275.1.1 (A:2-75) Uncaracterized protein EF2839 {Enterococcus faecalis [TaxId: 1351]}
Probab=5.69 E-value=82 Score=13.19 Aligned_cols=21 Identities=33% Similarity=0.757 Sum_probs=14.5
Q ss_pred CCCEEEEEEEHHHHHHHHHHHH
Q ss_conf 6403776652366999999988
Q gi|254780639|r 4 GYGISVVMMEKTAIQDWIETFE 25 (39)
Q Consensus 4 gygisvvmmektaiqdwietfe 25 (39)
|+|. +--++-..|..|++.|+
T Consensus 9 gfG~-lsp~~~e~i~~wlddf~ 29 (74)
T d2i5ua1 9 GFGL-MSSKTMTDFDYWISDFE 29 (74)
T ss_dssp TSCS-CCHHHHHHHHHHHHHHH
T ss_pred CCCC-CCHHHHHHHHHHHHHHH
T ss_conf 8877-58999999999999863
No 5
>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.29 E-value=33 Score=15.26 Aligned_cols=15 Identities=20% Similarity=0.559 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 699999998854884
Q gi|254780639|r 16 AIQDWIETFELGKEH 30 (39)
Q Consensus 16 aiqdwietfelgkeh 30 (39)
|+-.|+.||+++..+
T Consensus 13 aLv~W~~tf~~~~~~ 27 (164)
T d1wixa_ 13 SLIIWLQTFKTASPC 27 (164)
T ss_dssp HHHHHHTTCCCSSCC
T ss_pred HHHHHHHHCCCCCCC
T ss_conf 999999985897666
No 6
>d2a6qa1 d.306.1.1 (A:10-92) Antitoxin YefM {Escherichia coli [TaxId: 562]}
Probab=5.26 E-value=1.1e+02 Score=12.43 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=18.7
Q ss_pred CEEEEEEEHHHHHHHHHHHHHHH
Q ss_conf 03776652366999999988548
Q gi|254780639|r 6 GISVVMMEKTAIQDWIETFELGK 28 (39)
Q Consensus 6 gisvvmmektaiqdwietfelgk 28 (39)
+-++|+|-......|.||..|=.
T Consensus 34 ~~~~VliS~~d~~sl~ETl~lls 56 (83)
T d2a6qa1 34 GEACVLMSLEEYNSLEETAYLLR 56 (83)
T ss_dssp SCEEEEEEHHHHHHHHHHHHHHH
T ss_pred CCCEEEECHHHHHHHHHHHHHHC
T ss_conf 98758857999999999999971
No 7
>d1xe7a_ b.82.1.16 (A:) Hypothetical protein YML079W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.93 E-value=76 Score=13.35 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=13.4
Q ss_pred EEEEEEHH-HHHHHHHHHHHHH
Q ss_conf 77665236-6999999988548
Q gi|254780639|r 8 SVVMMEKT-AIQDWIETFELGK 28 (39)
Q Consensus 8 svvmmekt-aiqdwietfelgk 28 (39)
++-|.+.. .+|+||+.+.|-.
T Consensus 12 ~~~~~~p~~~~~~lI~~L~L~p 33 (194)
T d1xe7a_ 12 KVPMPEPPSSLQQLINDWQLIK 33 (194)
T ss_dssp HSCCSSCCHHHHHHHHHHTCEE
T ss_pred CCCCCCCCHHHHHHHHHCCCCC
T ss_conf 3678998177999999869951
No 8
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.62 E-value=1.5e+02 Score=11.73 Aligned_cols=15 Identities=13% Similarity=0.507 Sum_probs=11.8
Q ss_pred EEEEHHHHHHHHHHH
Q ss_conf 665236699999998
Q gi|254780639|r 10 VMMEKTAIQDWIETF 24 (39)
Q Consensus 10 vmmektaiqdwietf 24 (39)
...++.+|++|++..
T Consensus 21 h~fc~~cI~~~l~~~ 35 (56)
T d2baya1 21 TIFEKSLLEQYVKDT 35 (56)
T ss_dssp EEEEHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHC
T ss_conf 845599999987603
No 9
>d1yb3a1 d.296.1.2 (A:2-167) Hypothetical protein PF0168 {Pyrococcus furiosus [TaxId: 2261]}
Probab=3.34 E-value=1.6e+02 Score=11.58 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999988548841477
Q gi|254780639|r 18 QDWIETFELGKEHGRKL 34 (39)
Q Consensus 18 qdwietfelgkehgrkl 34 (39)
.-|+++|.|..|--..|
T Consensus 11 ~iw~eiF~Lneelkeel 27 (166)
T d1yb3a1 11 RIWGDIFELREELKEEL 27 (166)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 99999998779999880
No 10
>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.24 E-value=1.4e+02 Score=11.95 Aligned_cols=16 Identities=19% Similarity=0.831 Sum_probs=11.2
Q ss_pred EHHHHHHHHHHHHHHH
Q ss_conf 2366999999988548
Q gi|254780639|r 13 EKTAIQDWIETFELGK 28 (39)
Q Consensus 13 ektaiqdwietfelgk 28 (39)
..+.+++|.+...|.+
T Consensus 6 ~~~sV~~WL~~lgL~q 21 (81)
T d1ucva_ 6 SGLTVGDWLDSIRMGR 21 (81)
T ss_dssp CCSBHHHHHHHTTCGG
T ss_pred CCCCHHHHHHHCCCHH
T ss_conf 9872999998886499
Done!