RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780639|ref|YP_003065052.1| hypothetical protein CLIBASIA_02630 [Candidatus Liberibacter asiaticus str. psy62] (39 letters) >gnl|CDD|185224 PRK15324, PRK15324, type III secretion system lipoprotein PrgK; Provisional. Length = 252 Score = 26.2 bits (57), Expect = 2.3 Identities = 10/23 (43%), Positives = 15/23 (65%) Query: 4 GYGISVVMMEKTAIQDWIETFEL 26 GY I+V + TA WI+T++L Sbjct: 55 GYSITVAEPDFTAAVYWIKTYQL 77 >gnl|CDD|180400 PRK06102, PRK06102, hypothetical protein; Provisional. Length = 452 Score = 25.4 bits (56), Expect = 3.7 Identities = 6/22 (27%), Positives = 11/22 (50%) Query: 10 VMMEKTAIQDWIETFELGKEHG 31 ++E+ A + E +L HG Sbjct: 281 ALVERQAFPAFQEILDLIARHG 302 >gnl|CDD|182091 PRK09814, PRK09814, beta-1,6-galactofuranosyltransferase; Provisional. Length = 333 Score = 24.9 bits (55), Expect = 4.3 Identities = 9/22 (40%), Positives = 13/22 (59%) Query: 6 GISVVMMEKTAIQDWIETFELG 27 G+ V++ K AI D+I LG Sbjct: 260 GLPVIVWSKAAIADFIVENGLG 281 >gnl|CDD|137204 PRK09310, aroDE, bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed. Length = 477 Score = 24.8 bits (54), Expect = 5.9 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 4/33 (12%) Query: 6 GISVVMMEKTAIQDWIETFELGKEHGRKLEKTC 38 G+SV M KTA+ D+++ + KL +C Sbjct: 271 GLSVTMPLKTAVLDFLDKL----DPSVKLCGSC 299 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.136 0.427 Gapped Lambda K H 0.267 0.0545 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 605,096 Number of extensions: 18809 Number of successful extensions: 39 Number of sequences better than 10.0: 1 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 5 Length of query: 39 Length of database: 5,994,473 Length adjustment: 13 Effective length of query: 26 Effective length of database: 5,713,569 Effective search space: 148552794 Effective search space used: 148552794 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.5 bits)