BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780639|ref|YP_003065052.1| hypothetical protein
CLIBASIA_02630 [Candidatus Liberibacter asiaticus str. psy62]
         (39 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780639|ref|YP_003065052.1| hypothetical protein CLIBASIA_02630 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 39

 Score = 82.0 bits (201), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 39/39 (100%), Positives = 39/39 (100%)

Query: 1  MGEGYGISVVMMEKTAIQDWIETFELGKEHGRKLEKTCC 39
          MGEGYGISVVMMEKTAIQDWIETFELGKEHGRKLEKTCC
Sbjct: 1  MGEGYGISVVMMEKTAIQDWIETFELGKEHGRKLEKTCC 39


>gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 429

 Score = 21.2 bits (43), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 3  EGYGISVVMMEKTAIQDWIETFELGKEHGR 32
          E  G+SV +     +  W E F LG + GR
Sbjct: 47 ETSGLSVHVHTSPHLIRWNERFRLGVKGGR 76


>gi|254780634|ref|YP_003065047.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 429

 Score = 20.8 bits (42), Expect = 4.9,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 15  TAIQDWIETFELGKEHGRKLEKTCC 39
           + I DW + ++L       +E  CC
Sbjct: 384 SIIDDWNQLYDLKNHPSLFIENGCC 408


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.136    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,290
Number of Sequences: 1233
Number of extensions: 477
Number of successful extensions: 3
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 39
length of database: 328,796
effective HSP length: 13
effective length of query: 26
effective length of database: 312,767
effective search space:  8131942
effective search space used:  8131942
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 31 (16.5 bits)