HHsearch alignment for GI: 254780640 and conserved domain: TIGR00618
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=99.67 E-value=4.3e-17 Score=105.25 Aligned_cols=82 Identities=27% Similarity=0.446 Sum_probs=65.7
Q ss_pred EEEEEEEEECEECCCCCEEEECCC------CEEEEEECCCCCHHHHHHHHHHHHCCC-CCCCCCHHHHHHC-----CCCC
Q ss_conf 899899995401368317998689------869999079865789999999985797-7564331333102-----4457
Q gi|254780640|r 27 FKLLDIEISHFRGFTEIQKIEFAD------HLTIVNGQNGYGKSSLSEAIEWLFYGY-TQRRKHGDSIKKR-----SIKT 94 (110)
Q Consensus 27 ~kl~~i~i~nFr~f~~~~~i~f~~------~~~~i~G~Ng~GKStil~ai~~~l~g~-~~~~~~~d~i~~~-----s~~~ 94 (110)
T Consensus 1 m~pl~L~lkn~~~y~~~~~~dfT~~~fasl~~f~i~G~tGAGKtsLldAI~yALYGkP~~~~s~~~~~~~~~~~~~~~~~ 80 (1063)
T TIGR00618 1 MKPLKLELKNFTSYKGESVIDFTALGFASLKLFVICGKTGAGKTSLLDAITYALYGKPVPRESEVVASKNSLSRADSEEA 80 (1063)
T ss_pred CCCCEEEECCCCCCCCCCEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 96534764063534576101027887212573677788998354599999998728887751467888754200107877
Q ss_pred CCEEEEEECCCEEE
Q ss_conf 41278996285567
Q gi|254780640|r 95 PMPMCMAVPRCKYQ 108 (110)
Q Consensus 95 pi~l~~~v~~~~y~ 108 (110)
T Consensus 81 ~~~lef~~~~~~yR 94 (1063)
T TIGR00618 81 LAELEFALDTKLYR 94 (1063)
T ss_pred HHHHHHEECCCHHH
T ss_conf 65464013560114