HHsearch alignment for GI: 254780640 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.11 E-value=0.042 Score=30.29 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 699990798657899999999857
Q gi|254780640|r 52 LTIVNGQNGYGKSSLSEAIEWLFY 75 (110)
Q Consensus 52 ~~~i~G~Ng~GKStil~ai~~~l~ 75 (110)
T Consensus 27 nIlIsG~tGSGKTTll~al~~~i~ 50 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 899989999989999999996133