HHsearch alignment for GI: 254780640 and conserved domain: cd03222
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.17 E-value=0.00031 Score=40.93 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=22.6
Q ss_pred CCC-CEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 689-8699990798657899999999857
Q gi|254780640|r 48 FAD-HLTIVNGQNGYGKSSLSEAIEWLFY 75 (110)
Q Consensus 48 f~~-~~~~i~G~Ng~GKStil~ai~~~l~ 75 (110)
T Consensus 22 v~~GEiv~ilGpNGaGKSTllk~i~G~l~ 50 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 58998999989999999999999968867