HHsearch alignment for GI: 254780640 and conserved domain: cd03238
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.52 E-value=0.00014 Score=42.64 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=25.5
Q ss_pred CEECCCCCEEEECCC-CEEEEEECCCCCHHHHHHHHHH
Q ss_conf 401368317998689-8699990798657899999999
Q gi|254780640|r 36 HFRGFTEIQKIEFAD-HLTIVNGQNGYGKSSLSEAIEW 72 (110)
Q Consensus 36 nFr~f~~~~~i~f~~-~~~~i~G~Ng~GKStil~ai~~ 72 (110)
T Consensus 7 ~~~aL~~-isl~i~~Ge~~~iiG~nGsGKSTLl~~~~~ 43 (176)
T cd03238 7 NVHNLQN-LDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEECCCC-EEEEECCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 5354675-487888998999999999989999998887