HHsearch alignment for GI: 254780640 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.14 E-value=0.00046 Score=40.08 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=25.0
Q ss_pred EEECCC-CEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 998689-8699990798657899999999857
Q gi|254780640|r 45 KIEFAD-HLTIVNGQNGYGKSSLSEAIEWLFY 75 (110)
Q Consensus 45 ~i~f~~-~~~~i~G~Ng~GKStil~ai~~~l~ 75 (110)
T Consensus 34 s~~i~~Ge~vaIvG~sGsGKSTL~~ll~gl~~ 65 (226)
T cd03248 34 SFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 89982999999999999849999999964546