HHsearch alignment for GI: 254780640 and conserved domain: cd03270
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.02 E-value=0.00062 Score=39.46 Aligned_cols=24 Identities=33% Similarity=0.655 Sum_probs=19.1
Q ss_pred EEEECCC-CEEEEEECCCCCHHHHH
Q ss_conf 7998689-86999907986578999
Q gi|254780640|r 44 QKIEFAD-HLTIVNGQNGYGKSSLS 67 (110)
Q Consensus 44 ~~i~f~~-~~~~i~G~Ng~GKStil 67 (110)
T Consensus 14 Vsl~i~~Ge~~aIvG~nGsGKSTL~ 38 (226)
T cd03270 14 VDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHH
T ss_conf 4899859989999878996098983