HHsearch alignment for GI: 254780640 and conserved domain: cd03271
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.61 E-value=8.5e-05 Score=43.77 Aligned_cols=28 Identities=36% Similarity=0.398 Sum_probs=22.1
Q ss_pred EEEECCC-CEEEEEECCCCCHHHHHHHHH
Q ss_conf 7998689-869999079865789999999
Q gi|254780640|r 44 QKIEFAD-HLTIVNGQNGYGKSSLSEAIE 71 (110)
Q Consensus 44 ~~i~f~~-~~~~i~G~Ng~GKStil~ai~ 71 (110)
T Consensus 14 vsl~i~~G~~~aIiG~sGsGKSTLl~~~L 42 (261)
T cd03271 14 IDVDIPLGVLTCVTGVSGSGKSSLINDTL 42 (261)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 58898899999998799986999999998