HHsearch alignment for GI: 254780640 and conserved domain: cd03293

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45  E-value=0.00011  Score=43.15  Aligned_cols=32  Identities=25%  Similarity=0.337  Sum_probs=25.6

Q ss_pred             EEECCC-CEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             998689-86999907986578999999998579
Q gi|254780640|r   45 KIEFAD-HLTIVNGQNGYGKSSLSEAIEWLFYG   76 (110)
Q Consensus        45 ~i~f~~-~~~~i~G~Ng~GKStil~ai~~~l~g   76 (110)
T Consensus        24 sl~i~~Ge~~~iiGpsGsGKSTLl~~i~Gl~~p   56 (220)
T cd03293          24 SLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP   56 (220)
T ss_pred             EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf             889879989999999995799999999759998