HHsearch alignment for GI: 254780640 and conserved domain: cd03294
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.88 E-value=0.00059 Score=39.56 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=25.0
Q ss_pred EEECCC-CEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 998689-86999907986578999999998579
Q gi|254780640|r 45 KIEFAD-HLTIVNGQNGYGKSSLSEAIEWLFYG 76 (110)
Q Consensus 45 ~i~f~~-~~~~i~G~Ng~GKStil~ai~~~l~g 76 (110)
T Consensus 44 sl~i~~GE~~~ivG~SGsGKSTLLr~i~GL~~p 76 (269)
T cd03294 44 SLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP 76 (269)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 758889999999989984899999999759999