BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780640|ref|YP_003065053.1| hypothetical protein
CLIBASIA_02635 [Candidatus Liberibacter asiaticus str. psy62]
         (110 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780640|ref|YP_003065053.1| hypothetical protein CLIBASIA_02635 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 110

 Score =  231 bits (589), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MTRLRKKNTCACLSKSLTSYYARKLIFKLLDIEISHFRGFTEIQKIEFADHLTIVNGQNG 60
           MTRLRKKNTCACLSKSLTSYYARKLIFKLLDIEISHFRGFTEIQKIEFADHLTIVNGQNG
Sbjct: 1   MTRLRKKNTCACLSKSLTSYYARKLIFKLLDIEISHFRGFTEIQKIEFADHLTIVNGQNG 60

Query: 61  YGKSSLSEAIEWLFYGYTQRRKHGDSIKKRSIKTPMPMCMAVPRCKYQLK 110
           YGKSSLSEAIEWLFYGYTQRRKHGDSIKKRSIKTPMPMCMAVPRCKYQLK
Sbjct: 61  YGKSSLSEAIEWLFYGYTQRRKHGDSIKKRSIKTPMPMCMAVPRCKYQLK 110


>gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 375

 Score = 34.3 bits (77), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 28 KLLDIEISHFRGFTEIQKIEFADHLTIVNGQNGYGKSSLSEAIEWLFYGYTQRR 81
          K+  + IS FR +  ++ +  A H TI  G NG GK+++ EAI +L  G   RR
Sbjct: 6  KIKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFLSPGRGFRR 58


>gi|255764514|ref|YP_003065586.2| DNA repair protein RecN [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 554

 Score = 25.0 bits (53), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 46 IEFADHLTIVNGQNGYGKSSLSEAI 70
          I+F+  L+I++G  G GKS L +A+
Sbjct: 17 IDFSAGLSILSGDTGSGKSILLDAL 41


>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 249

 Score = 24.6 bits (52), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 28 KLLDIEISHFRGFTEIQKIEFADHLTIVNGQNGYGKSSLS 67
          K++D +    RG     K+E ++ + I+ G NG GKS+LS
Sbjct: 10 KIVDTDTEIIRGLN--LKVEPSEVVAIM-GPNGSGKSTLS 46


>gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1386

 Score = 22.7 bits (47), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 12  CLSKSLTSYYARKLIFKLLDIEISHFRGFTEIQKIE 47
           CL + LT     K+  +L+  ++  F G   I+ I+
Sbjct: 91  CLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIK 126


>gi|254780327|ref|YP_003064740.1| preprotein translocase subunit SecA [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 890

 Score = 21.2 bits (43), Expect = 4.4,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 15 KSLTSYYARKLIFKLLDIEISHF 37
          + L  YYA+ +    L+ EISH 
Sbjct: 19 RRLRPYYAKVIAINELEKEISHL 41


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.324    0.136    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,559
Number of Sequences: 1233
Number of extensions: 2426
Number of successful extensions: 10
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 8
length of query: 110
length of database: 328,796
effective HSP length: 63
effective length of query: 47
effective length of database: 251,117
effective search space: 11802499
effective search space used: 11802499
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 32 (16.9 bits)