Query gi|254780641|ref|YP_003065054.1| hypothetical protein CLIBASIA_02640 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 121
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 14:54:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780641.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2qkd_A Zinc finger protein ZP 40.6 14 0.00042 18.5 1.7 20 23-42 91-110 (136)
2 >2qkd_A Zinc finger protein ZP 35.7 20 0.00058 17.7 1.8 20 23-42 89-108 (127)
3 >1x5b_A Signal transducing ada 31.3 42 0.0012 15.7 4.0 52 67-118 24-80 (87)
4 >1z0j_B FYVE-finger-containing 31.1 42 0.0012 15.7 2.8 44 53-104 12-56 (59)
5 >1dvp_A HRS, hepatocyte growth 25.4 54 0.0016 15.1 3.7 51 68-118 15-70 (99)
6 >2eqy_A RBP2 like, jumonji, at 21.5 58 0.0017 14.9 2.1 55 42-96 35-89 (122)
7 >1yzm_A FYVE-finger-containing 19.5 69 0.002 14.5 2.1 24 79-102 24-47 (51)
8 >1z0k_B FYVE-finger-containing 17.6 79 0.0023 14.1 2.7 43 53-103 23-66 (69)
9 >1utg_A Uteroglobin; steroid b 16.9 82 0.0024 14.0 3.5 28 93-120 19-47 (70)
10 >2qrd_G Protein C1556.08C; AMP 15.9 62 0.0018 14.7 1.2 43 56-104 10-52 (181)
No 1
>>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus} (A:269-404)
Probab=40.56 E-value=14 Score=18.49 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=17.2
Q ss_pred HCCCCCEEEEECCCCCCCHH
Q ss_conf 41788448762388888301
Q gi|254780641|r 23 EKGEGSFTLIDDIPSGNDFK 42 (121)
Q Consensus 23 ekgegsftliddipsgndfk 42 (121)
-.|+-.||||=|=|+||-|-
T Consensus 91 ~~g~~pfTliidDP~GnS~I 110 (136)
T 2qkd_A 91 IEGKMKAHFIMNDPAGNSYL 110 (136)
T ss_dssp HTTSSCEEEEEEETTCCCEE
T ss_pred HCCCCCEEEEEECCCCCCEE
T ss_conf 72898659999788767214
No 2
>>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus} (A:62-188)
Probab=35.70 E-value=20 Score=17.65 Aligned_cols=20 Identities=45% Similarity=0.662 Sum_probs=16.7
Q ss_pred HCCCCCEEEEECCCCCCCHH
Q ss_conf 41788448762388888301
Q gi|254780641|r 23 EKGEGSFTLIDDIPSGNDFK 42 (121)
Q Consensus 23 ekgegsftliddipsgndfk 42 (121)
-.|+..||||=|=|+||-|-
T Consensus 89 ~~g~~pfTliidDP~GnS~I 108 (127)
T 2qkd_A 89 KQMASPFTLVIDDPSGNSFV 108 (127)
T ss_dssp GGCSSCEEEEEEETTSCCEE
T ss_pred HCCCCCEEEEEECCCCCCCC
T ss_conf 64798769999889997001
No 3
>>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} (A:1-87)
Probab=31.34 E-value=42 Score=15.71 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 37541255687654222356-----69999999999975118502477776798762
Q gi|254780641|r 67 ITPKNRRDKLSDILGFGEMT-----SLKTALRELQQSLQSRKPNMVSAAMDPLKKCV 118 (121)
Q Consensus 67 itpknrrdklsdilgfgemt-----slktalrelqqslqsrkpnmvsaamdplkkcv 118 (121)
-.|.+..+..+-|+.+-++- .-+.|.|-|..-++++.|+.+--|..-|.-||
T Consensus 24 T~~~l~~~Dw~~il~icD~In~~~~~~k~a~ral~kri~~~n~~v~l~AL~lLe~~v 80 (87)
T 1x5b_A 24 TNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACV 80 (87)
T ss_dssp TCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 187788867999999999997697339999999999965998899999999999999
No 4
>>1z0j_B FYVE-finger-containing RAB5 effector protein rabenosyn-5, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} (B:)
Probab=31.13 E-value=42 Score=15.75 Aligned_cols=44 Identities=25% Similarity=0.403 Sum_probs=31.9
Q ss_pred HHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 56676887-77774137541255687654222356699999999999751185
Q gi|254780641|r 53 YPVVAQKE-LQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRKP 104 (121)
Q Consensus 53 ypvvaqke-lqsfihitpknrrdklsdilgfgemtslktalrelqqslqsrkp 104 (121)
-|..-|.. +.+||.-....|| |-|+..|...||||+.-+...+-
T Consensus 12 dPL~eQ~~~i~~yI~qAk~~~r--------fdEV~tL~~NL~EL~~E~~~~q~ 56 (59)
T 1z0j_B 12 ELLLQQIDNIKAYIFDAKQCGR--------LDEVEVLTENLRELKHTLAKQKG 56 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSC--------HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999998868999632674075--------46999999999999999998637
No 5
>>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix; HET: CIT; 2.00A {Drosophila melanogaster} (A:1-83,A:193-208)
Probab=25.44 E-value=54 Score=15.09 Aligned_cols=51 Identities=16% Similarity=0.183 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 7541255687654222356-----69999999999975118502477776798762
Q gi|254780641|r 68 TPKNRRDKLSDILGFGEMT-----SLKTALRELQQSLQSRKPNMVSAAMDPLKKCV 118 (121)
Q Consensus 68 tpknrrdklsdilgfgemt-----slktalrelqqslqsrkpnmvsaamdplkkcv 118 (121)
.|.+.-+..+-|+.+-+|- .-+.|+|.|...++++.|+.+.-|..-|.-||
T Consensus 15 s~~l~~~Dw~~il~iCD~In~~~~~~k~a~raL~kRi~~~n~~v~l~AL~LLE~cv 70 (99)
T 1dvp_A 15 SHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIV 70 (99)
T ss_dssp CTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 86788868999999999995798569999999999976998899999999999999
No 6
>>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=21.48 E-value=58 Score=14.87 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1100013556756676887777741375412556876542223566999999999
Q gi|254780641|r 42 KTIGAQSLEFFYPVVAQKELQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQ 96 (121)
Q Consensus 42 ktigaqsleffypvvaqkelqsfihitpknrrdklsdilgfgemtslktalrelq 96 (121)
-.|+.+.+.+|.--.+-.+.-.|-.++-++.-..+..-|||-.+++....|+..-
T Consensus 35 P~i~g~~vdL~~Ly~~V~~~GG~~~V~~~~~W~~ia~~lg~~~~~~~~~~Lk~~Y 89 (122)
T 2eqy_A 35 PHVERKILDLFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHY 89 (122)
T ss_dssp CBSSSSBCCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHH
T ss_pred CCCCCEECCHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 8689985669999999998058254142161999999868997673899999999
No 7
>>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} (A:)
Probab=19.54 E-value=69 Score=14.46 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 542223566999999999997511
Q gi|254780641|r 79 ILGFGEMTSLKTALRELQQSLQSR 102 (121)
Q Consensus 79 ilgfgemtslktalrelqqslqsr 102 (121)
-.-|.|+.+|...|||||..+.-+
T Consensus 24 a~R~DEV~~Le~NLreLq~e~~~q 47 (51)
T 1yzm_A 24 AGRMDEVRTLQENLRQLQDEYDQQ 47 (51)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 334289999999999999999998
No 8
>>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} (B:)
Probab=17.61 E-value=79 Score=14.11 Aligned_cols=43 Identities=26% Similarity=0.417 Sum_probs=28.4
Q ss_pred HHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 56676887-7777413754125568765422235669999999999975118
Q gi|254780641|r 53 YPVVAQKE-LQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRK 103 (121)
Q Consensus 53 ypvvaqke-lqsfihitpknrrdklsdilgfgemtslktalrelqqslqsrk 103 (121)
-|.+-|-+ +.+||.-. ..-.-|.|+..|...|||||..+.-++
T Consensus 23 DPLlqQi~~ik~yI~QA--------k~a~r~dEV~~Le~NLreLq~e~~~qq 66 (69)
T 1z0k_B 23 DPLLQQIHNITSFIRQA--------KAAGRMDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp SHHHHHHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHH--------HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 80999999999999999--------981441899999999999999999987
No 9
>>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} (A:)
Probab=16.94 E-value=82 Score=14.02 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=20.1
Q ss_pred HHHHHHHHHCCCC-HHHHHHHHHHHHHCC
Q ss_conf 9999997511850-247777679876228
Q gi|254780641|r 93 RELQQSLQSRKPN-MVSAAMDPLKKCVGT 120 (121)
Q Consensus 93 relqqslqsrkpn-mvsaamdplkkcvgt 120 (121)
.|..+.+..-+|| .+..++.-||+||.|
T Consensus 19 eeY~~~lk~y~~d~d~le~~~~LK~cvDt 47 (70)
T 1utg_A 19 SSYETSLKEFEPDDTMKDAGMQMKKVLDS 47 (70)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf 99999987249988999999999998751
No 10
>>2qrd_G Protein C1556.08C; AMPK, ADP, ATP, ATP-binding, kinase, nucleotide-binding, serine/threonine-protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* (G:1-28,G:121-190,G:252-334)
Probab=15.95 E-value=62 Score=14.70 Aligned_cols=43 Identities=35% Similarity=0.345 Sum_probs=32.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 7688777774137541255687654222356699999999999751185
Q gi|254780641|r 56 VAQKELQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRKP 104 (121)
Q Consensus 56 vaqkelqsfihitpknrrdklsdilgfgemtslktalrelqqslqsrkp 104 (121)
-|-||.|.||.- ..--|.|....|.+|-.|.+-+-+|--+|-|
T Consensus 10 ~~~~~~~~~~~~------~~~~~~~~ihp~~pLyeac~~mi~s~arrIP 52 (181)
T 2qrd_G 10 GALKEIQAFIRS------RTSYDVLYVHPMHSLMDACLAMSKSRARRIP 52 (181)
T ss_dssp HHHHHHHHHHHH------SBGGGGSCBCTTSBHHHHHHHHHHSCCSEEE
T ss_pred HHHHHHHHHHCC------CCHHHHCEECCCCCHHHHHHHHHHHCCCCCE
T ss_conf 999999998721------9897816989999799999998874447641
Done!