Query gi|254780641|ref|YP_003065054.1| hypothetical protein CLIBASIA_02640 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 121
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 18:23:56 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780641.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ii8_A RAD50 ABC-ATPase; MRE11 73.8 1.5 6.4E-05 23.3 2.3 96 6-102 72-183 (195)
2 3kta_A Chromosome segregation 41.8 3.2 0.00013 21.4 -0.7 33 54-86 141-173 (182)
3 3g2s_A C-terminal fragment of 23.6 41 0.0017 14.9 4.3 50 69-118 22-76 (149)
4 2qkd_A Zinc finger protein ZPR 20.7 37 0.0016 15.1 1.8 20 23-42 150-169 (404)
5 3ldz_A STAM-1, signal transduc 16.6 59 0.0025 14.0 4.3 32 87-118 39-70 (140)
6 1z0k_B FYVE-finger-containing 16.4 59 0.0025 13.9 2.7 43 53-103 23-66 (69)
7 1x4q_A U4/U6 small nuclear rib 13.9 47 0.002 14.5 0.9 30 74-103 24-53 (92)
8 2cxy_A BAF250B subunit, HBAF25 13.3 72 0.003 13.4 1.8 53 43-95 45-97 (125)
9 1yzm_A FYVE-finger-containing 12.4 77 0.0032 13.3 2.6 22 80-101 25-46 (51)
10 1juq_A ADP-ribosylation factor 11.0 85 0.0036 13.0 4.3 31 88-118 48-78 (171)
No 1
>1ii8_A RAD50 ABC-ATPase; MRE11, DNA double-strand break repair, replication; 3.02A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=73.81 E-value=1.5 Score=23.33 Aligned_cols=96 Identities=19% Similarity=0.376 Sum_probs=51.8
Q ss_pred EEEE-ECCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH-------HH------HHHHHH--HHHHHHHHHHHHCCCC
Q ss_conf 2453-137421578877641788448762388888301100-------01------355675--6676887777741375
Q gi|254780641|r 6 KIEF-LDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIG-------AQ------SLEFFY--PVVAQKELQSFIHITP 69 (121)
Q Consensus 6 kief-ldgqkytiarqmhekgegsftliddipsgndfktig-------aq------sleffy--pvvaqkelqsfihitp 69 (121)
.++| .+|..|.|.|.........-..+.....+.+...+. .+ +.+.|- ..+.|.++..|+. .|
T Consensus 72 ~~~f~~~~~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~q~~~~~~l~-~~ 150 (195)
T 1ii8_A 72 DLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILE-SD 150 (195)
T ss_dssp EEEEEETTEEEEEEEEEECTTSCEEEEEEEEEETTEEECSSCSSHHHHHHHHHHHSCHHHHTTTTEECTTTTGGGSS-CS
T ss_pred EEEEEECCEEEEEEEEEECCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHCEEEEECCCHHHHHHH-CH
T ss_conf 99999699489999998627887517866542055302445566799999998521400100599973241999860-93
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 412556876542223566999999999997511
Q gi|254780641|r 70 KNRRDKLSDILGFGEMTSLKTALRELQQSLQSR 102 (121)
Q Consensus 70 knrrdklsdilgfgemtslktalrelqqslqsr 102 (121)
+.|++-+..++|......+...++++...+..+
T Consensus 151 ~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~ 183 (195)
T 1ii8_A 151 EAREKVVREVLNLDKFETAYKKLSELKKTINNR 183 (195)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999859589999999999999999999
No 2
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=41.82 E-value=3.2 Score=21.41 Aligned_cols=33 Identities=33% Similarity=0.589 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 667688777774137541255687654222356
Q gi|254780641|r 54 PVVAQKELQSFIHITPKNRRDKLSDILGFGEMT 86 (121)
Q Consensus 54 pvvaqkelqsfihitpknrrdklsdilgfgemt 86 (121)
-++.|.+..+|+..+|+.||.-|.+++|..+.-
T Consensus 141 ~~~~Q~~~~~~~~~~~~er~~~l~~~~g~~~y~ 173 (182)
T 3kta_A 141 NIVLQGDITKFIKMSPLERRLLIDDISGIAEYD 173 (182)
T ss_dssp TEECTTCTTHHHHSCHHHHHHHHHHHHTC----
T ss_pred EEEECCHHHHHHCCCHHHHHHHHHHHCCCHHHH
T ss_conf 999710368887099999999999980928999
No 3
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=23.57 E-value=41 Score=14.87 Aligned_cols=50 Identities=28% Similarity=0.335 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 541255687654222356-----69999999999975118502477776798762
Q gi|254780641|r 69 PKNRRDKLSDILGFGEMT-----SLKTALRELQQSLQSRKPNMVSAAMDPLKKCV 118 (121)
Q Consensus 69 pknrrdklsdilgfgemt-----slktalrelqqslqsrkpnmvsaamdplkkcv 118 (121)
|+|..+..+-|+.+-++- +-+.|+|-|..-|+++.||..-.|..-|.-||
T Consensus 22 ~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~kRl~~~~~~v~l~aL~LLe~~v 76 (149)
T 3g2s_A 22 PLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCM 76 (149)
T ss_dssp TTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 8888837999999999995799779999999999983998899999999999999
No 4
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=20.73 E-value=37 Score=15.12 Aligned_cols=20 Identities=45% Similarity=0.662 Sum_probs=16.9
Q ss_pred HCCCCCEEEEECCCCCCCHH
Q ss_conf 41788448762388888301
Q gi|254780641|r 23 EKGEGSFTLIDDIPSGNDFK 42 (121)
Q Consensus 23 ekgegsftliddipsgndfk 42 (121)
..|+-.||||=|=||||-|-
T Consensus 150 ~~g~~pfTlildDPsGnS~I 169 (404)
T 2qkd_A 150 KQMASPFTLVIDDPSGNSFV 169 (404)
T ss_dssp GGCSSCEEEEEEETTSCCEE
T ss_pred HCCCCCEEEEEECCCCCCCC
T ss_conf 65798769999889997101
No 5
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens}
Probab=16.60 E-value=59 Score=13.97 Aligned_cols=32 Identities=25% Similarity=0.506 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 69999999999975118502477776798762
Q gi|254780641|r 87 SLKTALRELQQSLQSRKPNMVSAAMDPLKKCV 118 (121)
Q Consensus 87 slktalrelqqslqsrkpnmvsaamdplkkcv 118 (121)
+-+.|.|-|...|+++.||...-|+.-|.-||
T Consensus 39 ~~k~a~ral~kRl~~~n~~v~l~aL~LLe~lv 70 (140)
T 3ldz_A 39 GPKDCLRSIMRRVNHKDPHVAMQALTLLGACV 70 (140)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 59999999999983998999999999999999
No 6
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=16.42 E-value=59 Score=13.94 Aligned_cols=43 Identities=26% Similarity=0.417 Sum_probs=28.1
Q ss_pred HHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 56676887-7777413754125568765422235669999999999975118
Q gi|254780641|r 53 YPVVAQKE-LQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRK 103 (121)
Q Consensus 53 ypvvaqke-lqsfihitpknrrdklsdilgfgemtslktalrelqqslqsrk 103 (121)
-|.+-|-+ +.+||.-. ..-.-|.|+..|...|||||..+.-++
T Consensus 23 dPLlqQi~~Ik~yI~QA--------k~a~r~dEV~~Le~NLreLq~e~~~qq 66 (69)
T 1z0k_B 23 DPLLQQIHNITSFIRQA--------KAAGRMDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp SHHHHHHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHH--------HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 81999999999999999--------994340899999999999999999987
No 7
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=13.93 E-value=47 Score=14.50 Aligned_cols=30 Identities=27% Similarity=0.496 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 568765422235669999999999975118
Q gi|254780641|r 74 DKLSDILGFGEMTSLKTALRELQQSLQSRK 103 (121)
Q Consensus 74 dklsdilgfgemtslktalrelqqslqsrk 103 (121)
...+..|||.|-+-+.+|+.-+.+.+.-||
T Consensus 24 ktV~KvLGfsE~sVVtaAl~Ci~~g~DkrK 53 (92)
T 1x4q_A 24 KTVKRVLGFSEPTVVTAALNCVGKGMDKKK 53 (92)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHCCCHHHH
T ss_conf 999999378852999999999870521667
No 8
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=13.27 E-value=72 Score=13.43 Aligned_cols=53 Identities=21% Similarity=0.414 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10001355675667688777774137541255687654222356699999999
Q gi|254780641|r 43 TIGAQSLEFFYPVVAQKELQSFIHITPKNRRDKLSDILGFGEMTSLKTALREL 95 (121)
Q Consensus 43 tigaqsleffypvvaqkelqsfihitpknrrdklsdilgfgemtslktalrel 95 (121)
.|+.+.+.+|.--.+-.++-.|-.++-++.-..+...||+..+++...+|+..
T Consensus 45 ~i~gr~vDL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~Lk~~ 97 (125)
T 2cxy_A 45 AVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQ 97 (125)
T ss_dssp EETTEECCHHHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHH
T ss_pred CCCCEEECHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 08995513999999999837857746616299999985999889789999999
No 9
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=12.39 E-value=77 Score=13.27 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4222356699999999999751
Q gi|254780641|r 80 LGFGEMTSLKTALRELQQSLQS 101 (121)
Q Consensus 80 lgfgemtslktalrelqqslqs 101 (121)
--|.|..+|..-|||||..+.-
T Consensus 25 ~R~dEV~~Le~NLreLq~e~~~ 46 (51)
T 1yzm_A 25 GRMDEVRTLQENLRQLQDEYDQ 46 (51)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 3428999999999999999999
No 10
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=11.02 E-value=85 Score=13.01 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9999999999975118502477776798762
Q gi|254780641|r 88 LKTALRELQQSLQSRKPNMVSAAMDPLKKCV 118 (121)
Q Consensus 88 lktalrelqqslqsrkpnmvsaamdplkkcv 118 (121)
-+.|+|-|..-|+++.||.+..|..-|.-||
T Consensus 48 ~k~avraL~krl~~~n~~v~l~aL~Lld~~v 78 (171)
T 1juq_A 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACM 78 (171)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999999976998999999999999999
Done!