Query         gi|254780641|ref|YP_003065054.1| hypothetical protein CLIBASIA_02640 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 121
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 08:32:55 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780641.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1yzma1 a.2.19.1 (A:456-501) F  15.8      35  0.0026   13.9   2.1   23   80-102    22-44  (46)
  2 d1eaka1 a.20.1.2 (A:32-107) Ge  15.2      37  0.0027   13.8   3.5   36   56-102    18-53  (76)
  3 d1ccda_ a.101.1.1 (A:) Clara c  14.4      38  0.0028   13.6   2.6   28   93-120    21-49  (77)
  4 d1utga_ a.101.1.1 (A:) Uterogl  13.4      41   0.003   13.4   3.4   28   93-120    19-47  (70)
  5 d1juqa_ a.118.9.2 (A:) ADP-rib  12.0      45  0.0033   13.2   4.3   24   89-112    38-61  (151)
  6 d1pg5b1 d.58.2.1 (B:11-104) As  11.4      30  0.0022   14.2   0.5   15   30-44      9-23  (94)
  7 d2fzcb1 d.58.2.1 (B:2-100) Asp  11.4      39  0.0028   13.6   1.1   18   28-45     13-30  (99)
  8 d1ryua_ a.4.3.1 (A:) SWI-SNF c  11.0      49  0.0036   13.0   2.9   55   43-97     44-98  (120)
  9 d1ujka_ a.118.9.2 (A:) ADP-rib   9.8      54  0.0039   12.8   4.1   32   87-118    42-73  (145)
 10 d1dvpa1 a.118.9.2 (A:1-145) Hr   8.8      59  0.0043   12.5   4.3   50   69-118    16-70  (145)

No 1  
>d1yzma1 a.2.19.1 (A:456-501) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.84  E-value=35  Score=13.85  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             42223566999999999997511
Q gi|254780641|r   80 LGFGEMTSLKTALRELQQSLQSR  102 (121)
Q Consensus        80 lgfgemtslktalrelqqslqsr  102 (121)
                      --|.|+.+|..-|||||..+.-+
T Consensus        22 ~R~dEV~~Le~NLreLq~e~~~q   44 (46)
T d1yzma1          22 GRMDEVRTLQENLRQLQDEYDQQ   44 (46)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             45189999999999999999863


No 2  
>d1eaka1 a.20.1.2 (A:32-107) Gelatinase A (MMP-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.24  E-value=37  Score=13.76  Aligned_cols=36  Identities=19%  Similarity=0.275  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             76887777741375412556876542223566999999999997511
Q gi|254780641|r   56 VAQKELQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSR  102 (121)
Q Consensus        56 vaqkelqsfihitpknrrdklsdilgfgemtslktalrelqqslqsr  102 (121)
                      .|++-|+.|-.+...+           +.+.+++.|++++|+...-.
T Consensus        18 ~A~~YL~~fgyl~~~~-----------~~~~~l~~ai~~~Q~f~~L~   53 (76)
T d1eaka1          18 LAVQYLNTFYGCPKES-----------CNLFVLKDTLKKMQKFFGLP   53 (76)
T ss_dssp             HHHHHHHHHTCCCSSC-----------CCHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHCCCCCCC-----------CCCHHHHHHHHHHHHHCCCC
T ss_conf             9999999957998677-----------75079999999999981998


No 3  
>d1ccda_ a.101.1.1 (A:) Clara cell 17kDa protein {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=14.45  E-value=38  Score=13.63  Aligned_cols=28  Identities=25%  Similarity=0.310  Sum_probs=18.0

Q ss_pred             HHHHHHHHHCCCC-HHHHHHHHHHHHHCC
Q ss_conf             9999997511850-247777679876228
Q gi|254780641|r   93 RELQQSLQSRKPN-MVSAAMDPLKKCVGT  120 (121)
Q Consensus        93 relqqslqsrkpn-mvsaamdplkkcvgt  120 (121)
                      .|..+++..-+|| .+-+++.-||+||.|
T Consensus        21 eeY~~~vk~y~~d~~~lea~~~LK~cVDt   49 (77)
T d1ccda_          21 SNYEAALKPFNPASDLQNAGTQLKRLVDT   49 (77)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf             99999997259989999999999998860


No 4  
>d1utga_ a.101.1.1 (A:) Uteroglobin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=13.35  E-value=41  Score=13.45  Aligned_cols=28  Identities=21%  Similarity=0.317  Sum_probs=19.1

Q ss_pred             HHHHHHHHHCCCC-HHHHHHHHHHHHHCC
Q ss_conf             9999997511850-247777679876228
Q gi|254780641|r   93 RELQQSLQSRKPN-MVSAAMDPLKKCVGT  120 (121)
Q Consensus        93 relqqslqsrkpn-mvsaamdplkkcvgt  120 (121)
                      .|..+++..-+|| .+.++..-||+||.|
T Consensus        19 eeY~~~vk~y~~~~~~le~~~~lK~cvDt   47 (70)
T d1utga_          19 SSYETSLKEFEPDDTMKDAGMQMKKVLDS   47 (70)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf             99999997349989999999999998850


No 5  
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.05  E-value=45  Score=13.21  Aligned_cols=24  Identities=25%  Similarity=0.242  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             999999999975118502477776
Q gi|254780641|r   89 KTALRELQQSLQSRKPNMVSAAMD  112 (121)
Q Consensus        89 ktalrelqqslqsrkpnmvsaamd  112 (121)
                      +.|+|-+..-++++.||.+--|+.
T Consensus        38 k~a~rai~krl~~~~~~~~l~aL~   61 (151)
T d1juqa_          38 QIAVRLLAHKIQSPQEWEALQALT   61 (151)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             999999999984998999999999


No 6  
>d1pg5b1 d.58.2.1 (B:11-104) Aspartate carbamoyltransferase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=11.39  E-value=30  Score=14.25  Aligned_cols=15  Identities=47%  Similarity=0.935  Sum_probs=9.5

Q ss_pred             EEEECCCCCCCHHHH
Q ss_conf             876238888830110
Q gi|254780641|r   30 TLIDDIPSGNDFKTI   44 (121)
Q Consensus        30 tliddipsgndfkti   44 (121)
                      |.||.||+|.-++-.
T Consensus         9 tVIDHIpag~~lkVl   23 (94)
T d1pg5b1           9 TVIDHIPAGRAFAVL   23 (94)
T ss_dssp             EEEEEEETTCHHHHH
T ss_pred             CEEEEECCCCHHHHH
T ss_conf             488620698588999


No 7  
>d2fzcb1 d.58.2.1 (B:2-100) Aspartate carbamoyltransferase {Escherichia coli [TaxId: 562]}
Probab=11.36  E-value=39  Score=13.60  Aligned_cols=18  Identities=39%  Similarity=0.540  Sum_probs=11.5

Q ss_pred             CEEEEECCCCCCCHHHHH
Q ss_conf             448762388888301100
Q gi|254780641|r   28 SFTLIDDIPSGNDFKTIG   45 (121)
Q Consensus        28 sftliddipsgndfktig   45 (121)
                      .=|.||.||+|.-++-..
T Consensus        13 nGtVIDHIpaG~~lkVl~   30 (99)
T d2fzcb1          13 RGTVIDHIPAQIGFKLLS   30 (99)
T ss_dssp             SEEEEEEECTTTHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHH
T ss_conf             953886217985779999


No 8  
>d1ryua_ a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.00  E-value=49  Score=13.00  Aligned_cols=55  Identities=18%  Similarity=0.369  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1000135567566768877777413754125568765422235669999999999
Q gi|254780641|r   43 TIGAQSLEFFYPVVAQKELQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQ   97 (121)
Q Consensus        43 tigaqsleffypvvaqkelqsfihitpknrrdklsdilgfgemtslktalrelqq   97 (121)
                      .|+...+.+|.--.+-.....|-.++-.++-..+.+-||+..+++...+||..-.
T Consensus        44 ~i~gr~vDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~l~~~~~~~~~~~Lk~~Y~   98 (120)
T d1ryua_          44 AVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVGTSSSAASSLKKQYI   98 (120)
T ss_dssp             CCSSSSCCHHHHHHHHHHHTCTTGGGTSSHHHHHHHHTTSCCSSHHHHHHHHHHH
T ss_pred             EECCEECCHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             1898445699999999981588760640509999998499987879999999999


No 9  
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.85  E-value=54  Score=12.76  Aligned_cols=32  Identities=25%  Similarity=0.277  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             69999999999975118502477776798762
Q gi|254780641|r   87 SLKTALRELQQSLQSRKPNMVSAAMDPLKKCV  118 (121)
Q Consensus        87 slktalrelqqslqsrkpnmvsaamdplkkcv  118 (121)
                      .-+.|+|-+...++++.||..--|+.-|.-||
T Consensus        42 ~~k~a~r~l~krl~~~~~~~~l~aL~LLe~~v   73 (145)
T d1ujka_          42 GPPLATRLLAHKIQSPQEWEAIQALTVLETCM   73 (145)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             69999999999984998899999999999999


No 10 
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=8.83  E-value=59  Score=12.52  Aligned_cols=50  Identities=16%  Similarity=0.173  Sum_probs=0.0

Q ss_pred             CCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             5412556876542223566-----9999999999975118502477776798762
Q gi|254780641|r   69 PKNRRDKLSDILGFGEMTS-----LKTALRELQQSLQSRKPNMVSAAMDPLKKCV  118 (121)
Q Consensus        69 pknrrdklsdilgfgemts-----lktalrelqqslqsrkpnmvsaamdplkkcv  118 (121)
                      +.|..+..+-|+-+-++-.     -+.|+|-+...++++.|+..--|+.-|.-||
T Consensus        16 ~~~~~~dw~~il~icD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLd~~v   70 (145)
T d1dvpa1          16 HLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIV   70 (145)
T ss_dssp             TTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             6789889999999999995798559999999999974998899999999999999


Done!