Query gi|254780641|ref|YP_003065054.1| hypothetical protein CLIBASIA_02640 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 121 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 08:32:55 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780641.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1yzma1 a.2.19.1 (A:456-501) F 15.8 35 0.0026 13.9 2.1 23 80-102 22-44 (46) 2 d1eaka1 a.20.1.2 (A:32-107) Ge 15.2 37 0.0027 13.8 3.5 36 56-102 18-53 (76) 3 d1ccda_ a.101.1.1 (A:) Clara c 14.4 38 0.0028 13.6 2.6 28 93-120 21-49 (77) 4 d1utga_ a.101.1.1 (A:) Uterogl 13.4 41 0.003 13.4 3.4 28 93-120 19-47 (70) 5 d1juqa_ a.118.9.2 (A:) ADP-rib 12.0 45 0.0033 13.2 4.3 24 89-112 38-61 (151) 6 d1pg5b1 d.58.2.1 (B:11-104) As 11.4 30 0.0022 14.2 0.5 15 30-44 9-23 (94) 7 d2fzcb1 d.58.2.1 (B:2-100) Asp 11.4 39 0.0028 13.6 1.1 18 28-45 13-30 (99) 8 d1ryua_ a.4.3.1 (A:) SWI-SNF c 11.0 49 0.0036 13.0 2.9 55 43-97 44-98 (120) 9 d1ujka_ a.118.9.2 (A:) ADP-rib 9.8 54 0.0039 12.8 4.1 32 87-118 42-73 (145) 10 d1dvpa1 a.118.9.2 (A:1-145) Hr 8.8 59 0.0043 12.5 4.3 50 69-118 16-70 (145) No 1 >d1yzma1 a.2.19.1 (A:456-501) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]} Probab=15.84 E-value=35 Score=13.85 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=18.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 42223566999999999997511 Q gi|254780641|r 80 LGFGEMTSLKTALRELQQSLQSR 102 (121) Q Consensus 80 lgfgemtslktalrelqqslqsr 102 (121) --|.|+.+|..-|||||..+.-+ T Consensus 22 ~R~dEV~~Le~NLreLq~e~~~q 44 (46) T d1yzma1 22 GRMDEVRTLQENLRQLQDEYDQQ 44 (46) T ss_dssp TCHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHH T ss_conf 45189999999999999999863 No 2 >d1eaka1 a.20.1.2 (A:32-107) Gelatinase A (MMP-2) {Human (Homo sapiens) [TaxId: 9606]} Probab=15.24 E-value=37 Score=13.76 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=25.1 Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 76887777741375412556876542223566999999999997511 Q gi|254780641|r 56 VAQKELQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSR 102 (121) Q Consensus 56 vaqkelqsfihitpknrrdklsdilgfgemtslktalrelqqslqsr 102 (121) .|++-|+.|-.+...+ +.+.+++.|++++|+...-. T Consensus 18 ~A~~YL~~fgyl~~~~-----------~~~~~l~~ai~~~Q~f~~L~ 53 (76) T d1eaka1 18 LAVQYLNTFYGCPKES-----------CNLFVLKDTLKKMQKFFGLP 53 (76) T ss_dssp HHHHHHHHHTCCCSSC-----------CCHHHHHHHHHHHHHHSSCC T ss_pred HHHHHHHHHCCCCCCC-----------CCCHHHHHHHHHHHHHCCCC T ss_conf 9999999957998677-----------75079999999999981998 No 3 >d1ccda_ a.101.1.1 (A:) Clara cell 17kDa protein {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=14.45 E-value=38 Score=13.63 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=18.0 Q ss_pred HHHHHHHHHCCCC-HHHHHHHHHHHHHCC Q ss_conf 9999997511850-247777679876228 Q gi|254780641|r 93 RELQQSLQSRKPN-MVSAAMDPLKKCVGT 120 (121) Q Consensus 93 relqqslqsrkpn-mvsaamdplkkcvgt 120 (121) .|..+++..-+|| .+-+++.-||+||.| T Consensus 21 eeY~~~vk~y~~d~~~lea~~~LK~cVDt 49 (77) T d1ccda_ 21 SNYEAALKPFNPASDLQNAGTQLKRLVDT 49 (77) T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHC T ss_conf 99999997259989999999999998860 No 4 >d1utga_ a.101.1.1 (A:) Uteroglobin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Probab=13.35 E-value=41 Score=13.45 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=19.1 Q ss_pred HHHHHHHHHCCCC-HHHHHHHHHHHHHCC Q ss_conf 9999997511850-247777679876228 Q gi|254780641|r 93 RELQQSLQSRKPN-MVSAAMDPLKKCVGT 120 (121) Q Consensus 93 relqqslqsrkpn-mvsaamdplkkcvgt 120 (121) .|..+++..-+|| .+.++..-||+||.| T Consensus 19 eeY~~~vk~y~~~~~~le~~~~lK~cvDt 47 (70) T d1utga_ 19 SSYETSLKEFEPDDTMKDAGMQMKKVLDS 47 (70) T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHC T ss_conf 99999997349989999999999998850 No 5 >d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Probab=12.05 E-value=45 Score=13.21 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=8.3 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 999999999975118502477776 Q gi|254780641|r 89 KTALRELQQSLQSRKPNMVSAAMD 112 (121) Q Consensus 89 ktalrelqqslqsrkpnmvsaamd 112 (121) +.|+|-+..-++++.||.+--|+. T Consensus 38 k~a~rai~krl~~~~~~~~l~aL~ 61 (151) T d1juqa_ 38 QIAVRLLAHKIQSPQEWEALQALT 61 (151) T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 999999999984998999999999 No 6 >d1pg5b1 d.58.2.1 (B:11-104) Aspartate carbamoyltransferase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Probab=11.39 E-value=30 Score=14.25 Aligned_cols=15 Identities=47% Similarity=0.935 Sum_probs=9.5 Q ss_pred EEEECCCCCCCHHHH Q ss_conf 876238888830110 Q gi|254780641|r 30 TLIDDIPSGNDFKTI 44 (121) Q Consensus 30 tliddipsgndfkti 44 (121) |.||.||+|.-++-. T Consensus 9 tVIDHIpag~~lkVl 23 (94) T d1pg5b1 9 TVIDHIPAGRAFAVL 23 (94) T ss_dssp EEEEEEETTCHHHHH T ss_pred CEEEEECCCCHHHHH T ss_conf 488620698588999 No 7 >d2fzcb1 d.58.2.1 (B:2-100) Aspartate carbamoyltransferase {Escherichia coli [TaxId: 562]} Probab=11.36 E-value=39 Score=13.60 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=11.5 Q ss_pred CEEEEECCCCCCCHHHHH Q ss_conf 448762388888301100 Q gi|254780641|r 28 SFTLIDDIPSGNDFKTIG 45 (121) Q Consensus 28 sftliddipsgndfktig 45 (121) .=|.||.||+|.-++-.. T Consensus 13 nGtVIDHIpaG~~lkVl~ 30 (99) T d2fzcb1 13 RGTVIDHIPAQIGFKLLS 30 (99) T ss_dssp SEEEEEEECTTTHHHHHH T ss_pred CCCEEEEECCCCHHHHHH T ss_conf 953886217985779999 No 8 >d1ryua_ a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 {Human (Homo sapiens) [TaxId: 9606]} Probab=11.00 E-value=49 Score=13.00 Aligned_cols=55 Identities=18% Similarity=0.369 Sum_probs=40.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1000135567566768877777413754125568765422235669999999999 Q gi|254780641|r 43 TIGAQSLEFFYPVVAQKELQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQ 97 (121) Q Consensus 43 tigaqsleffypvvaqkelqsfihitpknrrdklsdilgfgemtslktalrelqq 97 (121) .|+...+.+|.--.+-.....|-.++-.++-..+.+-||+..+++...+||..-. T Consensus 44 ~i~gr~vDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~l~~~~~~~~~~~Lk~~Y~ 98 (120) T d1ryua_ 44 AVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVGTSSSAASSLKKQYI 98 (120) T ss_dssp CCSSSSCCHHHHHHHHHHHTCTTGGGTSSHHHHHHHHTTSCCSSHHHHHHHHHHH T ss_pred EECCEECCHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH T ss_conf 1898445699999999981588760640509999998499987879999999999 No 9 >d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Probab=9.85 E-value=54 Score=12.76 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=21.0 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 69999999999975118502477776798762 Q gi|254780641|r 87 SLKTALRELQQSLQSRKPNMVSAAMDPLKKCV 118 (121) Q Consensus 87 slktalrelqqslqsrkpnmvsaamdplkkcv 118 (121) .-+.|+|-+...++++.||..--|+.-|.-|| T Consensus 42 ~~k~a~r~l~krl~~~~~~~~l~aL~LLe~~v 73 (145) T d1ujka_ 42 GPPLATRLLAHKIQSPQEWEAIQALTVLETCM 73 (145) T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 69999999999984998899999999999999 No 10 >d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=8.83 E-value=59 Score=12.52 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=0.0 Q ss_pred CCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 5412556876542223566-----9999999999975118502477776798762 Q gi|254780641|r 69 PKNRRDKLSDILGFGEMTS-----LKTALRELQQSLQSRKPNMVSAAMDPLKKCV 118 (121) Q Consensus 69 pknrrdklsdilgfgemts-----lktalrelqqslqsrkpnmvsaamdplkkcv 118 (121) +.|..+..+-|+-+-++-. -+.|+|-+...++++.|+..--|+.-|.-|| T Consensus 16 ~~~~~~dw~~il~icD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLd~~v 70 (145) T d1dvpa1 16 HLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIV 70 (145) T ss_dssp TTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 6789889999999999995798559999999999974998899999999999999 Done!