BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780641|ref|YP_003065054.1| hypothetical protein
CLIBASIA_02640 [Candidatus Liberibacter asiaticus str. psy62]
         (121 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780641|ref|YP_003065054.1| hypothetical protein CLIBASIA_02640 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040318|gb|ACT57114.1| hypothetical protein CLIBASIA_02640 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 121

 Score =  252 bits (643), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MQISAKIEFLDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQSLEFFYPVVAQKE 60
           MQISAKIEFLDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQSLEFFYPVVAQKE
Sbjct: 1   MQISAKIEFLDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQSLEFFYPVVAQKE 60

Query: 61  LQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRKPNMVSAAMDPLKKCVGT 120
           LQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRKPNMVSAAMDPLKKCVGT
Sbjct: 61  LQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRKPNMVSAAMDPLKKCVGT 120

Query: 121 R 121
           R
Sbjct: 121 R 121


>gi|189485480|ref|YP_001956421.1| hypothetical protein TGRD_477 [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287439|dbj|BAG13960.1| conserved hypothetical protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 807

 Score = 38.9 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 55/103 (53%), Gaps = 6/103 (5%)

Query: 3   ISAKIEFLDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQSLEFFYPVVAQKELQ 62
           I++++   D Q + I++++  KG     L+ D+ + ++   + ++       ++    L+
Sbjct: 77  INSEVYIKDNQNFNISKKLFYKGS---KLVSDLSNTSETYMLASEKENL---LIRYYLLR 130

Query: 63  SFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRKPN 105
           +F+  T  ++   LSDI+GF E+T  K  L++   S++++  N
Sbjct: 131 NFVSQTKSDKLKLLSDIIGFSEVTKTKEILKKTFNSVKNKIKN 173


>gi|15606061|ref|NP_213438.1| chromosome assembly protein [Aquifex aeolicus VF5]
 gi|2983243|gb|AAC06839.1| chromosome assembly protein homolog [Aquifex aeolicus VF5]
          Length = 1156

 Score = 38.1 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 10  LDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQS--LEFFYPVVAQKELQSFIHI 67
           ++ ++  I+R++ + G   F +   +    D K   A++   E  Y VV Q ++  F+ +
Sbjct: 95  VEDEEVVISRKVSKDGRSIFKINGQVVRERDLKDFLAKAGIYETAYNVVYQGDIVKFLKM 154

Query: 68  TPKNRRDKLSDILGFGEMTSLK-TALRELQQ 97
           TP  RR  + +I G GE    K  AL EL +
Sbjct: 155 TPVERRKIIEEISGIGEYERKKEKALEELAE 185


>gi|225848784|ref|YP_002728948.1| chromosome segregation protein SMC [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644251|gb|ACN99301.1| chromosome segregation protein SMC [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 1171

 Score = 37.0 bits (84), Expect = 0.82,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 53  YPVVAQKELQSFIHITPKNRRDKLSDILGFGEMTSLK-TALRELQQS 98
           Y +V Q ++  F+ +TP  RRD +SDI G  +    K  A+++L QS
Sbjct: 139 YNIVTQGDIYKFVKMTPSERRDLISDIAGITQYEERKQKAIQDLNQS 185


>gi|170726418|ref|YP_001760444.1| putative PAS/PAC sensor protein [Shewanella woodyi ATCC 51908]
 gi|169811765|gb|ACA86349.1| putative PAS/PAC sensor protein [Shewanella woodyi ATCC 51908]
          Length = 872

 Score = 37.0 bits (84), Expect = 0.83,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 53  YPVVAQKELQSFIHITPKNRRDKLSDILGFGEMTSLKTALR----ELQQSLQSRKPNMVS 108
           +P  +Q++L S +  TP N+RDKL+ ++      +L TA      +L  + QS + ++VS
Sbjct: 298 HPAFSQEQLSSLLQSTPVNQRDKLAALINLNASKTLNTAELITSFKLSPNEQSNQASLVS 357

Query: 109 AAMDP 113
             + P
Sbjct: 358 IFLMP 362


>gi|225851450|ref|YP_002731684.1| chromosome segregation protein SMC [Persephonella marina EX-H1]
 gi|225645745|gb|ACO03931.1| chromosome segregation protein SMC [Persephonella marina EX-H1]
          Length = 1162

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 16/105 (15%)

Query: 10  LDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQSLEFF-------YPVVAQKELQ 62
           L+ ++ +I R++   G+ ++ +     +G   K    + L  +       Y +V Q ++ 
Sbjct: 94  LNDEEVSIYRKVEHNGKSTYRI-----NGRPAKQYEVEELLSYAGIPKQGYNIVTQGDIF 148

Query: 63  SFIHITPKNRRDKLSDILGFGEMTSLKTA----LRELQQSLQSRK 103
            F+ +TP  RRD LS+I G  E    K      L E ++ +QS K
Sbjct: 149 RFVKMTPSERRDLLSEIAGITEYEEKKEKALKDLTETEEKIQSAK 193


>gi|226226181|ref|YP_002760287.1| exonuclease [Gemmatimonas aurantiaca T-27]
 gi|226089372|dbj|BAH37817.1| exonuclease [Gemmatimonas aurantiaca T-27]
          Length = 800

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 15/115 (13%)

Query: 10  LDGQKYTIARQMHEKGEGSFTLIDD--------IPSGNDF--KTIGAQSLEFFYP-VVAQ 58
           L G +Y +AR +     G+   +DD        +   ++F  + +G    EFF+     Q
Sbjct: 80  LAGHRYRVARSL----SGAECFLDDAEQPIASTVTGVSEFMQRRLGMTRSEFFHTYFTGQ 135

Query: 59  KELQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRKPNMVSAAMDP 113
           KEL     + P  R   LS +LG+  ++  +  +RE +++L +    +     DP
Sbjct: 136 KELDVMSALGPAERARFLSRVLGYDRISGAQEFVRERRRTLAAEINGLRQGMSDP 190


>gi|124249272|ref|NP_001074375.1| NEDD8 ultimate buster 1 [Bos taurus]
 gi|115545455|gb|AAI22682.1| Negative regulator of ubiquitin-like proteins 1 [Bos taurus]
 gi|296488172|gb|DAA30285.1| NEDD8 ultimate buster-1 [Bos taurus]
          Length = 614

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 5/53 (9%)

Query: 37  SGND-FKTIGAQSLEFFYPVVAQKE----LQSFIHITPKNRRDKLSDILGFGE 84
           +GN+ +KT G  ++E F P   +K+    L++ +HIT +  R K+++  GF E
Sbjct: 72  TGNEHYKTTGIATIEVFLPARLKKDRKNLLETHLHITGRELRSKIAETFGFQE 124


>gi|161528753|ref|YP_001582579.1| SMC domain-containing protein [Nitrosopumilus maritimus SCM1]
 gi|160340054|gb|ABX13141.1| SMC domain protein [Nitrosopumilus maritimus SCM1]
          Length = 693

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 18/101 (17%)

Query: 6   KIEFLDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQSLEFFYPVVAQKELQSFI 65
           KIE   G++      M ++ E +  L        DF+ +   S      +V Q EL + I
Sbjct: 103 KIEIAAGERKQFGESMTQEVEKAIGL--------DFEKLKVAS------IVQQGELNAII 148

Query: 66  HITPKNRRDKLSDILGFGEM----TSLKTALRELQQSLQSR 102
           +  PK  ++ L+ I+G  ++     S+KT  +E ++S++SR
Sbjct: 149 NAKPKEFKELLNAIIGIDKLDVASESMKTVNKEFRESIRSR 189


>gi|119578263|gb|EAW57859.1| hCG2040761 [Homo sapiens]
          Length = 119

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 7   IEFLDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFK----TIGAQSLEFFYPVVAQKELQ 62
           ++F +G+K T  R++H      F L  DIP+    K    +   Q+  FF+P++    L+
Sbjct: 45  LQFFNGRKNTFKRRLHHTRNSLFRLATDIPNKPTLKIKLSSRNTQTFFFFFPIINLPTLK 104

Query: 63  SFI 65
           + +
Sbjct: 105 AVL 107


>gi|163784336|ref|ZP_02179239.1| hypothetical protein HG1285_04758 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880397|gb|EDP73998.1| hypothetical protein HG1285_04758 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 666

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 53  YPVVAQKELQSFIHITPKNRRDKLSDILGFGEMTSLK-TALRELQQS 98
           Y +V Q ++  FI +TP  RRD +S+I G  +    K  AL++L+++
Sbjct: 139 YNIVTQGDIFKFIKMTPSERRDLISEIAGITDYEERKEKALKDLEET 185


>gi|126341060|ref|XP_001364145.1| PREDICTED: hypothetical protein isoform 1 [Monodelphis domestica]
          Length = 614

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 5/53 (9%)

Query: 37  SGND-FKTIGAQSLEFFYPVVAQKE----LQSFIHITPKNRRDKLSDILGFGE 84
           +GN+ FKT G  ++E F P   +K+    L++ +HIT K  R ++++  GF E
Sbjct: 72  TGNENFKTTGVATIEVFLPPRLRKDKKSLLETKLHITGKELRSQIAESFGFQE 124


>gi|194210158|ref|XP_001504715.2| PREDICTED: negative regulator of ubiquitin-like proteins 1 [Equus
           caballus]
          Length = 600

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 6/68 (8%)

Query: 37  SGND-FKTIGAQSLEFFYPVVAQKE----LQSFIHITPKNRRDKLSDILGFGEMTSLKTA 91
           +GN+ +KT G  ++E F P   +K+    L++ +HIT +  R K+++  GF E + +K  
Sbjct: 72  TGNEHYKTTGIATIEVFLPPRVRKDRKNRLETRLHITGRELRSKIAETFGFQE-SYIKIV 130

Query: 92  LRELQQSL 99
           + + Q  L
Sbjct: 131 INKKQLQL 138


>gi|159163425|pdb|1WJU|A Chain A, Solution Structure Of N-Terminal Ubiquitin-Like Domain
          Of Human Nedd8 Ultimate Buster-1
          Length = 100

 Score = 35.0 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 4/52 (7%)

Query: 37 SGNDFKTIGAQSLEFFYPVVAQKE----LQSFIHITPKNRRDKLSDILGFGE 84
          SG++++T G  ++E F P   +K+    L++ +HIT +  R K+++  G  E
Sbjct: 6  SGDNYRTTGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQE 57


>gi|154249899|ref|YP_001410724.1| chromosome segregation protein SMC [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153835|gb|ABS61067.1| chromosome segregation protein SMC [Fervidobacterium nodosum
           Rt17-B1]
          Length = 1164

 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 13  QKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQSL--EFFYPVVAQKELQSFIHITPK 70
           ++ +IAR++   G G + L  DI    D +    Q    +  Y ++ Q ++   +  TP+
Sbjct: 89  ERVSIARELSRDGTGKYLLNGDIARLKDIRDFLMQHGYGKNPYSIIGQGQIDRIVSSTPE 148

Query: 71  NRRDKLSDILGFG 83
           N R  + +I G G
Sbjct: 149 NLRTMIEEIAGIG 161


>gi|301759375|ref|XP_002915529.1| PREDICTED: NEDD8 ultimate buster 1-like isoform 2 [Ailuropoda
           melanoleuca]
          Length = 600

 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 5/53 (9%)

Query: 37  SGND-FKTIGAQSLEFFYPVVAQKE----LQSFIHITPKNRRDKLSDILGFGE 84
           +GN+ +KT G  ++E F P   +K+    L++ +HIT +  R K+++  GF E
Sbjct: 72  TGNENYKTTGIATIEVFLPPRLRKDRKNLLETRLHITGRELRSKIAETFGFQE 124


>gi|301759373|ref|XP_002915528.1| PREDICTED: NEDD8 ultimate buster 1-like isoform 1 [Ailuropoda
           melanoleuca]
 gi|281339849|gb|EFB15433.1| hypothetical protein PANDA_003537 [Ailuropoda melanoleuca]
          Length = 614

 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 5/53 (9%)

Query: 37  SGND-FKTIGAQSLEFFYPVVAQKE----LQSFIHITPKNRRDKLSDILGFGE 84
           +GN+ +KT G  ++E F P   +K+    L++ +HIT +  R K+++  GF E
Sbjct: 72  TGNENYKTTGIATIEVFLPPRLRKDRKNLLETRLHITGRELRSKIAETFGFQE 124


>gi|73979001|ref|XP_532765.2| PREDICTED: similar to NEDD8 ultimate buster-1 (NY-REN-18 antigen)
           [Canis familiaris]
          Length = 621

 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 5/53 (9%)

Query: 37  SGND-FKTIGAQSLEFFYPVVAQKE----LQSFIHITPKNRRDKLSDILGFGE 84
           +GN+ +KT G  ++E F P   +K+    L++ +HIT +  R K+++  GF E
Sbjct: 72  TGNENYKTTGIATIEVFLPPRLRKDRKNLLETRLHITGRELRSKIAETFGFQE 124


>gi|297821489|ref|XP_002878627.1| hypothetical protein ARALYDRAFT_343817 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297324466|gb|EFH54886.1| hypothetical protein ARALYDRAFT_343817 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 920

 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 12  GQKYTIARQMHEKGEGSFTLIDD----IPSGNDFKTIGAQSL---EFFYPVVAQKELQSF 64
           G+K     Q    GE  F LI      IP   + K +G  SL   EF +PV+ Q  ++ +
Sbjct: 450 GEKQVATFQCEPTGELVFKLISSSPSKIPVSREPKNLGFASLSLKEFLFPVITQLSVEKW 509

Query: 65  IHITP 69
           + +TP
Sbjct: 510 LELTP 514


>gi|319789740|ref|YP_004151373.1| SMC domain protein [Thermovibrio ammonificans HB-1]
 gi|317114242|gb|ADU96732.1| SMC domain protein [Thermovibrio ammonificans HB-1]
          Length = 894

 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 15/109 (13%)

Query: 6   KIEFL-DGQKYTIARQMHEKGEGSFTLIDD---IPSGNDFKTIGAQSLE--------FFY 53
           K+EFL  G+ YT+ R++H +      L +D   +  G   K + A  LE        F  
Sbjct: 72  KVEFLYKGKLYTLERRIHVRRSSEAELYEDGRLVARG--VKQVKAYLLENLGLDGNLFKN 129

Query: 54  PV-VAQKELQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQS 101
            V V Q E+      TPK RR  L+ +LG  E+  L   ++E  Q L++
Sbjct: 130 TVFVPQGEILDLFKGTPKERRKVLNRLLGLEEIGELHRRIKEELQKLKN 178


>gi|42522699|ref|NP_968079.1| chromosome segregation SMC protein [Bdellovibrio bacteriovorus
           HD100]
 gi|39573895|emb|CAE79072.1| chromosome segregation SMC protein [Bdellovibrio bacteriovorus
           HD100]
          Length = 1195

 Score = 33.9 bits (76), Expect = 8.4,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 9/104 (8%)

Query: 8   EFLDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTI----GAQSLEFFYPVVAQKELQS 63
           +++   +  + R++H  GEG + +  +     D + I    GA S  F   ++AQ  +  
Sbjct: 94  KYIKHSEIMVTRRLHRNGEGEYFINKEPARLKDLQEIFMDTGAGSKGF--SIIAQGMIGK 151

Query: 64  FIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRKPNMV 107
            I   P++RR  + +  G   +T  K   +E Q+ L +   N+V
Sbjct: 152 IITAKPEDRRMLIEEAAG---ITKFKARKKESQRKLVATDQNLV 192


>gi|288817659|ref|YP_003432006.1| chromosome segregation ATPase [Hydrogenobacter thermophilus TK-6]
 gi|288787058|dbj|BAI68805.1| chromosome segregation ATPase [Hydrogenobacter thermophilus TK-6]
 gi|308751257|gb|ADO44740.1| chromosome segregation protein SMC [Hydrogenobacter thermophilus
           TK-6]
          Length = 1154

 Score = 33.9 bits (76), Expect = 8.5,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 17  IARQMHEKGEGSFTLIDDIPSGNDFKTIGAQS--LEFFYPVVAQKELQSFIHITPKNRRD 74
           I+R++ + G   F +   +    D K + A++   E  Y +V Q ++  F+ +TP  RR 
Sbjct: 100 ISRKVDKDGRSIFRINGSVIRERDLKDLLAKAGLYENAYNIVLQGDVIRFLRMTPVERRK 159

Query: 75  KLSDILGFGEMTSLK 89
            + ++ G GE    K
Sbjct: 160 LIEEVAGIGEYEEKK 174


>gi|295094865|emb|CBK83956.1| RecF/RecN/SMC N terminal domain. [Coprococcus sp. ART55/1]
          Length = 220

 Score = 33.5 bits (75), Expect = 9.6,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 15/118 (12%)

Query: 10  LDGQKYTIARQMHEKGEGSFTLIDDIPSGND-----FKT-IGAQSLEFFYPVVAQKELQS 63
           +D  + T+AR+++  GE  + +   +    D     F T IG +     Y ++ Q +++ 
Sbjct: 93  IDYNEVTVARRVYRSGESEYLINGTVSRLKDVYSLFFDTGIGKEG----YSIIGQGQIEK 148

Query: 64  FIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRKPNM--VSAAMDPLKKCVG 119
            ++  P+ RR+   +  G  +    K A    ++SL++ + N+  V+  +  L+K VG
Sbjct: 149 ILNGKPEERRELFDEAAGIVKFKKNKAA---AEKSLEAERDNLSRVNDILKELEKQVG 203


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.318    0.134    0.372 

Lambda     K      H
   0.267   0.0411    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 998,592,983
Number of Sequences: 14124377
Number of extensions: 35055595
Number of successful extensions: 87303
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 87294
Number of HSP's gapped (non-prelim): 28
length of query: 121
length of database: 4,842,793,630
effective HSP length: 88
effective length of query: 33
effective length of database: 3,599,848,454
effective search space: 118794998982
effective search space used: 118794998982
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)