RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780641|ref|YP_003065054.1| hypothetical protein
CLIBASIA_02640 [Candidatus Liberibacter asiaticus str. psy62]
(121 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.2 bits (90), Expect = 2e-04
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 89 KTALRELQQSLQ----SRKPNM-VSAAMD 112
K AL++LQ SL+ P + + A M+
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 34.9 bits (80), Expect = 0.004
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 42/102 (41%)
Query: 23 EKGEGSFT--L-IDDIPSGNDFKTIGAQSLEFFYPVVAQKELQSFI-----HITPKNRRD 74
E EG + L I ++ Q+++Q ++ H+ P ++
Sbjct: 329 ENNEGVPSPMLSISNLT---------------------QEQVQDYVNKTNSHL-PAGKQV 366
Query: 75 KLSDILG---F---GEMTSLK---TALRELQQS---LQSRKP 104
++S + G G SL LR+ + QSR P
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
>1ii8_A RAD50 ABC-ATPase; MRE11, DNA double-strand break repair,
replication; 3.02A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 195
Score = 30.8 bits (68), Expect = 0.077
Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 16/106 (15%)
Query: 12 GQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQS---------------LEFFYPVV 56
G KY I R+ + GN++K + S + +
Sbjct: 79 GTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYI 138
Query: 57 AQKELQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSR 102
Q ++ + + + + R + ++L + + L EL++++ +R
Sbjct: 139 RQGQIDAILE-SDEAREKVVREVLNLDKFETAYKKLSELKKTINNR 183
>3kta_A Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xex_A* 1xew_X*
Length = 182
Score = 29.9 bits (66), Expect = 0.13
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 11 DGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQSLEFF--YPVVAQKELQSFIHIT 68
D + I R+++ G S+ L + ++ I ++ Y +V Q ++ FI ++
Sbjct: 96 DEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDGYNIVLQGDITKFIKMS 155
Query: 69 PKNRRDKLSDILGFGEMTSLKT-ALRE 94
P RR + DI G E S K AL E
Sbjct: 156 PLERRLLIDDISGIAEYDSKKEKALEE 182
>1xew_X SMC protein; structural maintenance of chromosomes, ABC-atpases,
condensin, cohesin, cell cycle; 2.00A {Pyrococcus
furiosus} SCOP: c.37.1.12 PDB: 1xex_A*
Length = 182
Score = 28.1 bits (61), Expect = 0.49
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 11 DGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQSLEFF--YPVVAQKELQSFIHIT 68
D + I R+++ G S+ L + ++ I ++ Y +V Q ++ FI ++
Sbjct: 96 DEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDGYNIVLQGDITKFIKMS 155
Query: 69 PKNRRDKLSDILGFGEMTSLKT-ALRE 94
P RR + DI G E S K AL E
Sbjct: 156 PLERRLLIDDISGIAEYDSKKEKALEE 182
>1l8n_A Alpha-D-glucuronidase; hydrolase; HET: GCW XYP; 1.50A {Geobacillus
stearothermophilus} SCOP: c.1.8.10 d.92.2.2 PDB: 1k9d_A*
1mqq_A* 1mqp_A 1mqr_A* 1k9f_A* 1k9e_A*
Length = 679
Score = 27.4 bits (61), Expect = 0.75
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 69 PKNRRDKLSDILGFGEMTSLKTALRELQQSLQS---RKPNMVSAAMDPLKK-CVGT 120
+ R + +I+ + A+ ELQ+ L+S +P +V + +GT
Sbjct: 16 DQYSRLRFEEIVAKRTSPIFQAAVEELQKGLRSMMEIEPQVVQEVNETANSIWLGT 71
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron,
oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2
PDB: 1jpr_A 1jqc_A 1xik_A 1yfd_A 1piy_A 1r65_A 1biq_B*
1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A
1mrr_A 1rnr_A* 1pj0_A 1pj1_A 1av8_A 1pfr_A ...
Length = 375
Score = 27.0 bits (59), Expect = 1.0
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 10 LDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFK 42
D QKY I ++ EK F +++ D
Sbjct: 28 YDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRI 60
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1,
putative class I ribonucleotide reductase,
ribonucleotide reductase; HET: MSE PGE PG4; 1.90A
{Bacillus halodurans c-125}
Length = 346
Score = 26.7 bits (58), Expect = 1.5
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 10 LDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFK 42
D +++ A +++ +F +I +D K
Sbjct: 33 WDDVRFSWAYPLYKNMLANFWTPFEINMSHDAK 65
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; 1.60A {Homo
sapiens} PDB: 2eh9_A 1ryu_A
Length = 125
Score = 26.4 bits (58), Expect = 1.8
Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 14/86 (16%)
Query: 8 EFLDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQSLEFFYPVVAQKELQSFIHI 67
++D M E+G + + +P+ +G + L+ F V KE+ +
Sbjct: 24 LWVD----RYLTFMEERG----SPVSSLPA------VGKKPLDLFRLYVCVKEIGGLAQV 69
Query: 68 TPKNRRDKLSDILGFGEMTSLKTALR 93
+ +L+ L G +S ++L+
Sbjct: 70 NKNKKWRELATNLNVGTSSSAASSLK 95
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene
biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A
{Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A*
1ubx_A* 1fps_A
Length = 367
Score = 25.7 bits (55), Expect = 2.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 54 PVVAQKELQSFIHITPKNRRDKLSDILGFGEMTSLKTALREL 95
PVV ++E + F+ P+ RD D +G E+ L+E+
Sbjct: 21 PVVVEREREEFVGFFPQIVRDLTEDGIGHPEVGDAVARLKEV 62
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, L-threonine metabolism, alternate
conformation lyase; HET: LLP; 1.70A {Salmonella
typhimurium} PDB: 2gn1_A* 2gn2_A*
Length = 342
Score = 25.7 bits (55), Expect = 2.8
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 57 AQKELQSFIHITPKNRRDKLSDILG 81
A+K L I+ T R + S+
Sbjct: 30 AKKRLAGKIYKTGMPRSNYFSERCK 54
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP;
1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Length = 346
Score = 24.5 bits (52), Expect = 6.3
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 57 AQKELQSFIHITPKNRRDKLSDILG 81
A ++ IH+TP L+ + G
Sbjct: 15 AHINIRDSIHLTPVLTSSILNQLTG 39
>1tlq_A Hypothetical protein YPJQ; structural genomics, NYSGXRC, PSI,
protein structure initiative; 2.40A {Bacillus subtilis}
SCOP: a.195.1.1
Length = 189
Score = 24.0 bits (52), Expect = 8.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 9 FLDGQKYTIARQMHEKGEGSFTLIDDIPSG 38
+LD +K I +++ E +G T +DDI +
Sbjct: 120 YLDKEKIGIIKELDESPDGIHTFLDDIVAA 149
>1slq_A VP4; beta sandwich, greek KEY, alpha helical triple coiled-coil,
membrane penetration protein, non-enveloped virus, spike
protein; 3.20A {Rhesus rotavirus} SCOP: f.47.1.1
Length = 278
Score = 24.0 bits (52), Expect = 9.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 27 GSFTLIDDIPSGNDFKT 43
G F+LI +PS +D++T
Sbjct: 219 GRFSLISLVPSNDDYQT 235
>2wb6_A AFV1-102; archaeal virus, viral protein; 1.95A {Acidianus
filamentous virus 1}
Length = 130
Score = 23.9 bits (51), Expect = 9.9
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 8 EFLDGQKYTIAR-QMHEKGEGSFTLID-DIPSGNDFKTIGAQSLEFFYPVVAQKELQSFI 65
EFLD I + +H + +GS + + D+K +GA + ++ + L SFI
Sbjct: 42 EFLDSMFLVIEKLGVHAEKKGSMIFLSSERVKLADWKQLGAMCSDCYH---CKLPLSSFI 98
Query: 66 HITPKNRRDKLSDILGFGEMTSLKTALRELQQ 97
I + +DK + E+T + ++ +Q+
Sbjct: 99 EIVTRKAKDKFLVMYNEKEVTLVARGVQTIQK 130
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.318 0.134 0.372
Gapped
Lambda K H
0.267 0.0456 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 975,494
Number of extensions: 40014
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 20
Length of query: 121
Length of database: 5,693,230
Length adjustment: 81
Effective length of query: 40
Effective length of database: 3,729,466
Effective search space: 149178640
Effective search space used: 149178640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.7 bits)