RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780641|ref|YP_003065054.1| hypothetical protein
CLIBASIA_02640 [Candidatus Liberibacter asiaticus str. psy62]
         (121 letters)



>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase
          (geranyltranstransferase) {Chicken (Gallus gallus)
          [TaxId: 9031]}
          Length = 348

 Score = 26.9 bits (58), Expect = 0.54
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 54 PVVAQKELQSFIHITPKNRRDKLSDILGFGEMTSLKTALREL 95
          PVV ++E + F+   P+  RD   D +G  E+      L+E+
Sbjct: 2  PVVVEREREEFVGFFPQIVRDLTEDGIGHPEVGDAVARLKEV 43


>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia
          coli [TaxId: 562]}
          Length = 339

 Score = 26.3 bits (57), Expect = 0.85
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 10 LDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFK 42
           D QKY I  ++ EK    F   +++    D  
Sbjct: 28 YDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRI 60


>d1h41a2 d.92.2.2 (A:5-151) alpha-D-glucuronidase, N-terminal domain
           {Pseudomonas cellulosa [TaxId: 155077]}
          Length = 147

 Score = 25.3 bits (55), Expect = 1.5
 Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 70  KNRRDKLSDILGFGEMTSLKTALRELQQSLQS---RKPNMVSAAMDPLKKCVGT 120
           K  + ++  +   G+  ++  A  ELQ+ L     +        +      +GT
Sbjct: 20  KTYQKQIRHLHVAGDSPTINAAAAELQRGLSGLLNKPIVARDEKLKDYSLVIGT 73


>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus
          thermophilus [TaxId: 274]}
          Length = 310

 Score = 25.0 bits (53), Expect = 1.9
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 57 AQKELQSFIHITPKNRRDKLSDILG 81
          A + +  + H TP      L  +LG
Sbjct: 9  AFRRIAPYTHRTPLLTSRLLDGLLG 33


>d1slqa_ f.47.1.1 (A:) VP4 membrane interaction domain {Rhesus
           rotavirus [TaxId: 10969]}
          Length = 270

 Score = 24.7 bits (54), Expect = 2.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 27  GSFTLIDDIPSGNDFKTIGAQS 48
           G F+LI  +PS +D++T    S
Sbjct: 214 GRFSLISLVPSNDDYQTPITNS 235


>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
          (SPCC320.14, SPCC330.15c) {Fission yeast
          (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 318

 Score = 24.1 bits (51), Expect = 3.2
 Identities = 4/25 (16%), Positives = 10/25 (40%)

Query: 57 AQKELQSFIHITPKNRRDKLSDILG 81
          A + ++ F + TP      ++    
Sbjct: 11 ASERIKKFANKTPVLTSSTVNKEFV 35


>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 139

 Score = 24.2 bits (52), Expect = 3.7
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 69  PKNRRDKLSDILGFGEMTSLKTALRELQQSLQS---RKPNMVSAAMDPLK 115
            +  R +  +I+        + A+ ELQ+ L+S    +P +V    +   
Sbjct: 13  DQYSRLRFEEIVAKRTSPIFQAAVEELQKGLRSMMEIEPQVVQEVNETAN 62


>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 322

 Score = 22.8 bits (49), Expect = 8.7
 Identities = 7/57 (12%), Positives = 19/57 (33%), Gaps = 16/57 (28%)

Query: 59  KELQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRKPNMVSAAMDPLK 115
           KE+  +  + P+ R++                 L  +   + S   +   + ++  K
Sbjct: 282 KEILEYTKLMPEERKEL----------------LENILAEVDSDIIDKSLSEIEVEK 322


>d1ryua_ a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 120

 Score = 22.9 bits (49), Expect = 9.0
 Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 14/88 (15%)

Query: 8  EFLDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQSLEFFYPVVAQKELQSFIHI 67
           ++D           EK       + ++P       +G + L+ +   V+ KE+     +
Sbjct: 23 MWVD----RYLAFTEEKA----MGMTNLP------AVGRKPLDLYRLYVSVKEIGGLTQV 68

Query: 68 TPKNRRDKLSDILGFGEMTSLKTALREL 95
              +  +L+  L  G  +S  ++L++ 
Sbjct: 69 NKNKKWRELATNLNVGTSSSAASSLKKQ 96


>d1x9ya2 d.17.1.4 (A:41-211) Staphopain B, prodomain
          {Staphylococcus aureus [TaxId: 1280]}
          Length = 171

 Score = 22.6 bits (48), Expect = 9.2
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 9/59 (15%)

Query: 20 QMHEKGEGSFTLIDDIPSGNDFKTI---GAQSLEFFYPVVAQKELQSFIHITPKNRRDK 75
          +      G + L      G  FK     G +   ++YPV+   ++   + ++PKN+ D 
Sbjct: 33 KQSNAKTGKYEL------GEAFKIYKFNGEEDNSYYYPVIKDGKIVYTLTLSPKNKDDL 85


>d1eaka1 a.20.1.2 (A:32-107) Gelatinase A (MMP-2) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 76

 Score = 22.8 bits (49), Expect = 9.8
 Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 11/41 (26%)

Query: 57 AQKELQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQ 97
          A + L +F     ++             +  LK  L+++Q+
Sbjct: 19 AVQYLNTFYGCPKESCN-----------LFVLKDTLKKMQK 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0590    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 419,714
Number of extensions: 17155
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 16
Length of query: 121
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 46
Effective length of database: 1,377,846
Effective search space: 63380916
Effective search space used: 63380916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)