BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780641|ref|YP_003065054.1| hypothetical protein
CLIBASIA_02640 [Candidatus Liberibacter asiaticus str. psy62]
(121 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780641|ref|YP_003065054.1| hypothetical protein CLIBASIA_02640 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 121
Score = 251 bits (641), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MQISAKIEFLDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQSLEFFYPVVAQKE 60
MQISAKIEFLDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQSLEFFYPVVAQKE
Sbjct: 1 MQISAKIEFLDGQKYTIARQMHEKGEGSFTLIDDIPSGNDFKTIGAQSLEFFYPVVAQKE 60
Query: 61 LQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRKPNMVSAAMDPLKKCVGT 120
LQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRKPNMVSAAMDPLKKCVGT
Sbjct: 61 LQSFIHITPKNRRDKLSDILGFGEMTSLKTALRELQQSLQSRKPNMVSAAMDPLKKCVGT 120
Query: 121 R 121
R
Sbjct: 121 R 121
>gi|254780578|ref|YP_003064991.1| phosphatidylserine synthase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 298
Score = 24.6 bits (52), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 74 DKLSDILGFGEMTSLKTALRELQQS 98
D L+D++ FG SL T + L+Q+
Sbjct: 116 DSLADVINFGVAPSLVTYIAVLRQA 140
>gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus
str. psy62]
Length = 509
Score = 23.1 bits (48), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 64 FIHITPKNRRDKLSDILGFGEMTSL 88
++H R K+SD LG G +T+L
Sbjct: 300 YLHSRLLERAAKMSDALGAGSLTAL 324
>gi|254780891|ref|YP_003065304.1| hypothetical protein CLIBASIA_03940 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 215
Score = 22.3 bits (46), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 13/61 (21%)
Query: 12 GQKYTIARQMHEKGEGSFTL------------IDDIPSGNDFKTIGAQSLEFFYPVVAQK 59
G K TI+ Q K E F+L I GN TI + ++F+Y ++
Sbjct: 133 GGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAH 191
Query: 60 E 60
E
Sbjct: 192 E 192
>gi|255764470|ref|YP_003064828.2| integral membrane protein TerC [Candidatus Liberibacter asiaticus
str. psy62]
Length = 523
Score = 22.3 bits (46), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 34 DIPSGNDFKTIGAQSLEFFYPVVAQKELQSFIHITPKNRRDKLSD 78
DIP G + +IG + F+ VA++ + ++P R + +D
Sbjct: 212 DIPKGYLYASIGFSGIIEFFNQVARRNREQL--MSPSRLRARTAD 254
>gi|254780420|ref|YP_003064833.1| carbamoyl phosphate synthase small subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 396
Score = 21.9 bits (45), Expect = 3.2, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 66 HITPKNRRDKLSDILGFGEMTSL 88
H+T RRD I +GE TS
Sbjct: 176 HVTVSQRRDWSEKIWKWGEETSF 198
>gi|254780250|ref|YP_003064663.1| 50S ribosomal protein L24 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 102
Score = 20.8 bits (42), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 2 QISAKIEFLDGQKYTIARQMHE 23
Q+ F+DG+K IA++ E
Sbjct: 77 QVRVGFSFVDGKKIRIAKRSGE 98
>gi|254780698|ref|YP_003065111.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 336
Score = 20.4 bits (41), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 1 MQISAKIEFLDGQKYTIARQMHEKGEGSFTLID 33
+Q+ KI FL ++A ++H K + S +ID
Sbjct: 28 IQLMGKILFLSIIMISMASELHAKPKYSSIVID 60
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.134 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,368
Number of Sequences: 1233
Number of extensions: 2510
Number of successful extensions: 13
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 9
length of query: 121
length of database: 328,796
effective HSP length: 64
effective length of query: 57
effective length of database: 249,884
effective search space: 14243388
effective search space used: 14243388
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)