Query gi|254780642|ref|YP_003065055.1| hypothetical protein CLIBASIA_02645 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 66
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 17:45:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780642.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q04_A Acetoin utilization pro 19.0 26 0.0011 16.7 0.6 11 13-23 84-94 (211)
2 3nrt_A Putative ryanodine rece 9.3 65 0.0027 14.7 0.4 16 6-21 32-47 (103)
3 3f9k_A Integrase; protein-prot 6.6 1.6E+02 0.0067 12.8 1.5 19 1-19 1-19 (210)
4 1wt6_A Myotonin-protein kinase 6.5 1.4E+02 0.0059 13.1 1.1 14 43-56 7-20 (81)
5 3i16_A Aluminum resistance pro 6.5 56 0.0024 15.0 -1.0 19 36-54 178-202 (427)
6 3efd_K KCSA; helix bundle, C-t 5.8 1.8E+02 0.0076 12.5 1.4 11 7-17 11-21 (30)
7 1lrw_B Methanol dehydrogenase 4.5 2.2E+02 0.0094 12.1 2.2 25 6-30 41-73 (83)
8 2gig_A Type II restriction enz 4.0 2.5E+02 0.01 11.9 2.0 32 9-40 91-124 (257)
9 2xpp_A IWS1, ECU08_0440; trans 3.9 2.5E+02 0.01 11.8 0.9 14 5-18 123-136 (145)
10 2kl0_A Putative thiamin biosyn 3.1 2.4E+02 0.01 11.9 0.2 25 14-39 43-67 (73)
No 1
>2q04_A Acetoin utilization protein; ZP_00540088.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.33A {Exiguobacterium sibiricum 255-15}
Probab=19.03 E-value=26 Score=16.74 Aligned_cols=11 Identities=45% Similarity=0.924 Sum_probs=8.3
Q ss_pred HHHHHCCCCCC
Q ss_conf 98764277675
Q gi|254780642|r 13 HERWSQGKFNY 23 (66)
Q Consensus 13 herwsqgkfny 23 (66)
-||||||...+
T Consensus 84 ~ERWs~g~~~~ 94 (211)
T 2q04_A 84 YETWSEGNNPY 94 (211)
T ss_dssp TSGGGCSSCTT
T ss_pred HHHHHHCCCCC
T ss_conf 21343058843
No 2
>3nrt_A Putative ryanodine receptor; PSI-2, protein structure initiative, structural genomics, MI center for structural genomics (MCSG); 2.54A {Bacteroides thetaiotaomicron}
Probab=9.27 E-value=65 Score=14.74 Aligned_cols=16 Identities=25% Similarity=0.756 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHCCCC
Q ss_conf 1346899987642776
Q gi|254780642|r 6 QKSAKALHERWSQGKF 21 (66)
Q Consensus 6 qksakalherwsqgkf 21 (66)
.+-|+..|+||...++
T Consensus 32 e~LAen~H~~Wa~~r~ 47 (103)
T 3nrt_A 32 ERIAENVHEVWAKARI 47 (103)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 3
>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease, magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A
Probab=6.60 E-value=1.6e+02 Score=12.79 Aligned_cols=19 Identities=32% Similarity=0.576 Sum_probs=15.9
Q ss_pred CCCCCHHHHHHHHHHHHCC
Q ss_conf 9325413468999876427
Q gi|254780642|r 1 MVLDNQKSAKALHERWSQG 19 (66)
Q Consensus 1 mvldnqksakalherwsqg 19 (66)
|+++.-..|+-.|++|-+|
T Consensus 1 ~~~~~i~~a~~~H~~~H~~ 19 (210)
T 3f9k_A 1 MVLEKIEPAQEEHEKYHSN 19 (210)
T ss_dssp ----CHHHHHHHHHHHCCC
T ss_pred CCCCCCHHHHHHHHHHCCC
T ss_conf 9634428999999997789
No 4
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=6.52 E-value=1.4e+02 Score=13.06 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=9.9
Q ss_pred CCCEEHHHHHHHHH
Q ss_conf 34000787765456
Q gi|254780642|r 43 NTKMELTELEKSLS 56 (66)
Q Consensus 43 ntkmelteleksls 56 (66)
.|||+|-||--+|-
T Consensus 7 ~~kmeLleLQSALq 20 (81)
T 1wt6_A 7 EAEVTLRELQEALE 20 (81)
T ss_dssp --CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 66778999999999
No 5
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resistance, structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi NT} PDB: 3gwp_A*
Probab=6.50 E-value=56 Score=15.04 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=8.7
Q ss_pred HEEEEEECC------CEEHHHHHHH
Q ss_conf 100155334------0007877654
Q gi|254780642|r 36 SLLEIQINT------KMELTELEKS 54 (66)
Q Consensus 36 slleiqint------kmelteleks 54 (66)
.+++++-|. -+++.++++-
T Consensus 178 ~lv~i~~s~~~~~~p~~~i~dI~~i 202 (427)
T 3i16_A 178 TLVHIQRSTGYGWRRALLIEDIKSI 202 (427)
T ss_dssp EEEEEECSCCSSSSCCCCHHHHHHH
T ss_pred EEEEECCCCCCCCCCCCCHHHHHHH
T ss_conf 7899527998778886579999999
No 6
>3efd_K KCSA; helix bundle, C-terminus, immune system; 2.60A {Escherichia coli}
Probab=5.75 E-value=1.8e+02 Score=12.53 Aligned_cols=11 Identities=45% Similarity=0.978 Sum_probs=7.7
Q ss_pred HHHHHHHHHHH
Q ss_conf 34689998764
Q gi|254780642|r 7 KSAKALHERWS 17 (66)
Q Consensus 7 ksakalherws 17 (66)
....|||||+.
T Consensus 11 rttralherfd 21 (30)
T 3efd_K 11 RTTRALHERFD 21 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 98999999999
No 7
>1lrw_B Methanol dehydrogenase subunit 2; heavy subunits: 8-fold beta-propeller superbarrel, oxidoreductase; HET: PQQ; 2.50A {Paracoccus denitrificans} SCOP: a.137.2.1
Probab=4.47 E-value=2.2e+02 Score=12.07 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=16.7
Q ss_pred HHHHHHHHHHH--------HCCCCCCCCHHHHH
Q ss_conf 13468999876--------42776755013025
Q gi|254780642|r 6 QKSAKALHERW--------SQGKFNYDQDRIDI 30 (66)
Q Consensus 6 qksakalherw--------sqgkfnydqdridi 30 (66)
+.|.++..+|- ..|+|-||-+.|+-
T Consensus 41 ~~sikame~RN~kRv~~fkkTG~f~ydV~ki~g 73 (83)
T 1lrw_B 41 GESLAVMDARNEWRVWNMKKTGKFEYDVKKIDG 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCCGGGSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHCC
T ss_conf 999999999889999999862864876666247
No 8
>2gig_A Type II restriction enzyme hincii; protein DNA complex, indirect readout, DNA intercalation, endonuclease, hydrolase/DNA complex; 1.83A {Haemophilus influenzae} PDB: 2gih_A 2gii_A 2gij_A 3e3y_A 3e40_A 3e41_A 3e42_A 3e43_A 3e44_A 3e45_A 1tx3_A 1tw8_A 1kc6_A 1xhu_A 1xhv_A 2gie_A 2aud_A
Probab=3.98 E-value=2.5e+02 Score=11.86 Aligned_cols=32 Identities=34% Similarity=0.556 Sum_probs=24.0
Q ss_pred HHHHHHHHHCC-CCCCCC-HHHHHHEEEHHEEEE
Q ss_conf 68999876427-767550-130252023010015
Q gi|254780642|r 9 AKALHERWSQG-KFNYDQ-DRIDIIRIASSLLEI 40 (66)
Q Consensus 9 akalherwsqg-kfnydq-dridiiriassllei 40 (66)
.|+..+.||+. .|.+.| |.-||.-+..+..||
T Consensus 91 gk~at~kWS~~n~FeeKQnDtADiL~vkd~fyei 124 (257)
T 2gig_A 91 GKAATENWSIENLFEEKQNDTADILLVKDQFYEL 124 (257)
T ss_dssp CHHHHHHCBTTBCCCCCTTCSCSEEEEETTEEEE
T ss_pred CHHHHHCCCCCCCHHHHCCCCCCEEEECCCCHHH
T ss_conf 5032221330272234317851278861000324
No 9
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=3.92 E-value=2.5e+02 Score=11.84 Aligned_cols=14 Identities=43% Similarity=0.760 Sum_probs=5.6
Q ss_pred CHHHHHHHHHHHHC
Q ss_conf 41346899987642
Q gi|254780642|r 5 NQKSAKALHERWSQ 18 (66)
Q Consensus 5 nqksakalherwsq 18 (66)
|++.|+.|-++|++
T Consensus 123 ik~lA~~Lv~~W~r 136 (145)
T 2xpp_A 123 VRASAKALVQKWTN 136 (145)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999989
No 10
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris}
Probab=3.07 E-value=2.4e+02 Score=11.90 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=0.0
Q ss_pred HHHHCCCCCCCCHHHHHHEEEHHEEE
Q ss_conf 87642776755013025202301001
Q gi|254780642|r 14 ERWSQGKFNYDQDRIDIIRIASSLLE 39 (66)
Q Consensus 14 erwsqgkfnydqdridiiriasslle 39 (66)
++|.+-..+ +.|+|+|++....=+|
T Consensus 43 ~~~~~~~L~-egD~IEIv~~VgGG~~ 67 (73)
T 2kl0_A 43 GKWDETPVT-AGDEIEILTPRQGGLE 67 (73)
T ss_dssp HHHTTCBCC-TTCEEEEECCCCCCCS
T ss_pred HHCCCCCCC-CCCEEEEEEEECCCCC
T ss_conf 993822189-9899999968169843
Done!