Query gi|254780642|ref|YP_003065055.1| hypothetical protein CLIBASIA_02645 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 66 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 08:26:00 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780642.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2gnxa1 a.246.3.1 (A:123-294) 17.5 11 0.00082 17.3 -0.3 43 21-63 8-50 (172) 2 d1tx3a1 c.52.1.19 (A:2-258) Re 7.1 87 0.0063 12.9 1.6 32 9-40 91-124 (257) 3 d1lrwb_ a.137.2.1 (B:) Methano 5.1 1.2E+02 0.0084 12.3 2.2 24 7-30 42-73 (83) 4 d1mxaa2 d.130.1.1 (A:108-231) 5.0 1.1E+02 0.0083 12.3 1.1 37 17-55 59-95 (124) 5 d2r7ka1 c.30.1.8 (A:1-123) 5-f 4.8 1.1E+02 0.0084 12.3 1.0 14 22-35 13-26 (123) 6 d1tdja3 d.58.18.2 (A:424-514) 4.4 55 0.004 13.9 -0.9 41 9-54 28-68 (91) 7 d1w6sb_ a.137.2.1 (B:) Methano 3.7 1.5E+02 0.011 11.7 2.2 23 7-29 42-72 (73) 8 d1hq0a_ d.194.1.1 (A:) Type 1 3.6 1.1E+02 0.0079 12.4 0.1 20 20-39 240-259 (295) 9 d1knxa1 c.98.2.1 (A:1-132) HPr 3.3 1.2E+02 0.0086 12.3 0.0 14 18-31 43-56 (132) 10 d2p02a2 d.130.1.1 (A:148-273) 3.1 1.7E+02 0.013 11.4 0.7 39 17-55 57-97 (126) No 1 >d2gnxa1 a.246.3.1 (A:123-294) Hypothetical protein BC048403 {Mouse (Mus musculus) [TaxId: 10090]} Probab=17.49 E-value=11 Score=17.33 Aligned_cols=43 Identities=16% Similarity=0.276 Sum_probs=35.6 Q ss_pred CCCCCHHHHHHEEEHHEEEEEECCCEEHHHHHHHHHHHHHHHH Q ss_conf 6755013025202301001553340007877654567512120 Q gi|254780642|r 21 FNYDQDRIDIIRIASSLLEIQINTKMELTELEKSLSIVLHEKK 63 (66) Q Consensus 21 fnydqdridiiriasslleiqintkmeltelekslsivlhekk 63 (66) ..+-|.|+++|.+-.++.++-+|.-+..++|...++-+++.-. T Consensus 8 ~~Fi~AR~e~id~Yekm~~~~~~~~~~~~~L~~~l~~Il~~~~ 50 (172) T d2gnxa1 8 CFFVQARMEIADFYEKMYALSTQKFINTEELVSTLDTILRKYS 50 (172) T ss_dssp CTHHHHHHHHHHHHHHHHHGGGSSSCCHHHHHHHHSTTTGGGC T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH T ss_conf 9999999999999999998421464649999999999999864 No 2 >d1tx3a1 c.52.1.19 (A:2-258) Restriction endonuclease HincII {Haemophilus influenzae [TaxId: 727]} Probab=7.06 E-value=87 Score=12.91 Aligned_cols=32 Identities=34% Similarity=0.556 Sum_probs=23.2 Q ss_pred HHHHHHHHHCC-CCCCCC-HHHHHHEEEHHEEEE Q ss_conf 68999876427-767550-130252023010015 Q gi|254780642|r 9 AKALHERWSQG-KFNYDQ-DRIDIIRIASSLLEI 40 (66) Q Consensus 9 akalherwsqg-kfnydq-dridiiriassllei 40 (66) .|+..+.||+. +|.|.| |.-||.-+..+..|| T Consensus 91 Gk~at~~WS~~n~FeeKQnDtADiLvv~d~f~ei 124 (257) T d1tx3a1 91 GKAATENWSIENLFEEKQNDTADILLVKDQFYEL 124 (257) T ss_dssp CHHHHHSCBTTBCCCCCTTCSCSEEEEETTEEEE T ss_pred CCCCCCCCCCCCCHHHHCCCCCCEEEEHHHHHHH T ss_conf 7534313340361335317842268753455667 No 3 >d1lrwb_ a.137.2.1 (B:) Methanol dehydrogenase, light chain {Paracoccus denitrificans [TaxId: 266]} Probab=5.10 E-value=1.2e+02 Score=12.31 Aligned_cols=24 Identities=38% Similarity=0.590 Sum_probs=17.2 Q ss_pred HHHHHHHHHH--------HCCCCCCCCHHHHH Q ss_conf 3468999876--------42776755013025 Q gi|254780642|r 7 KSAKALHERW--------SQGKFNYDQDRIDI 30 (66) Q Consensus 7 ksakalherw--------sqgkfnydqdridi 30 (66) .|.+|..+|- ..|+|-||-+.|+- T Consensus 42 ~si~ame~RN~kRv~~fkkTGkf~ydV~ki~g 73 (83) T d1lrwb_ 42 ESLAVMDARNEWRVWNMKKTGKFEYDVKKIDG 73 (83) T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCCGGGSTT T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEHHHHCC T ss_conf 99999999889999999863864776666247 No 4 >d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Probab=5.01 E-value=1.1e+02 Score=12.33 Aligned_cols=37 Identities=27% Similarity=0.515 Sum_probs=27.8 Q ss_pred HCCCCCCCCHHHHHHEEEHHEEEEEECCCEEHHHHHHHH Q ss_conf 427767550130252023010015533400078776545 Q gi|254780642|r 17 SQGKFNYDQDRIDIIRIASSLLEIQINTKMELTELEKSL 55 (66) Q Consensus 17 sqgkfnydqdridiiriasslleiqintkmelteleksl 55 (66) ||-...|+.++ -+||.+.++..|-.-.+.+.++...+ T Consensus 59 sQVTv~Y~~~~--P~~i~tiViStQH~~~v~~~~lr~~i 95 (124) T d1mxaa2 59 SQVTFQYDDGK--IVGIDAVVLSTQHSEEIDQKSLQEAV 95 (124) T ss_dssp EEEEEEESSSC--EEEEEEEEEEEEECSSSCHHHHHHHH T ss_pred EEEEEEEECCC--CEEEEEEEEECCCCCCCCHHHHHHHH T ss_conf 79999850799--87888888614688766999999999 No 5 >d2r7ka1 c.30.1.8 (A:1-123) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Probab=4.81 E-value=1.1e+02 Score=12.32 Aligned_cols=14 Identities=36% Similarity=0.712 Sum_probs=10.0 Q ss_pred CCCCHHHHHHEEEH Q ss_conf 75501302520230 Q gi|254780642|r 22 NYDQDRIDIIRIAS 35 (66) Q Consensus 22 nydqdridiirias 35 (66) +||.+.+.|--+|| T Consensus 13 ~Yd~~~i~I~t~~S 26 (123) T d2r7ka1 13 KYNKDEITIATLGS 26 (123) T ss_dssp TSCTTSCEEEEESS T ss_pred HCCCCCCEEEEEEC T ss_conf 56844637999705 No 6 >d1tdja3 d.58.18.2 (A:424-514) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]} Probab=4.36 E-value=55 Score=13.91 Aligned_cols=41 Identities=17% Similarity=0.375 Sum_probs=25.4 Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHEEEHHEEEEEECCCEEHHHHHHH Q ss_conf 6899987642776755013025202301001553340007877654 Q gi|254780642|r 9 AKALHERWSQGKFNYDQDRIDIIRIASSLLEIQINTKMELTELEKS 54 (66) Q Consensus 9 akalherwsqgkfnydqdridiiriasslleiqintkmelteleks 54 (66) ...|..||+--.|||-.+.-+ .|.-++-|++.... .++++. T Consensus 28 l~~l~~~~nITeF~YR~~~~~---~a~VlvGi~~~~~~--~~l~~~ 68 (91) T d1tdja3 28 LNTLGTYWNISLFHYRSHGTD---YGRVLAAFELGDHE--PDFETR 68 (91) T ss_dssp HHHHCSCCCCCEEECBCTTTC---SSCEEEEEC------------- T ss_pred HHHHCCCCCEEEEEEEECCCC---EEEEEEEEECCCHH--HHHHHH T ss_conf 998578884778988614887---15599998408536--899999 No 7 >d1w6sb_ a.137.2.1 (B:) Methanol dehydrogenase, light chain {Methylobacterium extorquens [TaxId: 408]} Probab=3.70 E-value=1.5e+02 Score=11.73 Aligned_cols=23 Identities=43% Similarity=0.703 Sum_probs=14.9 Q ss_pred HHHHHHHHHH--------HCCCCCCCCHHHH Q ss_conf 3468999876--------4277675501302 Q gi|254780642|r 7 KSAKALHERW--------SQGKFNYDQDRID 29 (66) Q Consensus 7 ksakalherw--------sqgkfnydqdrid 29 (66) .|.++..+|- ..|+|-||-+.|. T Consensus 42 ~si~ame~RN~~Rv~~fkkTG~f~ydV~ki~ 72 (73) T d1w6sb_ 42 DSIKQMEERNKKRVENFKKTGKFEYDVAKIS 72 (73) T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCCGGGCC T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEHHHHC T ss_conf 9999999988999999986286367377634 No 8 >d1hq0a_ d.194.1.1 (A:) Type 1 cytotoxic necrotizing factor, catalytic domain {Escherichia coli [TaxId: 562]} Probab=3.58 E-value=1.1e+02 Score=12.44 Aligned_cols=20 Identities=25% Similarity=0.157 Sum_probs=14.7 Q ss_pred CCCCCCHHHHHHEEEHHEEE Q ss_conf 76755013025202301001 Q gi|254780642|r 20 KFNYDQDRIDIIRIASSLLE 39 (66) Q Consensus 20 kfnydqdridiiriasslle 39 (66) -|+|+++.++..|...++-- T Consensus 240 ~FdY~~~~~~~~r~G~s~tL 259 (295) T d1hq0a_ 240 VFPYFLDNIPEHGFGTSATV 259 (295) T ss_dssp EEEEEESSCSSSEEEEEEEE T ss_pred EECCCCCCCCCCCCCCEEEE T ss_conf 40477887766775416999 No 9 >d1knxa1 c.98.2.1 (A:1-132) HPr kinase/phoshatase HprK N-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} Probab=3.34 E-value=1.2e+02 Score=12.26 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=8.2 Q ss_pred CCCCCCCCHHHHHH Q ss_conf 27767550130252 Q gi|254780642|r 18 QGKFNYDQDRIDII 31 (66) Q Consensus 18 qgkfnydqdridii 31 (66) -|-|+|+.+||-|+ T Consensus 43 aGff~~~~~RIQIl 56 (132) T d1knxa1 43 LGLFSSQIGSVAIL 56 (132) T ss_dssp TTSCCSCCCBCEEE T ss_pred HCCCCCCCCEEEEE T ss_conf 31002688858998 No 10 >d2p02a2 d.130.1.1 (A:148-273) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Probab=3.09 E-value=1.7e+02 Score=11.41 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=28.8 Q ss_pred HCCCCCCCCHH--HHHHEEEHHEEEEEECCCEEHHHHHHHH Q ss_conf 42776755013--0252023010015533400078776545 Q gi|254780642|r 17 SQGKFNYDQDR--IDIIRIASSLLEIQINTKMELTELEKSL 55 (66) Q Consensus 17 sqgkfnydqdr--idiiriasslleiqintkmelteleksl 55 (66) ||-.+.|+.++ .--+||.+-++..|-.-.+.+.++...+ T Consensus 57 sQVTv~Y~~~~~~~~P~~i~tVViStQH~~~~~~~~l~~~i 97 (126) T d2p02a2 57 TQVTVQYMQDRGAVLPIRVHTIVISVQHDEEVCLDEMRDAL 97 (126) T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEEECSSCCHHHHHHHH T ss_pred EEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHH T ss_conf 79999986699845678998888703565111268899663 Done!