RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780642|ref|YP_003065055.1| hypothetical protein
CLIBASIA_02645 [Candidatus Liberibacter asiaticus str. psy62]
         (66 letters)



>gnl|CDD|144751 pfam01270, Glyco_hydro_8, Glycosyl hydrolases family 8. 
          Length = 325

 Score = 26.7 bits (59), Expect = 1.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 13  HERWSQGKFNYDQDRIDIIRIASSL 37
            ++W  G++NY QD  +II    + 
Sbjct: 109 GKQWGSGRYNYIQDAKNIINAIYNS 133


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.315    0.130    0.347 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 687,838
Number of extensions: 24940
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 2
Length of query: 66
Length of database: 6,263,737
Length adjustment: 37
Effective length of query: 29
Effective length of database: 5,464,204
Effective search space: 158461916
Effective search space used: 158461916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)