BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780642|ref|YP_003065055.1| hypothetical protein
CLIBASIA_02645 [Candidatus Liberibacter asiaticus str. psy62]
(66 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780642|ref|YP_003065055.1| hypothetical protein CLIBASIA_02645 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 66
Score = 133 bits (335), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MVLDNQKSAKALHERWSQGKFNYDQDRIDIIRIASSLLEIQINTKMELTELEKSLSIVLH 60
MVLDNQKSAKALHERWSQGKFNYDQDRIDIIRIASSLLEIQINTKMELTELEKSLSIVLH
Sbjct: 1 MVLDNQKSAKALHERWSQGKFNYDQDRIDIIRIASSLLEIQINTKMELTELEKSLSIVLH 60
Query: 61 EKKENF 66
EKKENF
Sbjct: 61 EKKENF 66
>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 853
Score = 25.8 bits (55), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 8 SAKALHERWSQGKFNYDQDRIDIIRIASSLLEIQINTKME-LTELEKSLSIVLHEKKE 64
SA L R+ +F D+ ID++ AS+ + +QI+TK E L EL++ + I L +KE
Sbjct: 372 SAAVLSNRYITDRFLPDK-AIDLMDEASARVRMQIDTKPEVLDELDRRI-ICLKIEKE 427
>gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1246
Score = 22.3 bits (46), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 22 NYDQDRIDIIRIASSLLEIQINTK 45
N DQD+I +A +L IQ N K
Sbjct: 14 NLDQDKIPSEDVAKTLTSIQDNIK 37
>gi|254780625|ref|YP_003065038.1| formamidopyrimidine-DNA glycosylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 289
Score = 21.9 bits (45), Expect = 1.9, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 37 LLEIQINTKMELTELEKSLSIVLH 60
++++ K L ELE +LSI++H
Sbjct: 50 IIDVSRRAKYLLIELEGNLSIIVH 73
>gi|254780256|ref|YP_003064669.1| 50S ribosomal protein L22 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 131
Score = 21.2 bits (43), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 4 DNQKSAKALHERWSQGKFNYDQDRIDIIRIASSLLEIQINTKMELTELEKSLSIVLHEKK 63
DN+ +A A R S K N I R++ +L +++ + K E+ K+L + +
Sbjct: 14 DNEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAE 73
Query: 64 EN 65
N
Sbjct: 74 NN 75
>gi|254780281|ref|YP_003064694.1| cytochrome-c oxidase assembly factor protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 201
Score = 20.0 bits (40), Expect = 8.2, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 4 DNQKSAKALHERWSQGKFNYDQDRIDIIRIASSL 37
D + K +R+S D ID++R+A +
Sbjct: 105 DTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNF 138
>gi|254781138|ref|YP_003065551.1| hypothetical protein CLIBASIA_05200 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 178
Score = 19.6 bits (39), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 38 LEIQINTKMELTELEKSLSIVLHE 61
+E++IN + L E+E+ + + L E
Sbjct: 32 IEVKINRALRLREMERKIVLSLVE 55
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.315 0.130 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,952
Number of Sequences: 1233
Number of extensions: 1168
Number of successful extensions: 7
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 66
length of database: 328,796
effective HSP length: 37
effective length of query: 29
effective length of database: 283,175
effective search space: 8212075
effective search space used: 8212075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 31 (16.5 bits)