Query gi|254780644|ref|YP_003065057.1| hypothetical protein CLIBASIA_02655 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 289
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Sun May 29 21:10:55 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780644.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1196 Smc Chromosome segrega 63.5 12 0.0003 18.0 7.5 58 179-237 1006-1072(1163)
2 COG0311 PDX2 Predicted glutami 49.0 1.3 3.4E-05 24.4 -2.9 11 160-170 44-54 (194)
3 pfam02273 Acyl_transf_2 Acyl t 46.0 13 0.00033 17.7 1.8 29 125-164 105-133 (294)
4 TIGR01010 BexC_CtrB_KpsE polys 43.6 25 0.00063 15.9 4.8 75 118-192 84-173 (364)
5 pfam04912 Dynamitin Dynamitin. 40.7 27 0.00069 15.6 6.1 67 137-203 290-359 (387)
6 PRK13604 luxD acyl transferase 38.8 19 0.00048 16.6 1.7 29 125-164 110-138 (305)
7 PRK09275 aspartate aminotransf 29.2 41 0.001 14.3 3.3 71 138-208 262-363 (531)
8 pfam01863 DUF45 Protein of unk 28.4 16 0.00041 17.1 -0.0 26 255-283 139-164 (205)
9 pfam04568 IATP Mitochondrial A 27.8 43 0.0011 14.2 3.1 26 162-187 64-89 (90)
10 PRK02122 glucosamine-6-phospha 25.3 6.2 0.00016 19.9 -2.6 32 202-233 383-415 (660)
11 pfam08883 DOPA_dioxygen Dopa 4 24.9 46 0.0012 14.0 1.8 36 174-209 9-47 (104)
12 cd01040 globin Globins are hem 24.8 49 0.0013 13.8 2.4 54 98-151 81-137 (140)
13 COG2120 Uncharacterized protei 24.3 16 0.00041 17.1 -0.7 25 140-164 95-120 (237)
14 KOG2697 consensus 23.7 51 0.0013 13.7 2.4 35 5-42 84-118 (446)
15 TIGR01034 metK S-adenosylmethi 23.4 38 0.00098 14.5 1.1 51 89-139 102-158 (393)
16 COG5139 Uncharacterized conser 22.2 55 0.0014 13.5 2.6 32 181-215 199-231 (397)
17 PTZ00166 DNA polymerase delta 22.2 55 0.0014 13.5 4.2 27 194-220 267-298 (1081)
18 pfam01115 F_actin_cap_B F-acti 22.1 55 0.0014 13.5 2.3 28 167-194 211-238 (240)
19 TIGR00683 nanA N-acetylneurami 21.8 35 0.00089 14.8 0.7 78 122-207 45-127 (294)
20 TIGR03299 LGT_TIGR03299 phage/ 21.3 55 0.0014 13.5 1.6 54 26-79 130-184 (309)
21 KOG4276 consensus 20.9 58 0.0015 13.3 2.7 65 192-259 44-111 (113)
22 KOG3725 consensus 20.8 38 0.00096 14.6 0.7 94 20-128 13-107 (375)
No 1
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=63.50 E-value=12 Score=17.98 Aligned_cols=58 Identities=19% Similarity=0.353 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC---------CCCCCCCCCCEEEEEECCCCCCCCEEEEECCCC
Q ss_conf 77677899988778878878751177---------998888877703641067854330577611110
Q gi|254780644|r 179 HINNLQDKILQDRAKEIKHWYDTLIP---------HPDDSSPNSGVSFDIMEPGHEKTNIYALSYGEQ 237 (289)
Q Consensus 179 hinnlqdkilqdrakeikhwydtlip---------hpddsspnsgvsfdimepghektniyalsygeq 237 (289)
-.-+.-....+.-.+...--|..|.| .||| .-++|+.+-++.||....++-.||-||.
T Consensus 1006 ~~~~~f~~~f~~In~~F~~if~~L~~GG~a~L~l~~~dd-~l~~Giei~a~ppgK~~~~l~~LSGGEK 1072 (1163)
T COG1196 1006 EKRERFKETFDKINENFSEIFKELFGGGTAELELTEPDD-PLTAGIEISARPPGKKLQSLSLLSGGEK 1072 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-HHHCCCEEEEECCCCCCCCCCCCCCCHH
T ss_conf 999999999999999999999983799628998689986-2325958997389986562121486189
No 2
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=49.02 E-value=1.3 Score=24.41 Aligned_cols=11 Identities=45% Similarity=0.311 Sum_probs=5.2
Q ss_pred CCCCHHHHHHH
Q ss_conf 10052889999
Q gi|254780644|r 160 TKYGESLQILR 170 (289)
Q Consensus 160 tkygeslqilr 170 (289)
---|||-.|-|
T Consensus 44 iPGGESTTi~r 54 (194)
T COG0311 44 IPGGESTTIGR 54 (194)
T ss_pred ECCCCHHHHHH
T ss_conf 54950789999
No 3
>pfam02273 Acyl_transf_2 Acyl transferase. This bacterial family of Acyl transferases (or myristoyl-acp-specific thioesterases) catalyse the first step in the bioluminescent fatty acid reductase system.
Probab=45.99 E-value=13 Score=17.74 Aligned_cols=29 Identities=45% Similarity=0.572 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEECCCCH
Q ss_conf 8876665543034206699999998528782788710052
Q gi|254780644|r 125 EFAHSLSARIASSENAQVIEALYDIVKNRNDIMLLTKYGE 164 (289)
Q Consensus 125 efahslsariassenaqviealydivknrndimlltkyge 164 (289)
-.|.||||||| |+++..+|--.|.|.-|-
T Consensus 105 lIAaSLSARIA-----------Y~v~~ei~lsfLiTAVGV 133 (294)
T pfam02273 105 LIASSLSARIA-----------YEVISEINLSFLITAVGV 133 (294)
T ss_pred HHHHHHHHHHH-----------HHHHHHCCHHEEEEEEEE
T ss_conf 45776778999-----------998742132116665455
No 4
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family; InterPro: IPR005705 This family contains gamma proteobacterial proteins involved in ATP-dependent capsule polysaccharide export , .; GO: 0015542 sugar efflux transmembrane transporter activity, 0006859 extracellular carbohydrate transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=43.60 E-value=25 Score=15.85 Aligned_cols=75 Identities=28% Similarity=0.382 Sum_probs=54.4
Q ss_pred HHCCCHHHHHH--HHHHHHHCCCC-HHHHHHHHHHHCCCCCEEEECCCC------------HHHHHHHHHHHHHHHHHHH
Q ss_conf 32223078876--66554303420-669999999852878278871005------------2889999987888987767
Q gi|254780644|r 118 TYMPIGEEFAH--SLSARIASSEN-AQVIEALYDIVKNRNDIMLLTKYG------------ESLQILRRLTQETEKHINN 182 (289)
Q Consensus 118 tympigeefah--slsariassen-aqviealydivknrndimlltkyg------------eslqilrrltqetekhinn 182 (289)
.-+|+-+-|.+ ..-++.-.-.- ...-|+.|+--|+|-.+-+=..-| ++.+|-.++-.|.|.|||.
T Consensus 84 K~L~~r~~f~~~GD~~~~Fn~l~~P~~~~E~Fy~Yy~~~l~v~~D~~sG~~~l~~~aF~a~~a~~~nq~lLk~~E~~IN~ 163 (364)
T TIGR01010 84 KELPLREFFEEKGDLLSRFNRLGKPNGTQEAFYRYYKKRLSVDVDSVSGILTLNVRAFDAEEAQKINQRLLKEGERLINR 163 (364)
T ss_pred HHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHHHHHCCCEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 65007898863377346515678898776515687873112202041102565552128788889999999877799978
Q ss_pred HHHHHHHHHH
Q ss_conf 7899988778
Q gi|254780644|r 183 LQDKILQDRA 192 (289)
Q Consensus 183 lqdkilqdra 192 (289)
|-+++-.|+-
T Consensus 164 l~~R~~~d~~ 173 (364)
T TIGR01010 164 LNERARKDTI 173 (364)
T ss_pred HHHHHHHHHH
T ss_conf 9899999999
No 5
>pfam04912 Dynamitin Dynamitin. Dynamitin is a subunit of the microtubule-dependent motor complex and in implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS).
Probab=40.67 E-value=27 Score=15.55 Aligned_cols=67 Identities=16% Similarity=0.283 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHCCCCCEE-EECCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCC
Q ss_conf 420669999999852878278-871005288999998788898776778--9998877887887875117
Q gi|254780644|r 137 SENAQVIEALYDIVKNRNDIM-LLTKYGESLQILRRLTQETEKHINNLQ--DKILQDRAKEIKHWYDTLI 203 (289)
Q Consensus 137 senaqviealydivknrndim-lltkygeslqilrrltqetekhinnlq--dkilqdrakeikhwydtli 203 (289)
.+..+-|.+||++++.-+.+- +|.---+-|+-||.|..+...-...|. ++..++-.++|+.|-..|.
T Consensus 290 ~~~~~KI~eLY~~l~~~~~~~~~LP~vl~RL~sL~~lH~~A~~f~~~L~~Le~~Q~~~~~~l~~~~e~L~ 359 (387)
T pfam04912 290 ADTQSKISELYELMQKWDPVVSSLPDVVNRLLTLKSLHEQASQFSQLLAHLETTQQDIENSLASNKELLT 359 (387)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2156689999999875777763515899999999999999999999999999999999999999999999
No 6
>PRK13604 luxD acyl transferase; Provisional
Probab=38.77 E-value=19 Score=16.62 Aligned_cols=29 Identities=41% Similarity=0.555 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEECCCCH
Q ss_conf 8876665543034206699999998528782788710052
Q gi|254780644|r 125 EFAHSLSARIASSENAQVIEALYDIVKNRNDIMLLTKYGE 164 (289)
Q Consensus 125 efahslsariassenaqviealydivknrndimlltkyge 164 (289)
-.|.||||||| |+++..++--.|.|.-|-
T Consensus 110 lIAaSLSARIA-----------Y~v~~eidlsfLiTAVGV 138 (305)
T PRK13604 110 LIAASLSARIA-----------YEVINEIDLSFLITAVGV 138 (305)
T ss_pred HHHHHHHHHHH-----------HHHHHHCCHHEEEEEEEE
T ss_conf 46776788999-----------998742123204554355
No 7
>PRK09275 aspartate aminotransferase; Provisional
Probab=29.22 E-value=41 Score=14.34 Aligned_cols=71 Identities=31% Similarity=0.567 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHCC-CCCEEEECC--CCHHHHHHHHHHH------------------------HHHHHHHHHHHHHHH-
Q ss_conf 206699999998528-782788710--0528899999878------------------------889877677899988-
Q gi|254780644|r 138 ENAQVIEALYDIVKN-RNDIMLLTK--YGESLQILRRLTQ------------------------ETEKHINNLQDKILQ- 189 (289)
Q Consensus 138 enaqviealydivkn-rndimlltk--ygeslqilrrltq------------------------etekhinnlqdkilq- 189 (289)
-+...++.+-+||++ |.|+|.+|. ||.-..-.+-|-. -..-|-+|.-|+.+.
T Consensus 262 ls~e~l~~i~~IV~~~nPdLmIiTDDVYgTF~~~F~Sl~a~~P~NTi~VYSfSKyFGaTGWRLG~Ialh~~NvfD~~i~~ 341 (531)
T PRK09275 262 MSDESLEKIADIVKEDRPDLMIITDDVYGTFVDDFRSLFAELPYNTLLVYSFSKYFGATGWRLGVIALHEDNVFDKLIAE 341 (531)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEHHHHCCCCEEEEEEEHHCCCCCCCCCEEEEECCCCCHHHHHHH
T ss_conf 69999999999997429987999546532264564636564887547888631005884411034454103307799986
Q ss_pred ---HHHHHHHHHHHHCCCCCCC
Q ss_conf ---7788788787511779988
Q gi|254780644|r 190 ---DRAKEIKHWYDTLIPHPDD 208 (289)
Q Consensus 190 ---drakeikhwydtliphpdd 208 (289)
++-++...-|.++.++|+.
T Consensus 342 Lp~~~k~~L~~RY~~lt~~P~~ 363 (531)
T PRK09275 342 LPEEKKKELDKRYSSLTTEPEK 363 (531)
T ss_pred CCHHHHHHHHHHHHHCCCCCCC
T ss_conf 6887899999877554688233
No 8
>pfam01863 DUF45 Protein of unknown function DUF45. This protein has no known function. Members are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines. This motif is similar to that found in Zinc proteases, suggesting that this family may also be proteases.
Probab=28.36 E-value=16 Score=17.12 Aligned_cols=26 Identities=23% Similarity=0.638 Sum_probs=17.7
Q ss_pred EECCCCHHHCCCCEEEEEEEEEEECCEEE
Q ss_conf 00013001015733688987653311002
Q gi|254780644|r 255 AVWGSCAPLLNNHHLALSFSIIQFNRWMI 283 (289)
Q Consensus 255 avwgscapllnnhhlalsfsiiqfnrwmi 283 (289)
.-||||.+ +..+.|+.-+|.+....|
T Consensus 139 sRWGSCs~---~~~I~lN~rLi~~P~~~i 164 (205)
T pfam01863 139 TRWGSCSS---KGRIRLNWRLVKAPPEVI 164 (205)
T ss_pred CHHCCCCC---CCCEEEEHHHHCCCHHHH
T ss_conf 42201689---998887402203998996
No 9
>pfam04568 IATP Mitochondrial ATPase inhibitor, IATP. ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP. The minimum inhibitory region for bovine inhibitor is from residues 39 to 72. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH, the inhibitor forms a dimer via antiparallel coiled coil interactions between the C terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity.
Probab=27.83 E-value=43 Score=14.18 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 05288999998788898776778999
Q gi|254780644|r 162 YGESLQILRRLTQETEKHINNLQDKI 187 (289)
Q Consensus 162 ygeslqilrrltqetekhinnlqdki 187 (289)
--|-|.-||.--++-.+||+.|++.|
T Consensus 64 ekEqL~~Lk~~l~~q~~~i~~le~~I 89 (90)
T pfam04568 64 EKEQLAALKEKLEEHKKEIEELEKHI 89 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999998744
No 10
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=25.31 E-value=6.2 Score=19.91 Aligned_cols=32 Identities=38% Similarity=0.680 Sum_probs=24.5
Q ss_pred CCCCCCCCCCCCCEEEE-EECCCCCCCCEEEEE
Q ss_conf 17799888887770364-106785433057761
Q gi|254780644|r 202 LIPHPDDSSPNSGVSFD-IMEPGHEKTNIYALS 233 (289)
Q Consensus 202 liphpddsspnsgvsfd-imepghektniyals 233 (289)
.-|||||.--.-|-.|+ ..+-|||-.-.|--|
T Consensus 383 FSPHPDDDVISMGGT~~RLv~QGHeVHVAYqTS 415 (660)
T PRK02122 383 FSPHPDDDVISMGGTFRRLVEQGHDVHVAYQTS 415 (660)
T ss_pred ECCCCCCCEECCCHHHHHHHHCCCEEEEEEECC
T ss_conf 689998675405477999996698579999657
No 11
>pfam08883 DOPA_dioxygen Dopa 4,5-dioxygenase family. This family of proteins are related to a DOPA 4,5-dioxygenase that is involved in synthesis of betalain. DOPA-dioxygenase is the key enzyme involved in betalain biosynthesis. It converts 3,4-dihydroxyphenylalanine to betalamic acid, a yellow chromophore.
Probab=24.92 E-value=46 Score=14.04 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHCC-CCCCCC
Q ss_conf 888987767789998877887--887875117-799888
Q gi|254780644|r 174 QETEKHINNLQDKILQDRAKE--IKHWYDTLI-PHPDDS 209 (289)
Q Consensus 174 qetekhinnlqdkilqdrake--ikhwydtli-phpdds 209 (289)
.++.+.-..|.++|.+....+ +-.|.+..| |||.-|
T Consensus 9 ~~~~~~A~~L~~~i~~~f~~~~~~gr~~~kpVGPHp~~s 47 (104)
T pfam08883 9 EASREAAKALREKILEEFPDVLLLGRVHEKPVGPHPVWS 47 (104)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCE
T ss_conf 765999999999999864000125630137789986846
No 12
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=24.77 E-value=49 Score=13.82 Aligned_cols=54 Identities=19% Similarity=0.342 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---CCCCHHHHHHHHHHHC
Q ss_conf 66776532122456542112322230788766655430---3420669999999852
Q gi|254780644|r 98 YSTVIANLTDSHQKYATNIATYMPIGEEFAHSLSARIA---SSENAQVIEALYDIVK 151 (289)
Q Consensus 98 ystvianltdshqkyatniatympigeefahslsaria---ssenaqviealydivk 151 (289)
....+..|...|.+|.....-|...|+-+...+..... +.|..+.-..+|+.+-
T Consensus 81 l~~~l~~lg~~H~~~~v~~~~f~~~~~~l~~~l~~~l~~~~~~~~~~AW~~~~~~i~ 137 (140)
T cd01040 81 LKALLAKLGRKHAKRGVDPEHFKLFGEALLEVLAEVLGDDFTPEVKAAWDKLLDVIA 137 (140)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999988989877999999999999999999988372189999999999999999
No 13
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=24.35 E-value=16 Score=17.13 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHCC-CCCEEEECCCCH
Q ss_conf 6699999998528-782788710052
Q gi|254780644|r 140 AQVIEALYDIVKN-RNDIMLLTKYGE 164 (289)
Q Consensus 140 aqviealydivkn-rndimlltkyge 164 (289)
....++|-+|+.. |.+..+.+-...
T Consensus 95 ~~~~~~L~~ii~~~~P~~V~t~~~~d 120 (237)
T COG2120 95 EEITGALVAIIRRLRPDVVFTPYPDD 120 (237)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 99999999999853997799825888
No 14
>KOG2697 consensus
Probab=23.71 E-value=51 Score=13.68 Aligned_cols=35 Identities=34% Similarity=0.434 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCC
Q ss_conf 15778864323688999986228520134474341131
Q gi|254780644|r 5 NEKLKEACDVATDSIRSFFMQAKPYILPALSKEEQKSL 42 (289)
Q Consensus 5 neklkeacdvatdsirsffmqakpyilpalskeeqksl 42 (289)
.+..||+-|++-|.|+.|....++ +.++-|.++..
T Consensus 84 ~~~~KEa~Dva~~Ni~aFH~aQl~---~t~~Vetm~GV 118 (446)
T KOG2697 84 DSNVKEAFDVAYDNIYAFHLAQLS---TTKSVETMKGV 118 (446)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCC---CCEEEECCCCE
T ss_conf 577888777788889998874078---63134225753
No 15
>TIGR01034 metK S-adenosylmethionine synthetase; InterPro: IPR002133 S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP . AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance .; GO: 0004478 methionine adenosyltransferase activity, 0005524 ATP binding, 0006730 one-carbon compound metabolic process.
Probab=23.38 E-value=38 Score=14.54 Aligned_cols=51 Identities=31% Similarity=0.363 Sum_probs=33.5
Q ss_pred CCCCCCCCCH-HHHHHHHHHHHH----HHHHHH-HHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 3310112566-677653212245----654211-23222307887666554303420
Q gi|254780644|r 89 PQAVEYEKPY-STVIANLTDSHQ----KYATNI-ATYMPIGEEFAHSLSARIASSEN 139 (289)
Q Consensus 89 pqaveyekpy-stvianltdshq----kyatni-atympigeefahslsariassen 139 (289)
-|+|+.+.+. ......+--.-| -||||= ..+||.+-..||+|..|++.-..
T Consensus 102 ~qgv~~~~~~~~~~~~~~GAGDQGimFGYAt~ET~~~MPlpi~lAH~l~~~~~~~Rk 158 (393)
T TIGR01034 102 AQGVDKENEVLKEEAEELGAGDQGIMFGYATNETPELMPLPITLAHKLLKRAAELRK 158 (393)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 987531005788888732898405785442240000087779999999999998512
No 16
>COG5139 Uncharacterized conserved protein [Function unknown]
Probab=22.19 E-value=55 Score=13.49 Aligned_cols=32 Identities=38% Similarity=0.719 Sum_probs=21.5
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCCE
Q ss_conf 67789998877-887887875117799888887770
Q gi|254780644|r 181 NNLQDKILQDR-AKEIKHWYDTLIPHPDDSSPNSGV 215 (289)
Q Consensus 181 nnlqdkilqdr-akeikhwydtliphpddsspnsgv 215 (289)
.+|||.||... -.+++-|. -|-||.|-||-.+
T Consensus 199 ~~L~dtiLDnniLdsVr~WL---EPLPD~SlP~~~I 231 (397)
T COG5139 199 KALQDTILDNNILDSVRGWL---EPLPDKSLPNIKI 231 (397)
T ss_pred HHHHHHHHHCCHHHHHHHHH---CCCCCCCCCCHHH
T ss_conf 88888775001699887651---3688777750578
No 17
>PTZ00166 DNA polymerase delta catalytic subunit; Provisional
Probab=22.17 E-value=55 Score=13.48 Aligned_cols=27 Identities=41% Similarity=0.627 Sum_probs=14.7
Q ss_pred HHHHHHHHCCCCCCCC-----CCCCCEEEEEE
Q ss_conf 7887875117799888-----88777036410
Q gi|254780644|r 194 EIKHWYDTLIPHPDDS-----SPNSGVSFDIM 220 (289)
Q Consensus 194 eikhwydtliphpdds-----spnsgvsfdim 220 (289)
|+.--|+.|++||++. .|---.||||-
T Consensus 267 E~~~~~~~l~~~~~~~ew~~iaPlrilSfDIE 298 (1081)
T PTZ00166 267 EVDISYEDLIPLPLEGEYQTIPPIRILSFDIE 298 (1081)
T ss_pred EEEECHHHEEECCCCCCCCCCCCCEEEEEEEE
T ss_conf 99974687077665567666888169998678
No 18
>pfam01115 F_actin_cap_B F-actin capping protein, beta subunit.
Probab=22.05 E-value=55 Score=13.47 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999987888987767789998877887
Q gi|254780644|r 167 QILRRLTQETEKHINNLQDKILQDRAKE 194 (289)
Q Consensus 167 qilrrltqetekhinnlqdkilqdrake 194 (289)
--+.|+-.+.|-.+.|.-+.|.-..+|+
T Consensus 211 ~NiG~mIEdmE~~~R~~L~~VYf~Ktkd 238 (240)
T pfam01115 211 VNIGRLIEDMENKMRNLLEEVYFGKTKD 238 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHEEHHHHC
T ss_conf 9898899999999998766622000320
No 19
>TIGR00683 nanA N-acetylneuraminate lyase; InterPro: IPR005264 N-acetylneuraminate lyase catalyzes the cleavage of N-acetylneuraminic acid (sialic acid) to form pyruvate and N-acetyl-D-mannosamine. The enzyme plays an important role in the regulation of sialic acid metabolism in bacteria..
Probab=21.82 E-value=35 Score=14.83 Aligned_cols=78 Identities=23% Similarity=0.389 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEECCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3078876665543034206699999998528782788710052-----88999998788898776778999887788788
Q gi|254780644|r 122 IGEEFAHSLSARIASSENAQVIEALYDIVKNRNDIMLLTKYGE-----SLQILRRLTQETEKHINNLQDKILQDRAKEIK 196 (289)
Q Consensus 122 igeefahslsariassenaqviealydivknrndimlltkyge-----slqilrrltqetekhinnlqdkilqdrakeik 196 (289)
.||.|..|++- ..||.+-.-|-.| ..|-|...-|- |.|.-..-+.--=.-+.-..-=-..=--.|++
T Consensus 45 TGE~F~~S~~E------~~~~l~I~~~EAK--~~I~LIA~VG~V~~~E~~~L~~~A~~~GyD~~SAVTPFYY~FSF~E~~ 116 (294)
T TIGR00683 45 TGEAFVLSLEE------KKEVLRIVKDEAK--DKIKLIAQVGSVSLKEAVELAKYAKRLGYDALSAVTPFYYKFSFEEIK 116 (294)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHCC--CCEEEEEEECCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHH
T ss_conf 15677531788------9999999987302--502221010520378899999988873671112036666788736777
Q ss_pred HHHHHCCCCCC
Q ss_conf 78751177998
Q gi|254780644|r 197 HWYDTLIPHPD 207 (289)
Q Consensus 197 hwydtliphpd 207 (289)
|+|||.|...|
T Consensus 117 ~~Y~~II~~~~ 127 (294)
T TIGR00683 117 DYYDAIIDEAD 127 (294)
T ss_pred HHHHHHHHHCC
T ss_conf 78999985248
No 20
>TIGR03299 LGT_TIGR03299 phage/plasmid-related protein TIGR03299. Members of this uncharacterized protein family are found in various Mycobacterium phage genomes, in Streptomyces coelicolor plasmid SCP1, and in bacterial genomes near various markers that suggest lateral gene transfer. The function is unknown.
Probab=21.33 E-value=55 Score=13.46 Aligned_cols=54 Identities=15% Similarity=0.321 Sum_probs=40.3
Q ss_pred CCCCCCCCCCHHHHCCCCEEEECCHHHHHHHHHH-HHHHCCCCCHHHHHHHHHHH
Q ss_conf 2852013447434113117870340379999866-53200245113565779999
Q gi|254780644|r 26 AKPYILPALSKEEQKSLKYFFLPENTLCQKFFNA-FDRHATAGIEIKKTMNATLQ 79 (289)
Q Consensus 26 akpyilpalskeeqkslkyfflpentlcqkffna-fdrhatagieikktmnatlq 79 (289)
-+||+|-+-|..-..+..+.|.|-...|+.-++. ..+.+...+.|..|.++.-+
T Consensus 130 v~~yll~~~shdG~~~~~~~~t~iRvVC~NTl~~Al~~~~~~~~kirHt~~~d~~ 184 (309)
T TIGR03299 130 VRPYLLLATAHDGTLATTAQFTSVRVVCANTLAAALGERGGTVVKVRHTAKFDAR 184 (309)
T ss_pred EEEEEEEEECCCCCCCEEEEECCEEEEEHHHHHHHHHHCCCCEEEECCCCHHHHH
T ss_conf 5015899706658743399964448876999999864114675882374115578
No 21
>KOG4276 consensus
Probab=20.90 E-value=58 Score=13.31 Aligned_cols=65 Identities=26% Similarity=0.353 Sum_probs=45.6
Q ss_pred HHHHHHHHHHCCCCCCCCC---CCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCHHHCEEEEEEEEECCC
Q ss_conf 8878878751177998888---8777036410678543305776111102576673230310123200013
Q gi|254780644|r 192 AKEIKHWYDTLIPHPDDSS---PNSGVSFDIMEPGHEKTNIYALSYGEQMSAPANLSECQLNCLGLAVWGS 259 (289)
Q Consensus 192 akeikhwydtliphpddss---pnsgvsfdimepghektniyalsygeqmsapanlsecqlnclglavwgs 259 (289)
.|.-|.|- +|+-|.||.| |.|-.+..|-+++.++ -|..---.|+...|.-+.--|-|.|+..+|-
T Consensus 44 S~DgktWt-~l~vH~DD~sl~epGstAtWpi~~a~~~~--~fRffRi~q~G~nasgqThylscsgfElYG~ 111 (113)
T KOG4276 44 SKDGKTWT-DLRVHVDDKSLCEPGSTATWPITAANDLL--PFRFFRIVQNGKNASGQTHYLSCSGFELYGY 111 (113)
T ss_pred CCCCCCCE-EEEEEECCCCCCCCCCCCCCCCCCCCCCC--CEEEEEEEECCCCCCCCCCEEEEEEEEEEEE
T ss_conf 30677415-67997056434578851200346766666--3379998862778888631057666888877
No 22
>KOG3725 consensus
Probab=20.77 E-value=38 Score=14.60 Aligned_cols=94 Identities=28% Similarity=0.328 Sum_probs=60.1
Q ss_pred HHHHHHCCCCCCCCCCHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 99986228520134474341131178703403799998665320024511356577999999746889833101125666
Q gi|254780644|r 20 RSFFMQAKPYILPALSKEEQKSLKYFFLPENTLCQKFFNAFDRHATAGIEIKKTMNATLQFLQKVPTADPQAVEYEKPYS 99 (289)
Q Consensus 20 rsffmqakpyilpalskeeqkslkyfflpentlcqkffnafdrhatagieikktmnatlqflqkvptadpqaveyekpys 99 (289)
..||-.|+.+.-..+.+.|.. .|-..|-|-..|.....+-..|-|.+|--+||.-|++.-..+-|||---
T Consensus 13 G~FfsRAvQfTEEkfgqAEkT----------ELDaHfENLL~rAd~Tk~wTekil~qtEvlLQPNP~aR~EEf~YEKLdr 82 (375)
T KOG3725 13 GGFFSRAVQFTEEKFGQAEKT----------ELDAHFENLLQRADKTKDWTEKILSQTEVLLQPNPTARMEEFFYEKLDR 82 (375)
T ss_pred CHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHC
T ss_conf 037898998749886126676----------6788999999875200278999998634101799624299999999851
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC-CHHHHHH
Q ss_conf 7765321224565421123222-3078876
Q gi|254780644|r 100 TVIANLTDSHQKYATNIATYMP-IGEEFAH 128 (289)
Q Consensus 100 tvianltdshqkyatniatymp-igeefah 128 (289)
. .+|.|.-..-.++||. -|+||..
T Consensus 83 K-----~psR~nN~ElL~qyM~dAg~efGp 107 (375)
T KOG3725 83 K-----KPSRQNNLELLSQYMTDAGEEFGP 107 (375)
T ss_pred C-----CCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 4-----863337899999999987874299
Done!