Query gi|254780644|ref|YP_003065057.1| hypothetical protein CLIBASIA_02655 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 289 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 31 17:42:36 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780644.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2zs0_A Extracellular giant hem 41.2 16 0.00068 15.6 3.0 53 98-151 83-135 (140) 2 1j7q_A CAVP, calcium vector pr 40.8 13 0.00055 16.3 2.3 32 49-84 12-43 (86) 3 1yym_M F23, scorpion-toxin mim 36.2 3 0.00013 20.5 -1.6 21 243-263 2-22 (27) 4 1h97_A Globin-3; HET: HEM; 1.1 29.6 19 0.00081 15.1 1.7 52 97-148 86-137 (147) 5 1out_A Hemoglobin I; heme, oxy 29.0 25 0.0011 14.3 4.6 53 99-151 79-135 (143) 6 3bom_A Hemoglobin subunit alph 28.7 25 0.0011 14.3 3.8 54 98-151 78-135 (143) 7 1yhu_B Giant hemoglobins B cha 25.6 25 0.0011 14.3 1.7 55 98-152 85-140 (144) 8 1x9f_B Erythrocruorin, globin 24.9 30 0.0012 13.8 3.4 53 99-151 86-138 (145) 9 1pnh_A Scorpion toxin; NMR {An 22.3 7.9 0.00033 17.7 -1.4 21 242-262 3-23 (31) 10 1yhu_A Hemoglobin A1 chain; gl 18.1 40 0.0017 12.9 4.4 73 72-152 65-137 (145) No 1 >2zs0_A Extracellular giant hemoglobin major globin subunit A1; annelida, calcium, magnesium, cooperativity, heme, iron, metal-binding; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_A* 2d2m_A* 2zfo_A* 2zs1_A* Probab=41.20 E-value=16 Score=15.61 Aligned_cols=53 Identities=11% Similarity=0.266 Sum_probs=40.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC Q ss_conf 667765321224565421123222307887666554303420669999999852 Q gi|254780644|r 98 YSTVIANLTDSHQKYATNIATYMPIGEEFAHSLSARIASSENAQVIEALYDIVK 151 (289) Q Consensus 98 ystvianltdshqkyatniatympigeefahslsariassenaqviealydivk 151 (289) ....+..|...|++|......|..+|+-|...+..... +.+.+--+.+|+.+- T Consensus 83 l~~~l~~Lg~~H~~~gv~~~~f~~~~~~l~~~l~~~l~-~~~~~AW~~~~~~I~ 135 (140) T 2zs0_A 83 INADLAHLAGQHASRNLDASNFAAMGQAVMSVVPTHLD-CFNQHAWGECYERIA 135 (140) T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHGGGGCS-CCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHH T ss_conf 99999999998882799999999999999999998869-000999999999999 No 2 >1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A Probab=40.82 E-value=13 Score=16.25 Aligned_cols=32 Identities=38% Similarity=0.644 Sum_probs=22.7 Q ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC Q ss_conf 403799998665320024511356577999999746 Q gi|254780644|r 49 ENTLCQKFFNAFDRHATAGIEIKKTMNATLQFLQKV 84 (289) Q Consensus 49 entlcqkffnafdrhatagieikktmnatlqflqkv 84 (289) |..-|-|.|..|||.|..-..+..||. .|.|. T Consensus 12 ekdecmkifdifdrnaeniapvsdtmd----mltkl 43 (86) T 1j7q_A 12 EKDECMKIFDIFDRNAENIAPVSDTMD----MLTKL 43 (86) T ss_dssp HHHHHHHHHHHHSTTTTSCBCHHHHHH----HHHHT T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHH----HHHHH T ss_conf 577899999997035211577102899----99996 No 3 >1yym_M F23, scorpion-toxin mimic of CD4, exterior membrane glycoprotein(GP120); HIV-1, YU2, CD4 mimic, antibody, viral protein/immune system complex; HET: NAG NDG; 2.20A {Homo sapiens} SCOP: k.23.1.2 PDB: 1yyl_M* 2i60_M* 2i5y_M* 1d5q_A Probab=36.18 E-value=3 Score=20.55 Aligned_cols=21 Identities=48% Similarity=0.865 Sum_probs=17.9 Q ss_pred CHHHCEEEEEEEEECCCCHHH Q ss_conf 732303101232000130010 Q gi|254780644|r 243 NLSECQLNCLGLAVWGSCAPL 263 (289) Q Consensus 243 nlsecqlnclglavwgscapl 263 (289) ||.-|||.|-.|...|.||.- T Consensus 2 nlhfcqlrckslgllgkcags 22 (27) T 1yym_M 2 NLHFCQLRCKSLGLLGKCAGS 22 (27) T ss_dssp CHHHHHHHHHTTTCCEEEETT T ss_pred CCCHHHHHHHHHCHHHHHCCC T ss_conf 613110121241224542464 No 4 >1h97_A Globin-3; HET: HEM; 1.17A {Paramphistomum epiclitum} SCOP: a.1.1.2 PDB: 1kfr_A* Probab=29.61 E-value=19 Score=15.09 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=39.2 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 6667765321224565421123222307887666554303420669999999 Q gi|254780644|r 97 PYSTVIANLTDSHQKYATNIATYMPIGEEFAHSLSARIASSENAQVIEALYD 148 (289) Q Consensus 97 pystvianltdshqkyatniatympigeefahslsariassenaqviealyd 148 (289) .....+..|...|.++.....-|-.+++-|--.+......+.+....++.++ T Consensus 86 ~l~~~l~~Lg~~H~~~gV~~~~f~~~~~~li~~l~~~lg~~~~~~a~~~~~~ 137 (147) T 1h97_A 86 EVKKIAAQYGKDHTSRKVTKDEFMSGEPIFTKYFQNLVKDAEGKAAVEKFLK 137 (147) T ss_dssp HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 9999999999988737999999999999999999988085168999999999 No 5 >1out_A Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_A* Probab=29.01 E-value=25 Score=14.32 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=40.6 Q ss_pred HHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHH---HHHHHC Q ss_conf 6776532122456-5421123222307887666554303420669999---999852 Q gi|254780644|r 99 STVIANLTDSHQK-YATNIATYMPIGEEFAHSLSARIASSENAQVIEA---LYDIVK 151 (289) Q Consensus 99 stvianltdshqk-yatniatympigeefahslsariassenaqviea---lydivk 151 (289) ..+++.|.+-|+. |......|.++|+-|-..+.......=++++.+| +|+.|- T Consensus 79 ~~~l~~L~~~h~~~~~v~~~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~v~ 135 (143) T 1out_A 79 VGGMSALSDLHAFKLRVDPGNFKILSHNILVTLAIHFPSDFTPEVHIAVDKFLAAVS 135 (143) T ss_dssp HHHTHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH T ss_conf 999999999988862898789999999999999986755599999999999999999 No 6 >3bom_A Hemoglobin subunit alpha-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_A* Probab=28.68 E-value=25 Score=14.28 Aligned_cols=54 Identities=6% Similarity=0.148 Sum_probs=41.1 Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHH---HHHHHC Q ss_conf 66776532122456-5421123222307887666554303420669999---999852 Q gi|254780644|r 98 YSTVIANLTDSHQK-YATNIATYMPIGEEFAHSLSARIASSENAQVIEA---LYDIVK 151 (289) Q Consensus 98 ystvianltdshqk-yatniatympigeefahslsariassenaqviea---lydivk 151 (289) ...++..|...|+. |.....-|.++|+-|...|.....+.=++++.+| +|+++- T Consensus 78 l~~~l~~L~~~H~~~~~V~~~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~ia 135 (143) T 3bom_A 78 LFGFLTKLSELHATKLRVDPTNFKILAHNLIVVIAAYFPAEFTPEIHLSVDKFLQQLA 135 (143) T ss_dssp HHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH T ss_conf 7999999999887566998899999999999999987557899999999999999999 No 7 >1yhu_B Giant hemoglobins B chain; globin fold, oxygen storage/transport complex; HET: HEM; 3.15A {Riftia pachyptila} Probab=25.60 E-value=25 Score=14.31 Aligned_cols=55 Identities=16% Similarity=0.279 Sum_probs=40.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHCC Q ss_conf 6677653212245654211232223078876665543034-206699999998528 Q gi|254780644|r 98 YSTVIANLTDSHQKYATNIATYMPIGEEFAHSLSARIASS-ENAQVIEALYDIVKN 152 (289) Q Consensus 98 ystvianltdshqkyatniatympigeefahslsariass-enaqviealydivkn 152 (289) ....+..|...|.+|.....-|.++|+-+-..+.....++ ++..--.++|+++.+ T Consensus 85 l~~~L~~lg~~H~~~gV~~~~f~~~~~~ll~~l~~~lg~~~~~~~AW~~~~~~I~~ 140 (144) T 1yhu_B 85 LNTQLAHLAKQHETRGVEAAHYDTVNHAVMMGVENVIGSEVFDQDAWKPCLNVITN 140 (144) T ss_dssp HHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH T ss_conf 99999998762662699999999999999999999868999879999999999997 No 8 >1x9f_B Erythrocruorin, globin II, extracellular, globin AIII, globin B; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_B* Probab=24.87 E-value=30 Score=13.83 Aligned_cols=53 Identities=11% Similarity=0.163 Sum_probs=40.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC Q ss_conf 67765321224565421123222307887666554303420669999999852 Q gi|254780644|r 99 STVIANLTDSHQKYATNIATYMPIGEEFAHSLSARIASSENAQVIEALYDIVK 151 (289) Q Consensus 99 stvianltdshqkyatniatympigeefahslsariassenaqviealydivk 151 (289) ...+..|...|.+|.....-|..+|+-+-..+........+..--..+|+.+. T Consensus 86 ~~~l~~Lg~~H~~~gv~~~~f~~~~~~ll~~l~~~lg~~~~~~AW~~~~~~i~ 138 (145) T 1x9f_B 86 KEELDHLQVQHEGRKIPDNYFDAFKTAILHVVAAQLGRCYDREAWDACIDHIE 138 (145) T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 99999997611504789999999999999999988076586999999999999 No 9 >1pnh_A Scorpion toxin; NMR {Androctonus mauretanicus mauretanicus} SCOP: g.3.7.2 PDB: 1scy_A Probab=22.26 E-value=7.9 Score=17.72 Aligned_cols=21 Identities=43% Similarity=0.931 Sum_probs=17.4 Q ss_pred CCHHHCEEEEEEEEECCCCHH Q ss_conf 673230310123200013001 Q gi|254780644|r 242 ANLSECQLNCLGLAVWGSCAP 262 (289) Q Consensus 242 anlsecqlnclglavwgscap 262 (289) .||..|||.|-.|...|.|.- T Consensus 3 cnlrrcelscrslgllgkcig 23 (31) T 1pnh_A 3 CNLRRCQLSCRSLGLLGKCIG 23 (31) T ss_dssp CCHHHHHHHHHTTSSEEEEET T ss_pred CCCHHHEEEHHHHHHHHHHHC T ss_conf 441100110034432355428 No 10 >1yhu_A Hemoglobin A1 chain; globin fold, oxygen storage/transport complex; HET: HEM; 3.15A {Riftia pachyptila} Probab=18.11 E-value=40 Score=12.91 Aligned_cols=73 Identities=7% Similarity=0.222 Sum_probs=49.1 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC Q ss_conf 65779999997468898331011256667765321224565421123222307887666554303420669999999852 Q gi|254780644|r 72 KTMNATLQFLQKVPTADPQAVEYEKPYSTVIANLTDSHQKYATNIATYMPIGEEFAHSLSARIASSENAQVIEALYDIVK 151 (289) Q Consensus 72 ktmnatlqflqkvptadpqaveyekpystvianltdshqkyatniatympigeefahslsariassenaqviealydivk 151 (289) +.|++.-.+++.+ .||. .....+..|...|.+|.....-|-.+++.|-..+......+-+...-..+|+++. T Consensus 65 ~v~~~l~~~i~~l--dd~~------~l~~~l~~Lg~~H~~~gV~~~~f~~~~~~ll~~l~~~lg~~~t~~AW~~~~~~I~ 136 (145) T 1yhu_A 65 RVLGGLDRVISML--DNQA------TLDADLAHLKSQHDPRTIDPVNFVVFRKALIATVAGTFGVCFDVPAWQGCYNIIA 136 (145) T ss_dssp HHHHHHHHHHTTT--TCHH------HHHHHHHHHHHHHGGGCCCTHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCC--CCHH------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 9999999999577--8779------8999999999888963998999999999999999988275188999999999999 Q ss_pred C Q ss_conf 8 Q gi|254780644|r 152 N 152 (289) Q Consensus 152 n 152 (289) + T Consensus 137 ~ 137 (145) T 1yhu_A 137 K 137 (145) T ss_dssp H T ss_pred H T ss_conf 9 Done!