RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780644|ref|YP_003065057.1| hypothetical protein
CLIBASIA_02655 [Candidatus Liberibacter asiaticus str. psy62]
(289 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 58.0 bits (140), Expect = 2e-09
Identities = 61/336 (18%), Positives = 93/336 (27%), Gaps = 150/336 (44%)
Query: 24 MQA---KPYILPALSKEEQKSLKY-FFLPENTLCQKFFNA------FDRH---ATAGI-- 68
M A +P L SL++ +P + FF A F++ T G
Sbjct: 1 MDAYSTRPLTL------SHGSLEHVLLVPTAS----FFIASQLQEQFNKILPEPTEGFAA 50
Query: 69 --EIKKTMNATLQFLQKV--------PTADPQAV-----EYEKPY------STVIANLTD 107
E +FL V Q + E+E Y + A L
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 108 SHQK------------YATNIATYMPIGEEFAHSLSA--RIASSENAQV---------IE 144
+ I P + S SA R NAQ+ +
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDK---KSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 145 A-------LYDI----VKNRNDIMLLTKYGESLQILRRLTQETEKHINNLQDKILQDRAK 193
LY V + L+ E+L L R T + EK + L
Sbjct: 168 DYFEELRDLYQTYHVLVGD-----LIKFSAETLSELIRTTLDAEKVFT----QGL----- 213
Query: 194 EIKHWYDTLIPHPDDSSPNSGVSFDIMEPGHEKTNIYALSYGEQMSAPANLSECQLNCLG 253
I W + +P ++P+ Y LS P
Sbjct: 214 NILEWLE----NPS-NTPDKD---------------YLLS------IP------------ 235
Query: 254 LAVWGSCAPLLNNHHLALSFSIIQFNRWMITTLKVL 289
+ SC PL+ +IQ +++T K+L
Sbjct: 236 --I--SC-PLI---------GVIQLAHYVVTA-KLL 256
Score = 37.2 bits (86), Expect = 0.004
Identities = 36/152 (23%), Positives = 56/152 (36%), Gaps = 47/152 (30%)
Query: 54 QKFFNAFDRHATA-GIEIKKTMNATLQFLQKVPTADPQAVEYEKPYSTVIANLTDSHQKY 112
+K F + H+T+ +K + + QF Q P EK A D K
Sbjct: 1704 EKIFKEINEHSTSYTFRSEKGLLSATQFTQ------PALTLMEK------AAFEDLKSK- 1750
Query: 113 ATNIATYMPIGEEFA-HSLS--ARIASSENAQVIEALYDIVKNRNDIMLL---------T 160
+P FA HSL A +AS + IE+L ++V R M + +
Sbjct: 1751 -----GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRS 1805
Query: 161 KYG---------------ESLQ-ILRRLTQET 176
YG E+LQ ++ R+ + T
Sbjct: 1806 NYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.4 bits (80), Expect = 0.014
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 16/42 (38%)
Query: 33 ALSKEEQKSLKYFFLPENTLCQKFFNAFDRHATAGIEIKKTM 74
AL K+ Q SLK + A D A A + IK TM
Sbjct: 21 AL-KKLQASLKLY-------------A-DDSAPA-LAIKATM 46
Score = 30.4 bits (67), Expect = 0.52
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 23/49 (46%)
Query: 177 EKH-INNLQDKILQDRAKEIKHWYDTLIPHPDDSSPNSGVSFDI---ME 221
EK + LQ +K L + DDS+P + I ME
Sbjct: 18 EKQALKKLQ--------ASLK-----L--YADDSAP----ALAIKATME 47
Score = 26.9 bits (58), Expect = 5.0
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 17/37 (45%)
Query: 225 EKTNIYALS-----YGEQMSAPANLSECQLNCLGLAV 256
EK + L Y + SAPA LA+
Sbjct: 18 EKQALKKLQASLKLYADD-SAPA-----------LAI 42
>1vdh_A Muconolactone isomerase-like protein; beta barrel, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.00A {Thermus thermophilus} SCOP:
d.58.4.10
Length = 249
Score = 28.3 bits (63), Expect = 1.8
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 124 EEFAHSLSARIASSENAQVIEALYDIVKNRNDIMLLTKYGESLQILRRLTQE 175
EE + E Q +Y +V ++ D++ L L L
Sbjct: 42 EELKGLVREWRELEEAGQGSYGIYQVVGHKADLLFLN-LRPGLDPLLEAEAR 92
>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen,
jelly- roll topology, structural protein; 1.36A
{Bacillus anthracis}
Length = 220
Score = 27.9 bits (62), Expect = 2.6
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 6/67 (8%)
Query: 210 SPNSGVSFDIMEPGHEKTNIYALSYGEQMSAPANLSECQLNCLGLAVWGSCAPLLNNHHL 269
S +F I E G Y ++ + + L + G+ V G+ L +
Sbjct: 119 SQLDADTFVISETG-----FYKITVIANTATASVLGGLTIQVNGVPVPGT-GSSLISLGA 172
Query: 270 ALSFSII 276
+ I
Sbjct: 173 PIVIQAI 179
>3bd9_A Heparan sulfate glucosamine 3-O-sulfotransferase 5; heparan sulfate
biosynthesis, substrate specificity, glycoprotein, golgi
apparatus, membrane; HET: A3P; 2.30A {Homo sapiens}
Length = 280
Score = 27.6 bits (60), Expect = 3.3
Identities = 10/57 (17%), Positives = 16/57 (28%)
Query: 2 IRKNEKLKEACDVATDSIRSFFMQAKPYILPALSKEEQKSLKYFFLPENTLCQKFFN 58
+ N C + +K I P + L+ FF P N +
Sbjct: 218 LYFNATRGFYCLRFNEIFNKCLAGSKGRIHPEVDPSVITKLRKFFHPFNQKFYQITG 274
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus
subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Length = 245
Score = 27.1 bits (59), Expect = 4.4
Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 11/151 (7%)
Query: 46 FLPENTLCQKFFNAFDRHATAGIEIKKTMNATLQFLQKVPTADPQAVEYEKPYSTVIANL 105
L E T+ T I A + K+ A + I+
Sbjct: 106 KLGERTIWIDCDVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFLAAISVG 165
Query: 106 TDSHQKYATNIATYMPIGEEFAHSLSARIASSENAQVIEALYDIVKNRNDIMLLTKYGES 165
D Q ++ Y E+ + + + + + + +E + E
Sbjct: 166 IDKEQGILLDL-NYE---EDSSAEVDMNVIMTGSGRFVELQGTGEEATFSR-------ED 214
Query: 166 LQILRRLTQETEKHINNLQDKILQDRAKEIK 196
L L L ++ + + + Q ++L D E+K
Sbjct: 215 LNGLLGLAEKGIQELIDKQKEVLGDSLPELK 245
>1yym_M F23, scorpion-toxin mimic of CD4, exterior membrane
glycoprotein(GP120); HIV-1, YU2, CD4 mimic, antibody,
viral protein/immune system complex; HET: NAG NDG; 2.20A
{Homo sapiens} SCOP: k.23.1.2 PDB: 1yyl_M* 2i60_M*
2i5y_M* 1d5q_A
Length = 27
Score = 27.2 bits (60), Expect = 4.6
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 243 NLSECQLNCLGLAVWGSCA 261
NL CQL C L + G CA
Sbjct: 2 NLHFCQLRCKSLGLLGKCA 20
>2w31_A Globin; oxygen transport, hexacoordination; HET: HEM; 1.50A
{Geobacter sulfurreducens}
Length = 162
Score = 26.9 bits (59), Expect = 6.3
Identities = 8/44 (18%), Positives = 20/44 (45%)
Query: 164 ESLQILRRLTQETEKHINNLQDKILQDRAKEIKHWYDTLIPHPD 207
+ ++ R T E + + +L ++ + +YD L+ P+
Sbjct: 5 QEIKAHYRFTDEDAELLGSLFPLAETNKERLADQFYDYLLGIPE 48
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 249
Score = 26.4 bits (57), Expect = 6.6
Identities = 4/34 (11%), Positives = 16/34 (47%)
Query: 163 GESLQILRRLTQETEKHINNLQDKILQDRAKEIK 196
+ L+ + + + ++ L D++++ +E
Sbjct: 211 EDHLERVLEAAAQAARDVHTLLDRVVRQHVREAS 244
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.4 bits (57), Expect = 7.9
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Query: 171 RLTQETE--KHINNLQDKILQ--DRAKEI--KHW 198
RLTQE E + Q K LQ D A ++ + W
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEW 112
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.318 0.131 0.383
Gapped
Lambda K H
0.267 0.0450 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,330,609
Number of extensions: 97819
Number of successful extensions: 319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 20
Length of query: 289
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 197
Effective length of database: 3,462,782
Effective search space: 682168054
Effective search space used: 682168054
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.0 bits)