Query gi|254780645|ref|YP_003065058.1| hypothetical protein CLIBASIA_02660 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 91
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 08:18:30 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780645.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2veaa3 d.110.3.9 (A:4-130) Ph 19.0 14 0.00098 16.9 0.4 13 58-70 12-24 (127)
2 d2crba1 a.7.16.1 (A:8-90) Nucl 18.2 24 0.0018 15.5 1.6 24 9-33 42-65 (83)
3 d2qi2a1 b.38.4.1 (A:1-126) Cel 16.4 29 0.0021 15.1 1.6 32 17-48 13-44 (126)
4 d1irqa_ a.43.1.4 (A:) Omega tr 16.4 38 0.0027 14.4 3.1 34 22-58 8-44 (48)
5 d1swya_ d.2.1.3 (A:) Phage T4 13.9 30 0.0022 14.9 1.2 29 19-47 104-134 (164)
6 d1pgl21 b.121.4.2 (2:1-182) Co 13.3 43 0.0031 14.0 1.8 25 63-88 66-90 (182)
7 d2vgna1 b.38.4.1 (A:1-135) Dom 11.9 26 0.0019 15.3 0.4 39 14-52 15-53 (135)
8 d1u7la_ e.57.1.1 (A:) Vacuolar 9.9 60 0.0044 13.2 1.6 10 46-55 305-314 (388)
9 d1k28a3 d.2.1.3 (A:130-345) Ta 9.5 45 0.0033 13.9 0.9 28 20-47 154-183 (216)
10 d1vi7a1 d.14.1.11 (A:3-137) Hy 9.5 59 0.0043 13.2 1.5 20 50-76 36-55 (135)
No 1
>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=18.98 E-value=14 Score=16.94 Aligned_cols=13 Identities=23% Similarity=0.141 Sum_probs=7.1
Q ss_pred HHHCCCCCCCCCE
Q ss_conf 0000301675420
Q gi|254780645|r 58 SEKESISIPGSIK 70 (91)
Q Consensus 58 sekesisipgsik 70 (91)
.|+|-|.|||+|.
T Consensus 12 Ce~EPIHipG~IQ 24 (127)
T d2veaa3 12 LETLAIHTAHLIQ 24 (127)
T ss_dssp HHHCCSTTCCEEC
T ss_pred CCCCCCCCCCCCC
T ss_conf 4434474778507
No 2
>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.23 E-value=24 Score=15.49 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=19.2
Q ss_pred CCCCCCHHHHHHCCCHHHHHHHHHH
Q ss_conf 4222211356530725668999998
Q gi|254780645|r 9 SKKSKGAQVKENLGLQKDLNHIRQI 33 (91)
Q Consensus 9 skkskgaqvkenlglqkdlnhirqi 33 (91)
.|..+..||.+.|-||+| .|++|+
T Consensus 42 ~klt~s~~~l~SLqLQ~~-~hlKQ~ 65 (83)
T d2crba1 42 MKLTESEQAHLSLELQRD-SHMKQL 65 (83)
T ss_dssp HTTCCCHHHHHHHHHHHH-HHHHHH
T ss_pred HHCCCCHHHHHHHHHHHH-HHHHHH
T ss_conf 857875999999998899-898899
No 3
>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]}
Probab=16.45 E-value=29 Score=15.06 Aligned_cols=32 Identities=31% Similarity=0.342 Sum_probs=22.3
Q ss_pred HHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 56530725668999998300411013456788
Q gi|254780645|r 17 VKENLGLQKDLNHIRQIINEGDFKSAAVKMRI 48 (91)
Q Consensus 17 vkenlglqkdlnhirqiinegdfksaavkmri 48 (91)
++-..--..||-|+.++|..||.-.|...-++
T Consensus 13 v~L~~E~~dDLW~L~nli~~GD~V~~~T~Rkv 44 (126)
T d2qi2a1 13 YRIRIESLDDLWYLRNILSEGDEVSAITFRRV 44 (126)
T ss_dssp EEEECCSSHHHHHHHHHCCTTCEEEEEEC---
T ss_pred EEEEECCHHHHHHHHHHCCCCCEEEEEEEEEE
T ss_conf 99997887899999985779999999999986
No 4
>d1irqa_ a.43.1.4 (A:) Omega transcriptional repressor {Streptococcus pyogenes [TaxId: 1314]}
Probab=16.40 E-value=38 Score=14.37 Aligned_cols=34 Identities=35% Similarity=0.550 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 7256689999983---004110134567889999998630
Q gi|254780645|r 22 GLQKDLNHIRQII---NEGDFKSAAVKMRILVESFLRKLS 58 (91)
Q Consensus 22 glqkdlnhirqii---negdfksaavkmrilvesflrkls 58 (91)
....||.||-.|- |.|..|. -|.+-.++++|+.-
T Consensus 8 rvradlhhiikietaknggnvke---vm~~~l~~~~~~~l 44 (48)
T d1irqa_ 8 RVRADLHHIIKIETAKNGGNVKE---VMDQALEEYIRKYL 44 (48)
T ss_dssp EEEHHHHHHHHHHHHHHTCCHHH---HHHHHHHHHHHHHS
T ss_pred EEEECCEEEEEEEECCCCCCHHH---HHHHHHHHHHHHHC
T ss_conf 77602100467775336888999---99999999999867
No 5
>d1swya_ d.2.1.3 (A:) Phage T4 lysozyme {Bacteriophage T4 [TaxId: 10665]}
Probab=13.91 E-value=30 Score=14.92 Aligned_cols=29 Identities=14% Similarity=0.294 Sum_probs=18.9
Q ss_pred HHCCCHH--HHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 5307256--6899999830041101345678
Q gi|254780645|r 19 ENLGLQK--DLNHIRQIINEGDFKSAAVKMR 47 (91)
Q Consensus 19 enlglqk--dlnhirqiinegdfksaavkmr 47 (91)
-|+|... ....+++-||.||++.||-.|+
T Consensus 104 fNlG~~~~~~f~~~~~~l~~gd~~~Aa~e~~ 134 (164)
T d1swya_ 104 FQMGETGVAGFTNSLRMLQQKRWDEAAVNLA 134 (164)
T ss_dssp HHHCHHHHHTCHHHHHHHHTTCHHHHHHHHT
T ss_pred HHCCCCHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 1048732110757999998779999999998
No 6
>d1pgl21 b.121.4.2 (2:1-182) Comovirus coat proteins (VP37 and VP23) {BPMV (Bean pod mottle virus) [TaxId: 12260]}
Probab=13.28 E-value=43 Score=14.03 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=19.9
Q ss_pred CCCCCCCEECCCCCCCCCCCCEEEEE
Q ss_conf 01675420011200233565306887
Q gi|254780645|r 63 ISIPGSIKARKNCWNLSTSTGAYLRI 88 (91)
Q Consensus 63 isipgsikarkncwnlststgaylri 88 (91)
--|||+||++-+| |.+..||--|-|
T Consensus 66 h~i~gklk~~~t~-~v~~ntGigLai 90 (182)
T d1pgl21 66 HRIKGMIKMVATV-GIPENTGIALAC 90 (182)
T ss_dssp SCBCEEEEEEEEC-CCCTTCCCEEEE
T ss_pred CCCCCEEEEEEEE-CCCCCCCEEEEE
T ss_conf 3115508999997-679887648999
No 7
>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=11.85 E-value=26 Score=15.25 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=24.7
Q ss_pred CHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 113565307256689999983004110134567889999
Q gi|254780645|r 14 GAQVKENLGLQKDLNHIRQIINEGDFKSAAVKMRILVES 52 (91)
Q Consensus 14 gaqvkenlglqkdlnhirqiinegdfksaavkmrilves 52 (91)
...|+--.--..||-|+.++|..||.-.+...-++-.++
T Consensus 15 ~g~v~l~pE~~dDLW~LynlI~~GD~V~~~t~R~~~~~~ 53 (135)
T d2vgna1 15 GAVITLLPEDKEDLFTVYQIVDKDDELIFKKKFTSKLDE 53 (135)
T ss_dssp CEEEEEECCSHHHHHHHHTTCCTTCEEEEEECC------
T ss_pred CEEEEEEECCHHHHHHHHHHCCCCCEEEEEEEEEEECCC
T ss_conf 537999838878999999861689999999999994278
No 8
>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.87 E-value=60 Score=13.21 Aligned_cols=10 Identities=60% Similarity=0.953 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q ss_conf 7889999998
Q gi|254780645|r 46 MRILVESFLR 55 (91)
Q Consensus 46 mrilvesflr 55 (91)
+|+.|||.||
T Consensus 305 lRvFVESVLR 314 (388)
T d1u7la_ 305 LRVYVESVLR 314 (388)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 8766433453
No 9
>d1k28a3 d.2.1.3 (A:130-345) Tail-associated lysozyme gp5, catalytic domain {Bacteriophage T4 [TaxId: 10665]}
Probab=9.54 E-value=45 Score=13.95 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=0.0
Q ss_pred HCCCH--HHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 30725--66899999830041101345678
Q gi|254780645|r 20 NLGLQ--KDLNHIRQIINEGDFKSAAVKMR 47 (91)
Q Consensus 20 nlglq--kdlnhirqiinegdfksaavkmr 47 (91)
|+|.. .....+.+-||.|||+.||-.|+
T Consensus 154 NlG~~~l~kF~~~~~al~~gd~~~Aa~Eml 183 (216)
T d1k28a3 154 QMGVGGVAKFNTMLTAMLAGDWEKAYKAGR 183 (216)
T ss_dssp HHHHHHHTTCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 167710122299999998589999999998
No 10
>d1vi7a1 d.14.1.11 (A:3-137) Hypothetical protein YigZ, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=9.53 E-value=59 Score=13.23 Aligned_cols=20 Identities=20% Similarity=0.561 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCCCCCEECCCCC
Q ss_conf 999998630000301675420011200
Q gi|254780645|r 50 VESFLRKLSEKESISIPGSIKARKNCW 76 (91)
Q Consensus 50 vesflrklsekesisipgsikarkncw 76 (91)
+..||..+..+.. +|+.|||
T Consensus 36 ~~~~l~~lk~~~~-------~A~H~c~ 55 (135)
T d1vi7a1 36 AKAFVESVRAEHP-------DARHHCV 55 (135)
T ss_dssp HHHHHHHHHHHCT-------TCSBCCE
T ss_pred HHHHHHHHHHHCC-------CCCEEEE
T ss_conf 9999999985588-------9955899
Done!