RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780645|ref|YP_003065058.1| hypothetical protein
CLIBASIA_02660 [Candidatus Liberibacter asiaticus str. psy62]
         (91 letters)



>2aaz_A TS, tsase, thymidylate synthase; methyl transferase,
          nucleotide biosynthesis, transferase; HET: UMP CB3;
          2.08A {Filobasidiella neoformans} (A:)
          Length = 317

 Score = 26.2 bits (57), Expect = 1.6
 Identities = 8/36 (22%), Positives = 16/36 (44%)

Query: 6  TPPSKKSKGAQVKENLGLQKDLNHIRQIINEGDFKS 41
               + K  +   +    + L+ IR+IIN G+ + 
Sbjct: 3  ATIDDQEKNQRSNPDHEEYQYLDLIRRIINVGEVRP 38


>2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine
           5'-monophosphate deaminase, coformycin 5'-phosphate,
           structural genomics; HET: CF5; 3.34A {Arabidopsis
           thaliana} (A:1-258,A:325-701)
          Length = 635

 Score = 24.7 bits (53), Expect = 4.1
 Identities = 7/30 (23%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 25  KDLNHIRQIINEGDFKSAAVK-MRILVESF 53
            DL+H+ ++I  G+ ++   + + +L + F
Sbjct: 192 TDLHHVLKVIAAGNIRTLCHRRLVLLEQKF 221


>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking,
          tail-anchored protein, protein binding, GET5, GET4;
          1.99A {Saccharomyces cerevisiae} (A:1-130)
          Length = 130

 Score = 24.7 bits (54), Expect = 4.5
 Identities = 11/54 (20%), Positives = 19/54 (35%)

Query: 12 SKGAQVKENLGLQKDLNHIRQIINEGDFKSAAVKMRILVESFLRKLSEKESISI 65
                     L K L      I  GD+  A   +R +   ++R  S + +I +
Sbjct: 2  VPAESNAVQAKLAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIEL 55


>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase;
           selenomethionine, hepes; HET: EPE; 2.00A {Mus musculus}
           (A:1-95,A:393-612)
          Length = 315

 Score = 24.2 bits (52), Expect = 6.4
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 7/45 (15%)

Query: 54  LRKLSEKESISIPG-------SIKARKNCWNLSTSTGAYLRIRGA 91
           L  ++++E + +P        S       + LSTS   YLR++G 
Sbjct: 213 LLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRVQGV 257


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.316    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 634,786
Number of extensions: 21973
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 7
Length of query: 91
Length of database: 4,956,049
Length adjustment: 52
Effective length of query: 39
Effective length of database: 3,198,189
Effective search space: 124729371
Effective search space used: 124729371
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.5 bits)