RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780645|ref|YP_003065058.1| hypothetical protein
CLIBASIA_02660 [Candidatus Liberibacter asiaticus str. psy62]
         (91 letters)



>d2a3la1 c.1.9.1 (A:212-839) AMP deaminase (AMPD), catalytic domain
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 628

 Score = 27.2 bits (60), Expect = 0.41
 Identities = 7/30 (23%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 25  KDLNHIRQIINEGDFKSAAVK-MRILVESF 53
            DL+H+ ++I  G+ ++   + + +L + F
Sbjct: 119 TDLHHVLKVIAAGNIRTLCHRRLVLLEQKF 148


>d1nm8a2 c.43.1.3 (A:386-599) Carnitine acetyltransferase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 214

 Score = 23.7 bits (51), Expect = 4.6
 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 4/33 (12%)

Query: 54  LRKLSEKESISIPG----SIKARKNCWNLSTST 82
           L+  + ++ +S P     +  A    ++LSTS 
Sbjct: 117 LKLQAIEDLVSTPDIFMDTSYAIAMHFHLSTSQ 149


>d1iapa_ a.91.1.1 (A:) p115RhoGEF {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 190

 Score = 22.4 bits (48), Expect = 9.8
 Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 4/53 (7%)

Query: 38  DFKSAAVKMRILVESFLRKLSEKESISIPGSIKARKNCWNLSTSTGAYLRIRG 90
           D  S   + R + E  L  L E +        K+      +      Y+R  G
Sbjct: 139 DRASYEARERHVAERLLMHLEEMQHTISTDEEKSAAVVNAIGL----YMRHLG 187


>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter
          protein APS {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 136

 Score = 22.5 bits (47), Expect = 10.0
 Identities = 9/40 (22%), Positives = 16/40 (40%)

Query: 37 GDFKSAAVKMRILVESFLRKLSEKESISIPGSIKARKNCW 76
          G+  +    + I  E  LR +   ++ S PG     + C 
Sbjct: 7  GNLAAKVELVDIQREGALRFMVADDAASGPGGTAQWQKCR 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0638    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 317,866
Number of extensions: 11656
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 8
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)